Array 1 85010-86562 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATM01000032.1 Peptoniphilus harei strain NCTC13076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 85010 28 82.1 32 AA..T.A....A................ TATCATTTCTACCGCCTATTAGAGTATGGGGT 85070 28 89.3 33 .A........C....G............ ATGGATTGGCTGTTTGTACTGGCTACTCTAACA 85131 28 89.3 33 .A........C....G............ TATTCTTTCTCCACCAATTCATCTTCAATTTCA 85192 28 96.4 33 ...............G............ AACTTGGGGTCGCTGTCAAGTATCAAAGTTATA 85253 28 96.4 33 ...............G............ AGGATCAGGCGCAGGGAAATAGTTTATATTTTG 85314 28 89.3 33 ..........C..C.G............ TGTGTTTCTTTTATCCTCTTCCTTAGCTTGGGA 85375 28 89.3 33 ..........C..C.G............ GATGCTGGTCCCATCACTATTCGGTCTTTTAAA 85436 28 100.0 33 ............................ CTACGATGTCGAAGCACCCACAATAAGATATCA 85497 28 100.0 33 ............................ TCTTCTCCATCAAATCTTACTTTAGCAGTCCCA 85558 28 100.0 33 ............................ TCATAGTGCCTAACTACTCTATTTAATGGTATA 85619 28 100.0 33 ............................ CTGTCAAATCATTAACCCTAGTATTTACACCAG 85680 28 100.0 33 ............................ CAAAAATCTTCCTGTATTTAAAAGTACCATCCA 85741 28 100.0 33 ............................ ATTAGGATTGTACTTGCAGATGAGGTTGACAGG 85802 28 100.0 33 ............................ AACAATTCATTATTTTCTTCTAAATATAACCTA 85863 28 100.0 33 ............................ ACAAGGTTGAGTTTGGCTTATCAAATGTACACG 85924 28 100.0 33 ............................ TTTCGTTCACACTTGGAGATGATATGCCACTCA 85985 28 100.0 33 ............................ TAGTTTTTTCTTTATCTCCCTTACCTTCGAAGA 86046 28 100.0 33 ............................ TCCCAGGCTTCTCCAGTCTTTTCAGAAAATTCA 86107 28 100.0 33 ............................ GAATATTCTAAAAAAGAATCAAAGGAAGAATTA 86168 28 100.0 33 ............................ ATAAACAAGATATCTTGATGTCCGTATCCATCA 86229 28 100.0 33 ............................ CACCAACTCTTCTTTCAAGTTCTGCCACTGTCA 86290 28 100.0 33 ............................ CTATACAAGTGTGCCCAGAACTTTCTAATCCCA 86351 28 100.0 33 ............................ CTATTCTTTTAATGGGAAGTTATATCAATCAGA 86412 28 100.0 33 ............................ AGACACTATCCCGCAACCATCGTTATTCATTTG 86473 28 100.0 34 ............................ CTATCCTGTAAAGCATCAACTGTATTTGAATTGA 86535 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 97.4 33 GGATCACCCCTGCATATGCGGGGACTAC # Left flank : CTAAATCATTAAATAAATCCCAATCATTGTTGGAAGCTTCAGCAAATAAGACCTTCTCTATTTCTTTAAAAAAATCATCAATTATACTCATAAGCTTATTGCACTCCTCCCTGAAAACAAAATTTACTATATAAGCTTTAAAACAAAAACACCCCAACTTAAATGTTAGTGTACCTTATTAGCTTCTTTTATCTTGTCTAGTATCCTCTCTATCCTGACTAATCTTTCTTGATTATCTCCACCTGATTCTAGTTCCACTATTTCTGTTTGCAGATCAAAACCTAGTTGAGCCACCTCGTCGTTTTTCTTATTAATTTCATCGAAGTTATCTAAAAAGAAGCTTTCAAGCCCGCCAATGCTACGGACTGCATCTTCATTATCAAATCTTTCCAGACCGCCTTCTATTTCCTTTATGAACATATCAATTATTTTTTTCATAATCTTTTCTCACCTTTCTTTTTTTTTCTTTGGAGATAACTTTAACAACTTCCATTTTTGTA # Right flank : CACTTAAAAGATCCCGTAACTATCTCATTTCCATTATAAAATATCCCATAATTTATTCACTTTATGAATTAATTTTTCTTCCAGAATTGCATCTTCAAGAGCTCTGTGAGGAACTTTTTCATCAATGCCATAGGATTTTAAAACAGTTTCTAGCTTGTAGTTATTCAAAAATAAGTTATCTTTTTTTACAAACTGCATGATATCATAAACTTTATTATTTATTTTTGCCAAGCCTTCTTTTTCTAATGAGGAGTTTAAAAATTTTATATCGAAAGCAACATTATACCCTAGTATTATTGTGTCACCAATAAAATCAATAAACTCTTCTAATGCTCTTTTTAGTGGAATTCCTTTTTCCTCTAGCATTTCATCGTCAATTCTTGTTAAACTTTTTATTTCTTCTGGTAATTTTCCTTCAATTCTTATAAATCTTTGAAAGTTTTCTTGTTTTTCTCCAACTTTTACTACTCCAATCTCTATTATATTATCATTGAAAGGAT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCTGCATATGCGGGGACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 646680-650053 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATM01000032.1 Peptoniphilus harei strain NCTC13076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 646680 32 100.0 35 ................................ TTGATAATCAGACCATGTATCTGACTCATCTTTAA 646747 32 100.0 34 ................................ ATATTAAGACTACTCAATATGTATTTTGTAGAAC 646813 32 100.0 34 ................................ GCTTGATCCCCGCACCGCCAGGATACCTGGGAGC 646879 32 100.0 37 ................................ CTGGGAGCAATACCTATCAAATCTTATCAGCGACCAG 646948 32 100.0 35 ................................ TTTTTATTCTTGCATATTGGACTTTTACATTTAGT 647015 32 100.0 35 ................................ AAGTTATAGTTTAAATTATTCATGTCACAAACCTT 647082 32 100.0 34 ................................ TCTTATGACGACCTCACAATAAAAAATAAATGGA 647148 32 100.0 34 ................................ CCTTTCAGGTGCTGACTGGTGCTTTGAAAGACTT 647214 32 100.0 35 ................................ TCTACCCATGCCCATTTATCCTCGATAGTTTTTTC 647281 32 100.0 34 ................................ TATGCTCCCCATTTAAAAGTTTGGCATAGTCAAG 647347 32 100.0 36 ................................ TTATCAAGAGAATGTATTTATAGGCTTTTTTGCCCT 647415 32 96.9 35 ..........A..................... TCTACCCATGCCCATTTATCCTCGATAGTTTTTTC 647482 32 100.0 34 ................................ TATGCTCCCCATTTAAAAGTTTGGCATAGTCAAG 647548 32 100.0 34 ................................ GCCTGATCCTGCGGAAAGGCTCGGTCAATAGCTT 647614 32 100.0 34 ................................ AAATCTGAAAATAAGGCTCAATCCTACCGCCGTT 647680 32 100.0 35 ................................ CATAACATCGTCCATTATTCCTTTAAATGTAAGAA 647747 32 100.0 34 ................................ GTCTTACTTGCAAACTCTAAAACATCATCTACAT 647813 32 100.0 35 ................................ TAAAAAGTTATAATCTTACATTTATAAACCTTGAA 647880 32 100.0 35 ................................ AAGAGTTGGAGGGTCGACTGTACCTGCCATTACTG 647947 32 100.0 35 ................................ TTTAGAAGAACTAAAAGCGACCTTGACAACTTGGA 648014 32 100.0 36 ................................ AATTCTCTATCAATGGAGTTATGTATTAATAGCGAT 648082 32 100.0 35 ................................ AAAAAATCTTCCAAACGTGGTGGGAAATGGATATA 648149 32 100.0 34 ................................ AAAAAGATTATAAGAATTATAGCTTCGGACCAAT 648215 32 100.0 34 ................................ TTTCGTCCTTCGTAAATTCCTCAGTGCAGAATTA 648281 32 100.0 35 ................................ TCTTACCTCTGGGAGGTCTGCTCTTCTAAGTTCTC 648348 32 100.0 34 ................................ AAATACATTTGACCTTGTTGCTCAAAAATATCTC 648414 32 100.0 34 ................................ GGTTTCTCCTGCGGCTATGTTGTCAAAGTCCAAA 648480 32 100.0 34 ................................ AAACAGAAAGCTACAAGGTATTTTCTCCAAAGTG 648546 32 100.0 36 ................................ CAATTAGGGCTACAAGCCTTAGCTATAACTTGCCAA 648614 32 100.0 36 ................................ TATTCTATGTCCTAACTGTAATGTGTGGCTTAAGGC 648682 32 100.0 35 ................................ CTGATAAAATTTCACCTGAATCTTTTAATCTATTT 648749 32 100.0 34 ................................ CGTCAATTAAAACTTTTTTGTCCTCGTGGTTTGC 648815 32 100.0 36 ................................ AATTTTAGAGGAGATAGCCTTGATGTAGCTATCCCC 648883 32 100.0 35 ................................ CATTTTCCATGGGAATTTTTATAAGATACAATTCC 648950 32 100.0 34 ................................ TTCGCAATTAGAAACGTGTATATATTTATCATAC 649016 32 100.0 35 ................................ ATCAGTCTTGCCGACTCTATCAGTCCAGACTTGGA 649083 32 100.0 35 ................................ TTTGATACTGAAGATAAAGATATACTGGCATTAAC 649150 32 100.0 35 ................................ CATTTTCCATGGGAATTTTTATAAGATACAATTCC 649217 32 100.0 34 ................................ TACTCTTGAAGTTCTAGATATTTTTGAGGTATAA 649283 32 81.2 37 .......C..ATAC.G................ AGTACAAGTAACAGGTATTATTGCCGCTTGTGCACCT 649352 32 84.4 36 ..........ATAC.G................ TAATGCACGTAAATCACGCACATTAGATCAAAATAA 649420 32 81.2 35 .......C..ATAC.G................ AAATCGTCGAAAATCAATTGAAAGATAATGAAGAC 649487 32 81.2 35 .......C..ATAC.G................ ATAAGTAGGTCATAAGGTATTTCCAAAGATGCCCC 649554 32 81.2 35 .......C..ATAC.G................ GAACTAACTCACAGTAGGGAAGAGTTTATAAGGAT 649621 32 81.2 34 .......C..ATAC.G................ TCACAGATTAAATTATCAATATCTTTTGTAATTT 649687 32 81.2 35 .......C..ATAC.G................ TCTAATATACATTAGTGTAGTATTATAGGACTCAT 649754 32 81.2 34 .......C.TT.AC.G................ AGGTGTGAGGTTTTTGTTTGCTCTATAAAGTACA 649820 32 84.4 36 .......C..T.AC.G................ TGTCATGTACGCTCCGTGTTTTCTTATGGTTGGTAA 649888 32 81.2 36 .......C.TA.AC.G................ GCTTGATCCCCGCACCGCCAAGAGGCCAAGGGACCA 649956 32 100.0 34 ................................ GTCTGAAGCCGAACCCCACCCAAAAGCAAAACTA 650022 32 68.8 0 ....A..C.TT.AC.G...T....T..T.... | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 95.8 35 GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Left flank : TCCCTCATGTACAGGCCCTTTTATTAAACTCTTACCTAAGAGGAGATATAGAAGCCTATCCACCCTTTATGATAGGAGGATAAAATGCAAGTGCTGATTACTTACGATGTAGAGACGATAACGCCAGCTGGCAAGAAAAGATTGAGACAAGTTGCAAAAGTATGCCTTGATTATGGACAAAGAGTACAGAACTCAGTATTCGAACTAAACATATATCCAGCTGACTTAGTAGAAATAAAAAATAAATTAGAAAAAATAATAGATCCCCAAAAAGATTCCATAAGAATTTATAATTTAGGGAAAAATTGGGAAAGAAGAGTGGAAAGTCTAGGGAGAGATGACACCTATAACCCAGAAAAAGACTTGTTAATATTATGAGACTTGGACCTGGACATAAAAAGTATAGACCTAACTCACAAAAAACAAAGAAAAAAGAGACAAAACTCTTCAAAAAATGATTAGCTGTATTTTTTACTAGGAGATAATGGCTAAAAAATACA # Right flank : TGATCAATATTCTTAAGGAGATATAATAATATTATGAAAAATATCAAAGATTTAGAAGATGATTATATTGAGAGGTTTGGAGATTTATTCCCAACAATAGGTATATCAAGAGATTATGAAAAAGAGATAATATTAATTTGTTTAGCTAAGGACAAAGATGCGTATGGGTTAGGATATTTTGATTTAGAAAAATGCTATTAAAAGTATGACGTAAATTATTCTAGGGTTGTAGTGATTGGAATTGGTGCTGAATATGAGATATTGCACCGTTTAAGATATCATCTCTTTAGATCGAATCTTTAAAAGTGTGTGTGGATTGAAATTTTGGTATCATCAAGAATTAAGTTCATAGTAGTTTGTCGTACTCTTCACGGGTGCATGAATTGATATAAGAAATGGAGATGATAATATTGAAAGAATTGAAAACATCTGAGGCACAAAGACGAGCAACGAAGAAGTGGGAACAGAATAACCCGGAGTCTAAAAGATATAGTCGTAAT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 650670-651101 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATM01000032.1 Peptoniphilus harei strain NCTC13076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 650670 32 68.8 35 .C..T..T.CATGT.A......A......... ATGTCCCTTTTCTACAGTAGTATCTTTAGACTCAT 650737 32 96.9 34 ..........A..................... AAAGATTTAAAAAAAGCTACATGCGATATTGACG 650803 32 96.9 34 ............G................... TTTCATACTGTATAATCACCTCTTGATTGAACAA 650869 32 100.0 34 ................................ ATTGGGAAGATTCTGAAGGATTTAATATTTTACA 650935 32 96.9 35 ..........A..................... CCAACTATATGTTGGAAGACGCCATAAAAATGAGA 651002 32 93.8 36 .............T.................C AATGGCCGACTCTTTGCAGTACAAGGCGACACTGGA 651070 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 93.3 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : GAAAAAGAGATAATATTAATTTGTTTAGCTAAGGACAAAGATGCGTATGGGTTAGGATATTTTGATTTAGAAAAATGCTATTAAAAGTATGACGTAAATTATTCTAGGGTTGTAGTGATTGGAATTGGTGCTGAATATGAGATATTGCACCGTTTAAGATATCATCTCTTTAGATCGAATCTTTAAAAGTGTGTGTGGATTGAAATTTTGGTATCATCAAGAATTAAGTTCATAGTAGTTTGTCGTACTCTTCACGGGTGCATGAATTGATATAAGAAATGGAGATGATAATATTGAAAGAATTGAAAACATCTGAGGCACAAAGACGAGCAACGAAGAAGTGGGAACAGAATAACCCGGAGTCTAAAAGATATAGTCGTAATAAGGGTAATGCGAGAACATTTGCGAGGAAATATGCAAAGACTTTGGAAGAAGTAGAAGAGTTGGTAGAGATTTTCAAAAATGAAAACCCTAACTATAAAAAATAAAAGGTAAATTTA # Right flank : TTTGGGTTCAAGTCCCATCCTTAGCACCATTTTTGTCGCAAACTTTATTATGAAGAAATTAAAATATTTTAAAAATATGCCTAACCTAAAATTTTTAGGTTAGGTTTTTTGTTGTTAAAAATTTTAAAGATTAAATAGAAATTAGTTAATGCTAAGTAATATTAGCTTATGAAATTTATTCTGGAGAAGCTAAAATTATTCAAGTAATTAGTATAAAGTTAAGGATTTTTACTAAGTCATTAGGAGATATGATTTGGAAAATTATTATGATGTTGAAAATTATTAGGAATTTATAAAAAATTATGAAGTAGAAAAATTTTATGAAGTTGTAAATAATTATGAAGTTAAAAAATTTTATTAAGTTGCAAAAAAACATATAGTGGAAAGTTATTATGAAGTCATTAAAGGATAAGATGTAGAAAATTTTATCATTTTATAAAAATTATTAATTTATAATAGAAGAAAGTTACAAGACCCTATAAATAAATCTAACAATCTTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //