Array 1 85906-86114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEDV010000013.1 Gilliamella sp. ESL0250 Ga0227301_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85906 28 100.0 32 ............................ GTCCAGCAGCGGGCGCTTTTTGCCCATTTTCA 85966 28 100.0 32 ............................ ATAGGCATCTTACGTAATGAATAATCAGTATC 86026 28 100.0 32 ............................ TATTCGGCGGTGAACGAGCTACCGCCTTGATT 86086 27 89.3 0 .........G.....C........-... | AA [86107] ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 CTTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : GTGAGTATAATACCCAAGATGTGATCCTTGGACTACCGACAGAATCAACCGAAGATTGCAAAATTTTCCATGCGGGTACCAGTTTAGAAAAAGGTCGCATTTACACCAATGGCGGGCGTGTGCTATGCGTTACCGCATTAGGCAATACCATACTTGAAGCGCAACAGCGTACTTATGAGCAAATAAAAGATATTTATTGGCATGGCTGTTTTTATCGTAAAGACATTGGTTATCGTGCGATTGAGCGGGAACAAAACAAATAGCGGTGATTGGTTGTTTTTTGAAAAAACAACCAACTACTATCTAAAAATCAGTCAGAAAACGTATTGATTTATTTTTTTAAGAATTTTTTCAATTAAAACCTCTGCCAACCCTTTTTTTAACGATAATTTAAAATTAAATAAAATCAGTATATTAACAAATAGCTCAAAAAAAGGGTTTTCAAAGATGAAATTGTCGTTTATCTTTATACAGCAGGACTTATCGAATCTTAAGTTCTA # Right flank : ATAAAATCATCAAGATAATTATAAAAACAAAATAACTTCCCAAAATAACTGGCTATGTTGTTTGTCTTATTCCGGTGTCAGAATATGACGCTAATATAGCCATTTAGCACGCTAAACAGGGATGTTTGGTTAGGCTATGCTTTGCCGAGAGCCAAATTTGTTTGGAATAAATTCGAACATCTAAGCAAAGCGAAGATGGCCTCGAAGAGGCGAGTATCAGAATGATACGAGTAATTGCGTTGGGCAGTCAAAGGTCACATTCTACAGCCTTGCGAGGGGGTTTTTAGGAGATTTGGCCAAAAAACGTTCTCATTATTTGGGATTTTGATTCTTATTGTTTTTTAAGTCTAGTATCGAATACTGACACAATCCTACTTTAAAATAGATTAACAACTTTTTGACGCTTGTTTATAAATTGAATCTTCATTTTAAGTTATAGCACTCTATGTTATGCTAGCGCTAATATTAGTCACAGGATATCCCTTATGATAAAAGATCCA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6708-6557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEDV010000002.1 Gilliamella sp. ESL0250 Ga0227301_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6707 29 100.0 32 ............................. CAAGTCTACGCGGTAAAAATTCGCGTGAAATC 6646 29 100.0 32 ............................. CGAATGTTATTAAATCCAATTTACCTGCTGTT 6585 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGTTCCCTATGCACATAGGGATAAACCG # Left flank : CATAAAACTATTGATCCATCCCCAAACAAATGTACTCCCTTCACCAGCTCAAATAAGAGCTAACATTGAATCGGCTACACTAATTCATACAACCTTTTTAAGGAGTAAGGTAACCTTATCGCAACTAAAAAAGGATCTAAACGCCTTTATTGAACAAGCAATGTAAGCAACCTTATTCTTTATCAATAAAATTTATTAACTCATTAAATTTAAAATAATTTCACACTGAAACGGTATAGAATCCTGAATATTTTTAACAAAAATTGTTTTTTTTTTAATAAAGAAATACCTTGTTGTATCACTAACTATGCTATAACTATAAGAAATTTAAAGATTAATTGGTAGAATAAAAAAATCGTAATATTCTCTATCTTATTTTTAATATTAATTTAATAAAAACAATGTGTTATAAAATGATTGTTATTTTAAGAATAATTAAAAAAGTTGGTATAAATTTAAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGT # Right flank : TCATTAAACCTATTTGTTTTGAAGTAAAAAGAGCGATAAGCGCTTTGACTAAGATGTGATATACCAAGTATTTAAAGATGCACAAGAAAAAGATTAAACGATTTTGTGTAAAATTTTCAATAATATTTAGATAACTATTTAAAACATGCAGTATAAACAGTTCGACCTTTCTAATAGATTATGTTAGTTGAACAGGTATGAAGTAATTATTAAAGGTTTTATTGAAACAACTTAATGTTTTACAAACCAATATTTGTAATATCTTCAAATCAAAAATATTCTACTTGAAAAGTAAAATAGATTTTTTTAAAGTAGGTAAGATCATTTAAAAATGATCTTTTTTATCACGCTCTACAAGTCCCAAACAAAGTCTCTGGGACACAATATTCAAAAAACAATTGAGTATTTATCCCTCAAAGCTTTTTTAATATCATATAAAGGAGTGTTGCAATGTCAGAAAAAAAAGAACTAACCAATAATAACGGTGCCCCAATAGCCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATGCACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 267207-267534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEDV010000002.1 Gilliamella sp. ESL0250 Ga0227301_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267207 29 100.0 31 ............................. TATTTCCGTAAGCAAGGCTTTGCGCTTCTGT 267267 29 100.0 32 ............................. TTATCCGTACACAGCTTAGTGATAACTATAAA 267328 29 100.0 31 ............................. GCGGAAGCAACTGTTTCAATGAATGCTAACT 267388 29 96.6 30 ............................G CTCAATAAGTCACTTTTTCTATCTTTATTT 267447 29 93.1 31 ............G...............T TTCCCTAAAACGTATTGACCATTATTACCAG 267507 28 79.3 0 ....................-.A..TCTC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 31 GTTCACCGCCGTATAGGCGGTTTAGAAAA # Left flank : ATCCAAGGTATCCAATTTCAAGCCACAGCAACGCTTTTACAAAAAGAGCAAGCCGTACATGCTTATAGGTTATATTATCAGGCATTTCCCTTTGCAAGGGTGATAAAAGCACCAATTTGGTCATTGCAGTTGCAACATATAAAGATGACAAGTAATTTATTGGGGTTTGGTAGGAAAATTCATTGGCTAAAAGGCGAGAATAATTTTTAGTGTACTCTCCTGTTAGTTATGGTGTGGTTTTTTGGGGGGATATAAGGGACTATCTTGCCTTAAAAACAACAAGATCAAAGTTAATTTAAATCAATGCGATATCTGAATATCTTTTAATGGCTAAATTGACACATTATCGAAACAGCCAAAATCCAGCCAACCCTTTTTTTAATCAAAAAATTAAAATCAATAAAAACAATAAATTAAAAATGCCTTATAAAAAAGGGTTTTTGAAAACAAAAATCCTATTTGCCTTTTGCCAAACAAGGTTTATAGTATATCGGCTTCTA # Right flank : CAAAAAAGCAGAAATCATGATATAACTTATTGATTTATATAACAATAAAAAACAAACAAAATCAGTGCCCTGTATAAACAATTCTATAGAGAGGGGGGGAAGATACCGCTTTTATAACAGCCAGAGGTTAATATTGCCATTAATCGGTGTCAGAGTGAGCCGACAATTGAGTAAGGTTAGCACGTCAAATAAGGGGCGCTGGGTTATATTTGTCAGAAATAAATTCTAGTTGTGCTGTATAACCGAACTAAGACTCTTGTAAGTTGATTTGTGTTGTTTAATATTGCATCGATTATTGACCGTATAAAGACTATTTTGCCTGTTTATGGTATGATTAGTGCCAAATTCAATGGCAATAAGTTATGGTGATGATGAGTTATCAAGTTTTAGCACGCAAATGGCGACCAAAATCATTTTCTGAAGTTGTAGGGCAGCAGCACGTCCTAAAAATTCTGTCTAATGCGCTTTCGCTTGGGCGGGTTCATCATGCTTATCTGTTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTATAGGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 233647-233916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEDV010000003.1 Gilliamella sp. ESL0250 Ga0227301_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 233647 29 96.6 32 ............................A TTCCGCGGAAATCTGGGTGACCGAAATTTAAA 233708 29 100.0 31 ............................. ACGAACACGACCTAATCTAGAATATGCAACC 233768 29 100.0 31 ............................. CAAATTTAAACCAAATTATTTCGTTAGCTTG 233828 29 100.0 31 ............................. AGGAGTTAAAATAACGAAAAAGATGGAATCA 233888 29 82.8 0 ...................T..A.TTC.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 31 CTTTAACGCCGCATAGGCGGTTTAGAAAT # Left flank : TACGGCTAAGCGATTTGTATCATCCTGATACTTGTTTCTTCAAAGCCATCTTCGTTTTGCTGAGATGTTCATAATTTTTCGAGAAAAATTTGTCCGTCTGTGTTCGGTTTTAACATTCCAGCTATGATTTGTTTCTGATAAACACAGTTACGCCAAATATCCCTGTTTGGTGCATTAACCCCATTCCATTTTCGACATATTCTGACGCCGGAACAAAACAAACAAAATAGACTTTGGGTGGTGGAATGGTCTGTGTTTTTTATTTGGATACTTTTTTCATAAAAAAACAACCTAAGTGCTATTCAAAGATAGGTTAGTAAAAATATTGATTTTATTTTATTGGGTTTGTTTTGACTTTAAAACCCTCAGAACCCTTTTTTTATCGGCAATTTAAAATTCAATAAAATCAAAACATTGAAAAACAGCTCAAAAAAAGGGTTTTCAAAACTAAAATTGTTGTTTATCTTTATACAGCAAGATTTATAGAATCTTAAGTTCTA # Right flank : TATAAAATTAACTCGATAATTATAAGAACAATAATCCCTTCCAAAAATAAGAGGTTATTTTGTTTATCTTATTTCGGTATCAGAATGCGCCGACAACTAAGCGAAGTTAGCACGCCAAACAAAGGTGTTTGGCGTGTTTGCGCTTTGTCAGAAACACAAATTTGTCTAGAATAAATTTAGTCATCTGAGCAAAGTGAATATGACATCAAACAGGCTAGTTTCATGGATGATACGAGTAAATATAAGTCGGTCATATTTTGCAACTAGATCGGGGGGTAGGGGATTGGCTACAACTCCCTAGCTCGGATGTTGTCACTGTCGCTATTTATTCCACCAACAGCTCAAAACGTCCGAAATTCAATCAAGCAAATTGTAACCAAACACTGCCACTCAAACCCGAAAATTATAAAAAAATATTTACATCATTGATTTGATTTTGTTTTTTCTTTTTTAACAAAAACAAAATTTCAATCTCTTAAAGCTTTCTCCAAAGCTTAATA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGCATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 150723-150514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEDV010000004.1 Gilliamella sp. ESL0250 Ga0227301_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 150722 26 100.0 35 .......................... CCGCGGGCGTTTTCAGGCATTGTTGGCGTGTAATT 150661 26 100.0 35 .......................... CCGCCCGGTAGGTGCGTATGCAGACACTGGATTTT 150600 26 100.0 35 .......................... CCGGGTCGATTGATTTAGGTAAACCAAAAGAGCAT 150539 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTGATTGAAGATGTCTTATCAGCCGGAGGAATTGAACCGCCATTACCACCTGATGATGTTCAGCCTCCAGCTATCCCTGAACCTAAATCGCTTGCCGATAGTGGCTTTAGGAGTCACTAATTATGAGTATGTGTGTGGTTGTGACCGAAAATGTACCGCCCAGACTAAGGGGGCGTTTAGCTATTTGGTTGCTAGAAGTTAGAGCAGGAGTTTACATTGGTGATATCTCCAGACCAATTAGAGAAATGGTATGGCAACAGATAATGGAATTAGCAGAAGAAGGCAATGTAGTACTTGCTTGGGCAACGAATACCGAATCCGGATTTGACTTCCAAACTTATGGTACAAATAGAAGAGTTCCGGTAGATCTAGATGGACTACGGTTGGTCTCTTTTTTACCTGTTAAAAATCAATAGGTTAAAGTTCTTTAAAAATTTAAAAAATTTGGTGGAATTTATCAGTCGATATAATTATAAATAAAACAAATAGCTATGTTTAGA # Right flank : CTGGAATTTTTTAAATCATTATCAAGTAATGATCGTAATACTGTTGAACAATATTTTGAAACTATCATATTCGGTAGAAACTAATTTTCTATATAACATGTATACGAGAAATTAACTATTTATTTATCAATAGTTACTTTTTTTAATATAGGGAGCTTTTTATGAAAACTACTATCGTTAAATTTGCTGTTACTTTTAAAACAAAGTCGAAGTGGAGCAAAGAAGCAAAAAAGAACAACTTAACACTAGCGAATTGGATTATTAACAAATTAAACTCAGATATTGAATTCGATTGCAATCAGGATGTATTGTTACATAACGATATTCCCGCATCTCAACGATATTTTATATCAGTCACTGTTCCAGCGGAATACAAAGGATATTGGGTTTTTTCATCTAGATCAAAGGGGAAAAAACTGAGGGTCTGGATAGTTAATAAATTGAACCATGGTATAGATTAAAGTTTGTTTGTTTTACTTTCTTCTTTTTTTGTCTTCAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52738-52229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEDV010000008.1 Gilliamella sp. ESL0250 Ga0227301_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52737 28 100.0 32 ............................ ATCACATGCAAAACATTACGTCGACCTGTTTT 52677 28 100.0 32 ............................ GCCATCTTTCCACAAGGTTTCGCGCTAATCTT 52617 28 100.0 32 ............................ TAGCCCACAAAAGTGGTAATGTACCTAGTGTG 52557 28 100.0 32 ............................ AAGAGAATTAAGATCCTAACCATCTTTTTTCT 52497 28 96.4 32 ........................A... ATATATTCACGGTGCATTCTGTACAAGAACAA 52437 28 100.0 32 ............................ CGACGGTTTGCCGATTCTTAGCGAGGCAGACC 52377 28 100.0 32 ............................ CGAAAATAAAGATAAAGTTTGTGACATTATGT 52317 28 100.0 32 ............................ TTTAAAGAGCGATTAAAGCTCCTTATTGGTAA 52257 28 85.7 0 .................T....A..C.T | T [52232] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 CTTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : AACTAACGTCGAACCCGTTAAACTAATTAACATTCGTAGACTAAAAAGAAGATTACTGCTGTAAAAGACTTTACGTAAAGTCAAAATGAATGTTTGCACGGCGTATTGGGCTTTGATTGAGTTGAAATGATAGCCAGTAGGATACTATATTGTAGAGCTTTGGGAAAGCGTTGTTTATTTTTTGAGTATAAAAGAGCTTTAAAAAGCAAATAAAATCAATTAATTAAAAGTATGCCTTTGGGTGGTAGCCTGTGTTTTTTATTTTAAGCACTTTTTTCATTAAAAAACAATCTAAGCGCTACTCAAAAATAGGTTAGTAAAGATATTGATTTTATTTTAACGGGTTTGTTTTGATTTCAAGACCCTTAGAACCCTTTTTTTACCGTTAATTTAAAATAAAATAAAATCAATAAGTTGAAAAAAGGTCAAAAAAAAGGGTTTTCAAAACTGAAATTGTTGTTTATCTTTATACAGCGAGATTTATGGAATATTAATTTCTA # Right flank : ATAAAATTAACTCGACAACTATAAAACCATAATAAGAGATTATTTTATTTGTCTTATTCCGGCGTCAGAATGCGCCGACAAAAGAGTGAGGTGAGCATGCCAAACAGAAAAGTTTAGCGAGGCTATGCTTTGTCAGGAACACATTTGAACATCTCAGTAAAGCAAAGATGGTATTGAAAAGATAAGTATTATGGATGATACAAATAATATTGGGGAATTTTACACAAAATCCCCTTATTCAGACGTTATCACAGTAGCAATTTTTTACACCAAATGAATAAAACGTCCGAAAACACTGCCCCAATCCACTCCAGCCACCAAAAAAACTCAATATTAGGCAAAAAACTGTTATATAACATATTGATTTTATTTGTTTTTTGTTTTATTGTTTTTTATGGAAAAACAATAAATTTCAATACCTTAAAGCTTTCCATAAAACTTAATCGAAGTCACATCTAAATAATTTTTACCAAAAAATCCCCAAAAAAAGCTAGCCAAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 82715-82448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEDV010000008.1 Gilliamella sp. ESL0250 Ga0227301_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82714 28 100.0 32 ............................ TCAATGACCCAAGTACAAATACATACGCAGGA 82654 28 100.0 32 ............................ ACGGCTACTAATTTAAAATTTTTAGATCTATC 82594 28 100.0 32 ............................ ATTAGAATGGATGAACGGCGCATTTAATCGTG 82534 28 96.4 32 ...........T................ CAATCAATTTAACCTTCTTTTCAGCTTTTAAT 82474 27 82.1 0 .....C.....T...........T-..C | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCAATGCCGAGTAGGCAGTTTAGAAA # Left flank : ATATCATAGCTGATTTGTTGTTAATTTTCTATCTGCGAGCTTTTATTTGCTTTATTAAGGATGATAAATCCAACCCTAATTATTTTCTGATTTTTCATCTATCCCAAAAATTGAGCTGGTCGCGCTTCTTCATTCTATTGTTGCTTGAAAGTTGTTGATGAACATCATTCAATATCTTTTAAGAAAGATAGAAGAGAAGTTAATTGATATAGGCTATTTTTCTATTTATAGATAGATCAAATCTGAATCCGAAAACGCTTAACGCTATTTTTAGGGCTTTTATTAAAAAACTAAGCAAATTGTTTTTTTTTGGGGGGATTAGGTTTGGGTAGTACTAAGTCATGACACAGTCAAAAACTAAAAAACAGAACCCTTTTTTTTGCCATATTTTAAAAATAAATAAAATCAAATAATTAAAAACTAACCTCAAAAAAGGGTTTTTAAAACATAAATAGTTGTTTGCCTTTTTACATACAATATTGATAGTATATTAACTTCTA # Right flank : TCATCACGAAACGGTATAGACTCCTGAATATTTTTTACAAAAATATAGCTTAAAACGTAACAGTTGTGTAAATACTTCATAATGAGTATACAACTTAGTAAAAAATTACGCTGCTTGTTTTTTGTGTTGTATATGCAATGGGAATCATGTTAGTTGATGTTTTATGAGGTCTTTGGGCGTTAATCAATGGCTGGATAGCAACGGTTCATAATACGTTTAGCCAAATCAATGACGGTTATTTTTTTATATCATCGCCATAACACTTGTTGGTGATATGGCGTTAGTTTTGTTTTATATATATTCATTACAGTCGCTTTTGTTACTACTGTAACCGAAGCAAGTAATTTCTACCATTAAATTAATAGGGTATTTTTAATATCTTCGATCGTTTTTGTGCCAGCTAATTGCATGGTAATAGACAGTTCTTTGTTAAGATGATCAAAGACTGATTTTACTCCCTCAGCTCCACCTAAATTCAGACCATAAAGAATAGGGCGTCC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATGCCGAGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //