Array 1 341553-340724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061473.1 Geobacillus sp. 47C-IIb chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 341552 30 100.0 36 .............................. TCGGATTGGACCACGGAAACGGCTGGGTGAAAATTC 341486 30 100.0 37 .............................. GCGATTGATAAAACCGACCCCAATAATATTGTGGTGC 341419 30 100.0 37 .............................. AAGGAGCGAGCAGACGCGAGCGACGGAAGGGGGAGCG 341352 30 100.0 35 .............................. ATAACATCCGCGTCCACCGCATGGCCAACAGCGAG 341287 30 100.0 36 .............................. CGCTCAACGGTACAGTGTTGACTATCGGTGATTTGT 341221 30 100.0 35 .............................. AAGATTCATCTGCTGTACCAACCAACAAAACAAAA 341156 30 100.0 37 .............................. GATCGCCTGTAATACGATACTGGAACGTTACACCTGC 341089 30 100.0 37 .............................. TCAGCAAATCCTAGCGGCGTTAGATCCAGAAGCGACC 341022 30 100.0 37 .............................. GCGATTGATAAAACCGACCCCAATAATATTGTGGTGC 340955 30 100.0 39 .............................. GCGGAACGGGCGAGTGATTGGGTAGACGCGATCACCAAC 340886 30 100.0 39 .............................. ACTGTCTAATGTCTCTGGGATTGTTTGAAGGTAGTTAAT 340817 30 100.0 34 .............................. TTTGACGAGCATCCTGAAGTGGCCTGAGGGTTGA 340753 30 73.3 0 A................A...AG..C.CTT | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 97.9 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTCCGATGACATCGTCCGCGTCGCCCGTTCACCAATCCGCAAGCTCGGGCCGAACGATCGGCTTGTCGCACCGGCTGTGCAATATTACACTTTATTCGAACGTGTGCCGTCCGGACTTGTCAAAGGCATTGCTGCGCTGCTGTTGTTTGATGAGACCGGCGATGCCGAAGCAACTGCTCTCCAGCAAACGATCGAACAGAGCGGTGTCGAAGGGGCGCTCGTCCAATATGCCGGGCTTGACAATAGCCATCCGCTCGTCGTGGCGGTGAAGGAAGAATATGCTCAAATGAAGCAAATGTATTCGCGTTAAACTCAGATATCCTCTCATATTCTGTCGTCGACCTCCAATCGTGTAAAAATCCCCGGGGGTCGACGACAAGAATTTTTTATACTGAAATCCTACAACCATCAAGCATTGGTATTATTGACATAATTTTCGGAACGTGATATCTTGAATGTAGCCTTGGAAGAAAAAGCCCAATATAATAAGAATTTTTGGG # Right flank : TCTTTCGTTAGCTTTGGAAGCCAGTACGGCTAGGACATTTCCATCAAGGCGGCTGGGACGGTACGAGATGAAAGGCTGCTTGCGTCGTGGAACTGAGGAATTCTTGCTTTAAGTAAAGGGAAAAGGGAGTTGTTCCCCGATTATTTCCTTAAGAATTCATACCTCATCTTATCTTCGTTTTTTATATTGATGAAAAAAATATTGTAAACCGCTTTCACTTGTTTTATAATAAAGCTAAACCGGTTTATGAAAGCGCTTTTGAACTAAATCGATTTAGTACAAGAGAGGGATTCTGTTGAAAAAAGTAACGATGGCTGATGTCGCGAAACTGGCCAACGTTTCCAAAAGCACGGTCTCGCAATATTTGAATAAACGCTATGAATATATGAGTGAAGAAACAAGAAAGCGCATTGCCCAGGCGATCGAAGAACTCGGCTACCAGCCGAACGTGATCGCCCGCAGTTTGAAGCAAAAGACAACAGCGACGATCGGCGTCATTG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2269169-2269328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061473.1 Geobacillus sp. 47C-IIb chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2269169 30 100.0 36 .............................. CTTTACGCAAACGCTCAGCCAGATCCTCGCTACACA 2269235 30 100.0 35 .............................. TATTTTGAAACGGAAGAGCGTAAACGCTATATTCC 2269300 29 83.3 0 ....T.................GC-....T | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 94.4 36 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : AGACGATCGATAGAAGAAAGAAAACTCATTTTTTCGGGCCGGATGATGAGGTATTTCCCCATCTCATTGAGCTGAATTTTCGCCATAAATATCAAGCGTACTATGGTGTCCCGCCGGTGGAGAGATTGTCAATTCAACCCGTTCATGTCCACCAACGCCATCGCGTTGTGACACTATTCAAAGATATGTATATTACAGGGTGGTTGGGGCATTACCGTCTCTCCTCTTCTCCCGAGCAGTTGACGTTTTTATACCACGTTGGCCTGGGCAGCCGAAATTCCCAAGGGTTCGGCATGTTCTGCCTAACGGGTAAGTAATTCGATTCCTCTATTGTCGTCGACCTCCAATCGTGCAAAAACCCCAGGGGGTCGACGACATTTGTTTTTGTCACTTGGTTCCTACAGCTATCACGGGTGAGCGTGATTGACAGAATTTTTTGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGGG # Right flank : TAAGATATATATTACGTAAAAAATCACTTTAATCAACTATGTAGAAACTTACAAGTACCTGGAGGAAAAGTATGCACATCAGTCATAGTTCCCCTGAGATTATCGCTGTGGTATAATAAACTGCAAGTAATTGAGGTGGTGGAAAGTGTCATAGTTCCCCTGAGATTATCGCTGTGGTATAATAAACTGCAAGTAATTGAGGTGGTGGAAAGTGTCATAGTTCCCCTGAGATTATCGCTGTGGTATAATGTAACCGCTCTGCTATCTCTGCTTGCTCGAGTCATAGTTCCCCTGAGATTATCGCTGTGGTATAATAAAAGACTGGTGTTATGTCAAGAAAACGGACACGTTAAACAGAGAGAAATAGCTGAATTTATACAGCTACCTTTCTCTGATTAGCGTAGTAAGCAGCTTCAAATTCACATGGCGATACATATTCAAGAGCGGAATGACTTCTCTTACGGTTGTAGAAACATTCGATGTACTCAAAAATGGCTTGT # Questionable array : NO Score: 8.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2269411-2269642 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061473.1 Geobacillus sp. 47C-IIb chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 2269411 34 100.0 32 .................................. AAACTGCAAGTAATTGAGGTGGTGGAAAGTGT 2269477 34 100.0 32 .................................. AAACTGCAAGTAATTGAGGTGGTGGAAAGTGT 2269543 34 100.0 32 .................................. GTAACCGCTCTGCTATCTCTGCTTGCTCGAGT 2269609 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================ ================== 4 34 100.0 32 CATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Left flank : ACGTTTTTATACCACGTTGGCCTGGGCAGCCGAAATTCCCAAGGGTTCGGCATGTTCTGCCTAACGGGTAAGTAATTCGATTCCTCTATTGTCGTCGACCTCCAATCGTGCAAAAACCCCAGGGGGTCGACGACATTTGTTTTTGTCACTTGGTTCCTACAGCTATCACGGGTGAGCGTGATTGACAGAATTTTTTGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGGGGTTTGTATCGTACCTATGAGGGATTGAAACCTTTACGCAAACGCTCAGCCAGATCCTCGCTACACAGTTTGTATCGTACCTATGAGGGATTGAAACTATTTTGAAACGGAAGAGCGTAAACGCTATATTCCGTTTTTATCGTACCTATGAGGGGCGAAATAAGATATATATTACGTAAAAAATCACTTTAATCAACTATGTAGAAACTTACAAGTACCTGGAGGAAAAGTATGCACATCAGT # Right flank : TAAAAGACTGGTGTTATGTCAAGAAAACGGACACGTTAAACAGAGAGAAATAGCTGAATTTATACAGCTACCTTTCTCTGATTAGCGTAGTAAGCAGCTTCAAATTCACATGGCGATACATATTCAAGAGCGGAATGACTTCTCTTACGGTTGTAGAAACATTCGATGTACTCAAAAATGGCTTGTTTCGCTTCTTTTCGCGTACGGAATCGATTCGGATAGATACATTCTTTCTTGATTAAGCTATGAAACGACTCGATACAAGCGTTATCGTAACAGTTCCCACGTCTCGACATGCTCACTTGAAAATGGTGTTCCTGTAAGAGCTGCTGATAGTCATTTGAAGCATATTGGCTCCCACGATCCGAGTGATGGAGGACTCTCCCTGTTGGTTTCTCGTTGTTTAACGCTCGTTGTAAGGCTTTAATGACTAACTCTTTCGTCATTTGGTTATCGATATACCATCCTACGATTTTACGGGTATATAAATCCATGATGCT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 2270976-2271539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061473.1 Geobacillus sp. 47C-IIb chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2270976 36 100.0 30 .................................... CAGCCACTAAATCAATATCTTGTCTAATTG 2271042 36 100.0 30 .................................... TCATCACGATAGAACATATACGGTGTTCCT 2271108 36 100.0 30 .................................... CAGCCACTAAATCAAGATCTTGTCTAATTG 2271174 36 100.0 30 .................................... AGCTTGGCAGACGTACAGCTTGAGAACGGA 2271240 36 100.0 30 .................................... AAAAGAGGAGGAATCGAAATGAGCGAAGTT 2271306 36 100.0 30 .................................... TGTAGCTTTCTCGTCGAATACTCGTTAAGA 2271372 36 100.0 30 .................................... CGTTTTCTTGAGTTATCAGAACGCGCGGCA 2271438 36 100.0 30 .................................... GCGAAAGGCTTGCTTGCTTACATGCTTTCT 2271504 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Left flank : GGTCGTTTCAGCCATGCATAATACCCACTTTTAGAAACACCGAGAACTTGGCACATCTTCACCACGCGAAATTCATTTCGATGTTGAAAAATGAACGCGTAAATCACTTCTGGTTTCTGGTGAAGATGCCTAACGCCTTTTTTAGGATCGCTAATTCCTCCTCCAGCTCTTGATTGCGACGGCGCAATTCGATGATTTCTTGGTTTTGTGGCTTGATATTTCCTGAACCTACAAAGCTTGTACCATTGCTTTCTTTGTATTCTTTGACCCAACGGTGAAGAGTGTTGTATGCCAAACCTAACTCTTTTGCCACTTGGGCGATGGACTTATCCCCCTCCAAGCATAACTCAACGGCTTGAATCTTGTATTCTTGATCAAATGTTCTCTTTTTCATGATTGGACACCTCGAACTGATTGTAATTAAGTTTATTATAATCTCTCTGTTCTCCGTGTCCACTTTTTAGACTAACATCACATGAACGTAAACGGGTTGCATGTCA # Right flank : TACATGTCCAAAAAAGCCTGCAATCTCAAGGATCGCAGGCTTTTTTGTTTTAAAAAAACGAAACGGTGTTGCTTGAAAAAGGGGAACTGTTGTTGTTTTTTTAAAAAAGCGTCAGTTGTGTGGATGTGAGTTTCTTTTCTTGCACTGTTGGTTCCCCGAGAAGCAGTTGCATTTTTGCATATTGCTTTTCCGTTACGACCATTGCCCTTATGGATCCTTGAGGTGGTAGATTCTGCTTCAATCTCGCCAAATGTTTGTCTGTTGCTTCATGTCCATGGCAAACACGGCTGTAAACCGAAAATTGCAACATATCATATCCTTCGCTTAGTAGGAATGTACGAAATCGCCGGTATTCGCGCTTCTCCCGTTTGGTCACAACGGGTAGGTCAAAAAAGACGAGCAATCTCATAAATTTACTCATAAACATGCAATTGCAACGGAAGAAGTTCCGGCAATTTCAAAAGCGAAGGATCTTGGCTTCGGCTTGCAGTGACGAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 2307718-2309810 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061473.1 Geobacillus sp. 47C-IIb chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2307718 30 100.0 36 .............................. ATTCAAAATGGTGTGAATGCGGAAGAACTTGATAAC 2307784 30 100.0 37 .............................. TTCACTAGGCAGGTGAACTACGGACTGATCACCCGTA 2307851 30 100.0 35 .............................. AAAACACCGAGTTCAAGCATTTTACGGTACTTGGT 2307916 30 100.0 35 .............................. ATATCGACAACATCATTGCGGAGCATGTCCACGTC 2307981 30 100.0 38 .............................. CATCAAACGCCACGCGGCATATGAAAGCAATATTCTAG 2308049 30 100.0 35 .............................. ATATATAAATAGGCAATAAAATTCTAATAAAACTC 2308114 30 100.0 37 .............................. ACGAGGCAATCGGCTAACCCGCCTGGGTTGGCGTTTT 2308181 30 100.0 37 .............................. GTGAAAAAACTCAAGGCGCTCGGGTTTGACGCGTTCA 2308248 30 100.0 40 .............................. ATCGGTCCGTCAAAATAGACGACTTTTTCAACGTTTGAGA 2308318 30 100.0 40 .............................. ATCGGTCCGTCAAAATAGACGACTTTTTCAACGTTTGAGA 2308388 30 100.0 38 .............................. TCCGGGTTGGTCGCGTCGTTGTCATCTCGCAGCCGCTT 2308456 30 100.0 36 .............................. CAAGCGCATTGCTGCGTGGGTTAATCGGCAGAATCC 2308522 30 100.0 36 .............................. TTGATATATACACGGCTATCTTCTTCGCTCGTGGAA 2308588 30 100.0 35 .............................. TCCTCGAAATACAGGCGACCACTTTGTATAGACGC 2308653 30 100.0 36 .............................. CTCTTTGTCCGTCCCTCGTCCGCGTGAAGATCACGC 2308719 30 100.0 38 .............................. TTTATCGCACCGTTAGCGATCTTATCGGTAGTCACTGC 2308787 30 100.0 35 .............................. CGAACCCGGACGAGAATTTATACAGCGTGACCAAC 2308852 30 100.0 36 .............................. AAACGTGGGCTTGTCGATGTAAATATGCCGTTGCGA 2308918 30 100.0 36 .............................. ATGCATACGGCGTTCGATACACGACCACTGGCGGTC 2308984 30 100.0 36 .............................. AGCGCCTGGACATTATTGACGCTCACCCAAACAATC 2309050 30 100.0 35 .............................. TGTGAAGATCATCGACAATGGTCATGTAATTGAGG 2309115 30 100.0 36 .............................. ATGATTGTGATATTGTATCTGTATTTGGGGGGATAA 2309181 30 100.0 36 .............................. CCTCGTTTCCGTACCCTACCCGATGCCCCTTCTGAA 2309247 30 100.0 36 .............................. CTTTTCTTCCCTGCATAAATCTCGCCAGTAAAATTC 2309313 30 100.0 36 .............................. TAGAAACTCCTGCCGTTGGTGAGACTCCAGCGGCAG 2309379 30 100.0 39 .............................. TTCAACAGAAGATAGAGGAGCGCAAGCAAAGCAAGGCGG 2309448 30 96.7 37 .G............................ TAAATGGTTCACCGTACATGCTGATAACATCATACAA 2309515 30 100.0 35 .............................. TCCCTTCATCACCGTATAGGAAAAGGATGCGTTGT 2309580 30 100.0 38 .............................. TATCGGCACGTCAACAAAACACCTTGCCGCGCAGTTTT 2309648 30 100.0 36 .............................. GGGAACTGATCGAATCTTTAGTTGAGTTTCAAAAGG 2309714 30 96.7 37 .....................A........ ATCCGAGCCACACGAATTTCGATGTTATGGCCGGCTT 2309781 30 93.3 0 ....T............A............ | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 99.6 37 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : ACCAACAACGGGACTTGACGAGGCGAGGCAGCGGCGGTTGTTCGGACTGTTCGAGACGTATTTGTGATTATTTGAGGAAGAGGAGCGCCAATTACGAAACGAGGTGAACCAATGGAGACGAAGGAAGCGAAACAAGGAATGGAGTGGATCATCTCCGTACGAGCGGCAAGGAATCGAGAAAGAAAAGGTGGACACCGCGAAACGGATGGTGGCGAAATGATGCGACGTGACGGTGATGGGTGAGCTGCTCGGATTGCTGATGGAAGTAGTGGAAAACAGCAAAAGGAAAAGGCTCATGTGAGGGCTCGAGAAAGCAAGAAGCGAACTTCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGGTCGACGACACTTATTTTTGTTGCTGATTCCCTACAGCCATCATGGACGAACATGATTGACGGAATTTTTCGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGG # Right flank : CGATACTGTAAGAGTATACAGTTTATCGCCATGCCTTGATTGACGAAGTGGTGGCGGAAATCCGTCGGCTAAACGAAGAAAACTTCCGCGTACGCCAACATATCCCATATGTACACAAGTTCCAAAACCGGGAAGCATGGAACTGTTTAACGGCGATGGATGTCAATGAAATCAAAGAACATATTGCACCGCTCATTGTTCCGCTCAACGATGATGAACTGGCCAAGCGCTTTGATTTGCTGATGTATACAGTTGAGTTGGCGAAGTTGCAAACAAAAAATGCGACGAAGCCAATTCGGAGCATGATTCGCACCACAGAAGCGTTATCTAAGCTCGGATCGATTCCGCAAGTGCAGGAACAAAAATGCATCATCGAAAAGGTGTAGACGGAAGAGTTTTGGAGCGAAGCCGATAGTTTTGAATTGGAAGCTGTTCGCGAAGCGTTGCGCGATTTAGTGAAATTCCTTGAAAAAGAAACGCAAAAAATTTACTATACGAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //