Array 1 119727-120484 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMN01000009.1 Phocaeicola vulgatus strain AM09-18 AM09-18.Scaf9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 119727 33 97.0 33 ................................C TAGAAAAAGTAGTGACTGTGAATGATATCGTTT 119793 33 100.0 33 ................................. TCTGGTATCCATCCATTGCAACGCCGCCGGAAA 119859 33 97.0 32 ................................C TTGTCAATCAGGGTCGGAAGCTGCTTAAATGG 119924 33 97.0 34 ................................A AACCCCATTTGGCGTATAAATCCTTTGCGCGTTG 119991 33 100.0 33 ................................. CGGAACAGCCGCATGCCAATACGGCAAGACACG 120057 33 97.0 32 ................................A ATCATAGTTATTTACTTTTGATTTTTCCAAAC 120122 33 97.0 33 ................................G ATTATGCACCCTCGTCAAACGGGGCAAGGGATT 120188 33 100.0 33 ................................. ATTTTTATTAATTTGGTAGACGTGATGGATTGA 120254 33 97.0 32 ................................C CTATCCTGTGGAGAAGGAATTAACATGGTGGC 120319 33 100.0 32 ................................. GGGAAGCTTGCGCCGGATACATTATGGACGTT 120384 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 120450 33 90.9 0 ....................A.........G.A | TA [120469] ========== ====== ====== ====== ================================= ================================== ================== 12 33 97.5 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGCTATTGTCTGTTTGTGTCGATTGTTTTTTTCTTATCTTTATAAAATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18116-20773 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMN01000035.1 Phocaeicola vulgatus strain AM09-18 AM09-18.Scaf35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 18116 47 97.9 30 ...A........................................... ACGTCTTGTAGTCCTCATCCTTCCCGCTTA 18193 47 100.0 30 ............................................... AGTTAGCCGAGTATGCCCTAACAAAGTTCT 18270 47 100.0 30 ............................................... AGCCTGTCACAAGGGCACACCGTAGAAGGA 18347 47 100.0 29 ............................................... TCCTGCAAGGTTTAATTTATTCATTGCTG 18423 47 100.0 29 ............................................... TGGTATAGGGAGGTTACTCCGTAAAACTA 18499 47 100.0 30 ............................................... ATATTGTAGTTCGACAACCTCCTTTTACCG 18576 47 100.0 30 ............................................... TGAAAGTTCTTCAACCGCTGAAAAGCCTTT 18653 47 100.0 30 ............................................... CCTATCGATGATACTCATATAGGTATCCCG 18730 47 100.0 30 ............................................... ACAGTCCAATCAAGCAAGGGTACAGCATGA 18807 47 100.0 30 ............................................... AAGACCGATGAACAGGAATTCTCGACCGAT 18884 47 100.0 30 ............................................... CTTCTAGCCCTGAAGGATGTCAGGACACAA 18961 47 100.0 30 ............................................... GAAAGAAACAGGGAGAAACTTCTCGAAAGA 19038 47 100.0 30 ............................................... GTGAAAACACCTTCATTTTTGGAGAACCTG 19115 47 100.0 29 ............................................... GTATGGAAAGCGATTCAAAAACCTTTACA 19191 47 100.0 30 ............................................... TTAATATAATTCTGAACATCAACATAATTC 19268 47 100.0 30 ............................................... TATTTCGATTTCTATTCAAATTCCCAGTGG 19345 47 100.0 29 ............................................... TATTGCATAATATTAATAAGTCCGACCAT 19421 47 100.0 30 ............................................... CAACGCAACAATTTCCTGCATCAAGTCACA 19498 47 100.0 29 ............................................... TGAATATAAGAAACAACAACACGGGTTGT 19574 47 100.0 30 ............................................... TGTACCCTTTGGATATATCACTGGACAACT 19651 47 100.0 29 ............................................... TACGTTGTTATATGTTAGGCCAAGCAATT 19727 47 100.0 30 ............................................... CATAGCTTCTGACAATTTAGTACAAGAAGC 19804 47 100.0 30 ............................................... ACTGCCGGTGAACTTGATGACTTCACATCG 19881 47 100.0 30 ............................................... TACCGATTTAAATTTGGGAAGACCTTAAAA 19958 47 100.0 30 ............................................... ATGGTACTCTTTATACTGTCAGGGAAATTA 20035 47 100.0 30 ............................................... TAAACAAATCAGGAGAAAACTTCATATAAC 20112 47 100.0 30 ............................................... CCGTAAGAGCACCTTGAGTCTGAAGATTGA 20189 47 100.0 30 ............................................... CTGCATGAACTGGTACACAGCACCGGTCAT 20266 47 100.0 30 ............................................... AATGCCTAGAATATACCAAATACAAAACAG 20343 47 100.0 30 ............................................... CATACGTATATGCTTTAGAGGATTTGGATT 20420 47 100.0 29 ............................................... ACAAACTCAAAAAGCTCTTACGATGATAG 20496 47 100.0 30 ............................................... AAAATATGGTTTCATGTAAGTAATTATTAT 20573 47 100.0 30 ............................................... CAGCAGCTCCAGCGCCCATGCTAAGAGCTC 20650 47 100.0 30 ............................................... TATCCTCTCGAATTCTCCTCCTCTTGTCTA 20727 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 35 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //