Array 1 40347-35363 **** Predicted by CRISPRDetect 2.4 *** >NZ_QULS01000002.1 Faecalibacterium sp. OM04-11BH OM04-11BH.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 40346 33 100.0 35 ................................. TTTCTGCCTACCCCATCGCCGGCTTTTCCGCCGCC 40278 33 100.0 36 ................................. TCACAGTTTGTATAGACCCGGTACGCTGTATAGTGG 40209 33 100.0 35 ................................. CTCCTTTGTTTTAGGCTCTGTTTTTGGCTCTTCCG 40141 33 100.0 34 ................................. GGCTGTTTTGCTGTTGCTTTATCGATTGCTTTAT 40074 33 100.0 35 ................................. TGCATTGCTTCGCATTTTGCCACTTACACGGTTTG 40006 33 100.0 34 ................................. AACTCGGATGTCTGCTGCCATCCCTCTTATGTGG 39939 33 100.0 35 ................................. AAGGCCTTGCTGGTAACTGTGGTTATGGCGTACAC 39871 33 100.0 35 ................................. AAGCAGTTCATGGGAGAAATGGACGAAACACCATG 39803 33 100.0 35 ................................. GCCTACCCATGCGTAGCATTTTGCTACGTTGTCCC 39735 33 100.0 36 ................................. ACAAAAAGCTTTGAAGAGCACGGTTTTGTGATTGGA 39666 33 100.0 35 ................................. GTTATAGCCCAGCTCCTGCGCCATCTGGTTTGTGC 39598 33 100.0 34 ................................. CATTATCCCAGCGGCCTTTTGCACGGTTGAGGAT 39531 33 100.0 35 ................................. GCCGATGTCTGCTCCCGATTTGGCATCCCGACTGG 39463 33 100.0 34 ................................. TGGTACTGGTCGATAAGGCCTTGCAGCTCATAGT 39396 33 100.0 34 ................................. AAATTGTGCAGTAAAGGCCAGCACTTCGGCCCTG 39329 33 100.0 35 ................................. TTGGCCTGCATCGTTGATGCTGGTAAAGAAAATCC 39261 33 100.0 35 ................................. ATCTTGCCGTTGTGGCTGTAAGTGACGGGGCCGGT 39193 33 100.0 35 ................................. CATCCAGTATTTTGTTGTTTGCTCTGCACCTATGG 39125 33 100.0 34 ................................. CAATGCTTGCAGATGCTCCTGTTGGTGCGCTTGT 39058 33 100.0 34 ................................. CCAGCTTTTTGCAGTTTTAAATTGCTTTGCGCTG 38991 33 100.0 34 ................................. TTTGGCTCGTGTTGCCTTACAGTCGGATGCCGCC 38924 33 100.0 35 ................................. TTTTCGAATCCAGGTGAAAAAACACGAAAACAATA 38856 33 100.0 36 ................................. GCCCAAGGCTGCAAGTCTCGGGTCGTAGTATGTGAA 38787 33 100.0 34 ................................. AATGTTTGTGCCGGATTGACTTCCGCTTTCCGAG 38720 33 100.0 33 ................................. AATGTTTTTGTTACTTTGTGATAATTTTGTAAC 38654 33 100.0 33 ................................. TGCGCTGTTGTAGTTCATCGCTACACTGTTTTT 38588 33 100.0 35 ................................. ATCGCTACACTGTTTTCGATGTGATTGTATACGCC 38520 33 100.0 35 ................................. ATCGCTACACTGTTTTCGATGTGATTGTATACGCC 38452 33 100.0 34 ................................. ACTGTGTACGGTTTTCCTGTGTTTGCGTTACCGT 38385 33 100.0 35 ................................. AATGGCCTGCTGGGCTGTATGAACAGATGCAGGAG 38317 33 100.0 36 ................................. CCCTCGCCGGTTGCGGCGTAGGTGCTCCGGCGCGGC 38248 33 100.0 35 ................................. CCCCGCAAATCCCCTCAAAAAGAAAAAATCCCTCT 38180 33 100.0 34 ................................. CGAGCAGGAATATCATCCCGAACCCGGACAATGA 38113 33 100.0 37 ................................. CAATACCTTTGCCTCGACCGCTTCAACGGTCTTACAG 38043 33 100.0 36 ................................. ATGCCCCGAACGTTTACGGATACCTTACTGCTGAAC 37974 33 100.0 34 ................................. ATCAGCCCATACAACCCGGTGCCGCACTATAACG 37907 33 100.0 34 ................................. ATCTTCCAGCCGGCACTGATACTTGCCGATCAGA 37840 33 100.0 35 ................................. TGCGTTGCTTCGCATTTTGCCACTTACACGGTTTG 37772 33 93.9 34 ..........G..A................... ACAAGTGGTTTTTATTGACGACTATCTAGTATCT 37705 33 93.9 34 ..........G..A................... AGAGACGAAAACGTGGACAACGCGGCAACTATAA 37638 33 93.9 35 ..........G..A................... ATCTCGTCATGCAAGGCGTGATAGATTTCGTCAAG 37570 33 93.9 36 ..........G..A................... AACAAAAAGCTCAGAAGACGCCAAGAGACGGCAAAG 37501 33 93.9 34 ..........G..A................... TCGAGAATCTGCATCATGATGTGGATAGCCTGTT 37434 33 93.9 36 ..........G..A................... AGCTTTAGGACGTTCGCCTGTGCTGTTGCGATCATT 37365 33 93.9 36 ..........G..A................... AACAAAAAGCTCAGAAGACGCCAAGAGACGGCAAAG 37296 33 93.9 34 ..........G..A................... TCGAGAATCTGCATCATGATGTGGATAGCCTGTT 37229 33 93.9 36 ..........G..A................... AGCTTTAGGACGTTCGCCTGTGCTGTTGCGATCATT 37160 33 93.9 34 ..........G..A................... ACAGGTAGTTTTTATTGACGACTACCTAGTATCT 37093 33 93.9 34 ..........G..A................... ACAGGTAGTTTTTATTGACGACTACCTAGTATCT 37026 33 93.9 36 ..........G..A................... GCAGATCGTTGATTGTTGTTGCAGTGACTGTGCTTA 36957 33 93.9 35 ..........G..A................... GGTCTGGCTCCCAGAGGGAGCGCCTGCGGCGCTCC 36889 33 93.9 33 ..........G..A................... AAAAAATCGCCTATGCCGCCAGTAGATGGCCGG 36823 33 93.9 35 ..........G..A................... TGGCCTGTTGGTGCTCCTGCTGGTCGGCTGGCTGT 36755 33 93.9 36 ..........G..A................... AACTGGCGCAGATTGGTCTAACACACTAGACCTTGC 36686 33 93.9 35 ..........G..A................... TATTTCTCCCATGAAATACTTAAAATTGTCCCAGA 36618 33 93.9 33 ..........G..A................... TCCTTTTTTACAGTCTGATTCCGCCGCGCATAG 36552 33 93.9 36 ..........G..A................... CTTGTCGGTGTCCGGTATCCGCTGTTTATGTGTACC 36483 33 93.9 35 ..........G..A................... GGATTGCCTGTTTGACGTCTTTAATTGAGATGAGC 36415 33 93.9 34 ..........G..A................... CGAAAACAATACGTCTGGACAAAAGACGAAAAAG 36348 33 93.9 34 ..........G..A................... AAGCAAGCTATTGCGATGCGCAGAATATGCTGTG 36281 33 93.9 35 ..........G..A................... ATTTGGAATGCGTTTAAGTGCGGCGCGCGGCACTC 36213 33 93.9 33 ..........G..A................... ATGGGAGAAGTAGAAGCAACGCCCTGGATGCCG 36147 33 93.9 35 ..........G..A................... ATTTGGAATGCGTTTAAGTGCGGCGCGCGGCACTC 36079 33 93.9 36 ..........G..A................... TTGATAACGTACTGTGAAACCTCTTTCAGCTGCCTG 36010 33 100.0 39 ................................. GTTGCAATCATTCTGTGATATTCGTGGATGTTTTGTGGG 35938 33 100.0 35 ................................. CATATAGCCTGAACTTGGGACTCGTGTAGTCCTCA 35870 33 100.0 37 ................................. CGTTTCAACGGCCCAGTCTTTTTGTAGTCATAAATCG 35800 33 100.0 33 ................................. ATCACAGTAGATCGGCACCAGATCGCCCTCGTT 35734 33 100.0 37 ................................. TGTCTGAATGGCAGAAGAAAAAGCCCGCCACCCGGTA 35664 33 100.0 34 ................................. CAATGACCGGTAACGCAGCAGTGAGCCTGTACGA 35597 33 100.0 35 ................................. TCGTACTATGACCCGATGCTGGCAAACCTGGGCGA 35529 33 100.0 35 ................................. TTTGCACACCGAGTATACCACAAACAACCCTCAGG 35461 33 100.0 33 ................................. AACAGTGCAGGGACTACAAGACAGACGTGGATA 35395 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 74 33 97.9 35 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CTCCGTTTTTCTGGAAATGAGGTGCAATCATGCTGGTACTGATCACCTACGATGTAAACACCGAGACCTCCGCCGGACGCAAGCGGCTGCGCAAGGTTGCCAAGAAGTGCGTAGATCATGGGCAGCGGGTGCAAAATTCCGTGTTCGAATGCCTGCTGAACGCTTCGCAGTACGCAGTTCTCAAAGCAGAGCTGACCGCCCTGATCGACCCTGCCTTGGACAGTCTGCGGTTCTACCAGCTGGGCAACAACTACCAGACCAAGGTCGAGCACGTTGGACTGCACCCAGAATTTGCCCAAGACAGCGTGCTGATCTTTTGATGTCCGGCCAGTGCGAATCGGCAGCACACATGGTTTTCCGGGACGCTTCGCACCGGAAAACCAGCCGTTTGCGCGAGTAACGGTGTGATTTTGCGGTTTGGTTTGCAGACATCTCTTTGCAATTTGTGCAGAGAGGTGTATAATGAGACAAAAGCAGGGTGTTTTCTCTCTGTTTTTGCT # Right flank : TTAAAAAGCTATGGTAAAATCGCAGCGTCCGAAACATCCTGCGGTCTGCCGTTATTCACATACGGGTTATACCAGACATTCTGGAATATGCATCCTTCGATCCAAATGTTTTCGCACCAAATGCTCTCGCCGTTCTCCATGCGTCCCCGCAGCCGGATGCCGCAGGTCCATATTTTGTTTACACCGTTCGGGTTGATGCCTTCCCATGTGCAGTTGACGAACCAGATGTTTTTGCACCCCTCCAGCACCATGTTCGCGCCCTTCCAAAAGATCACGTTCCGAACTTCCAGATCTTCAACGTTGTTGACGATGATCTCAAAGTACTTATACTTTTTGTTTCCTCCGTCCACCACGCAGTTGCTCTGGCTCAGCGCCGCCGTCTGTGCACTTTCTGCCTCGCCCTTTGCCTGCTGCACGCTGTCCGCAGCGGCGGCCTTGGCTTTCTGTGCCTCTCCCGCTGCACCTTCTGCCCTGTCCGCCGCGCTCTGCGCGTCCTTTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : GTCGCCCTCCGCGAGGAGGGCGTGGATAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68647-69270 **** Predicted by CRISPRDetect 2.4 *** >NZ_QULS01000003.1 Faecalibacterium sp. OM04-11BH OM04-11BH.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================================================================== ================== 68647 23 100.0 43 ....................... TCGAAAGTAGCCATGAATCCATTAGGATGGACAAATTTCAACT 68713 23 100.0 44 ....................... TCTTTAACTTCGTCTTCGCTATAAGTCTTATTGAAATTTCAACT 68780 23 100.0 46 ....................... ATCCGCAGTTACCGATACCCACAACAGAGATGTTTAGATTTCAACT 68849 23 100.0 44 ....................... CCTTTGATCAGAGGCATGACTCTGATATCATCACCATTTCAACT 68916 23 100.0 43 ....................... TTTTCAGTCTCTGCGCGGAGACGCTTTTCTTCGGATTTCAACT 68982 23 52.2 110 ...........AACCCTCTC.GG CGCTGCGCGCCAGCTCTCCCGAAGGGAGAGCTTTTCCAGCTGCCACTTACCTTGTACTAAGCTCCCCCTTTCGGGGGAGCTGGCACGGCGTAAGCCGTGACTGAGAGGGT 69115 23 95.7 43 .C..................... AAGAAATTATAATCACCAAACTTGCCCTCACCGTATTTCAACT 69181 23 100.0 44 ....................... GATCATGAACCATCTTGGTGAACCGGTCAAGACCAATTTCAACT 69248 23 82.6 0 ...............G.AA...A | ========== ====== ====== ====== ======================= ============================================================================================================== ================== 9 23 92.3 52 TATCCCCGCAAGGGGACGGAAAC # Left flank : GCTACGGCACGGTGGTCGATCTTGCGTTTCCCGCCATCGACCCCGCCGCTGACGAGGCCGCGCTGGACTCCCTTGCCACGGTATACGCCGACCACATCCTGCACCTTAACCCGGACGCCGTGCTCTGTCAGGGCGAGTGCACCTTTGTGTACCGGGTAGTCCAGCGGCTGGAAGCCGCGGGCATCCCCACGCTGGCCGCCTGCTCCCGCCGCAAGAGCCAGGAGACCACCTGCCCGGACGGCAGCACCCTAAAGCGCAGCATCTTCGCCTTTGCAGGCTTCCGCCGCTATGGCTCGCCCTGAGCTTCCCGGTGCAGCTGTCCCCATTCAGCCGCCTGTTTCTCCATTTCGGTGAGCGGCTCGCACCCGCTTTTCCAGCCTCCTGCCAAAATGCTCTTTTATTTTTCGTATGGTTGTGGTATATTGGTCTTGAAATTGTGAAAGCTGCCCTGAAATCAAGTATTTTTCTCTTTTTCTTAGAACAGCTTTGCTATTTCAACT # Right flank : ACTCCGCACCAAAAATGGTGCGGAGTTTTTCTTTTGCGTGCCTTAACTTTTCGGTTTTCGTGGGCTTTTTCTCTATGAACAGAGCTGCTGCGGCATTTTCTCTGCCATGGCTTTTGTATTGCGACAAAATGTGCTATAATAGAGCCAAATTAAAGCATCTCTCACAAAATATACAATTATACTCTTCGTTTGTTGTGCAACTCTTCCACAATTTGTAAAGGAGATGGTATTTTGAACGTTCTCACCCTGCAGTCCACCTATGGCGGGCTGCTGCACGACACCGGCAAAGCGGTGTACCGTGCCGGTGGGCAGCGCGGCAGCCACAGTGAACAGGGCTGCCAGTTTTTGCGCGGTGTTTTGTCCGGCGCAGACTGGGCCCCGGTTCTGGACTGCGTGCGTTACCACCACGCCGCCGCGCTGCGCGGTGCTGCAAAGGCGCTGCCGGCCGATTCTCCGGCGTATCTGGTCTATCTGGCCAACCTGCTTTCCGGCGCGGCTGA # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.88, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //