Array 1 3533-2284 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB891114.1 Frankia discariae strain BCU110501 B056DRAFT_scaffold_109.110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3532 29 100.0 32 ............................. CAACGAAACCGAGAGTGCCGCACCGTGGGTGG 3471 29 100.0 32 ............................. CGAACACCCCGGCACCGCCCCGCCGGGCGGCA 3410 29 100.0 32 ............................. TCGGTCGGCGAGGACGGGGAGGGACTGCTGGG 3349 29 100.0 32 ............................. TCGGTCGGCGAGGACGGGGAGGGACTGCTGGG 3288 29 100.0 32 ............................. AGGAGCAGCAGGCCGGGCCGGTCCACGTCCCG 3227 29 100.0 32 ............................. CACGCGAGGACTGGCGACGCGACGCCCTGTGC 3166 29 100.0 32 ............................. CACGCGAGGACTGGCGACGCGACGCCCTGTGC 3105 29 100.0 32 ............................. CCGCACCGGGCGCCCACCGCCACCGACCCGCG 3044 29 100.0 32 ............................. TGGACTGGCAGCTCGCCGAGACCTATCCCGAT 2983 29 96.6 32 ............................G CCCTGCAGCCGATCGAAGCGGGCGTCTGGGGC 2922 29 100.0 32 ............................. CCATCGTGCGGCCGGTGAGGCCAGAGAGCCTC 2861 29 93.1 32 ...G........................G GCCGCGCGGGTCACCACCGCCGGGCCTCTGCC 2800 29 93.1 32 ...G........................G AGTTCGGCGGGTGGCTTGCCAGTGTGGTGGCG 2739 29 96.6 32 ...G......................... GCGCGCTATCAGGCCGGCGCGCGTGAGCGCGA 2678 29 96.6 32 ...G......................... GGCAGCGGCGCGACCTCGTCCGGGCGGTGGTC 2617 29 96.6 32 ...G......................... GCCATGACCGGGGTGTGCTGATGAGCCTCCTC 2556 29 96.6 32 ...G......................... GGCTGGGAGTGGCCTCGGCGGGTGCGGTGGTG 2495 29 96.6 32 ...G......................... GCCTGGGATCCGGCCCGGTGGGCCAGCGAGAA 2434 29 93.1 32 ...G........................G GCGTACGCGGCCAGCCGGCGTGCGTCCTTGTC 2373 29 93.1 32 ...G.................G....... GCGAGGCGGTGGCCGTGGGACCAGCGGCCGAA 2312 29 82.8 0 ...G........T........G.T....T | ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.9 32 GTCCTCCCCGCACGCGCGGGGATCTTCCC # Left flank : GGCCAGACGCACCCGGTGGGAAGATCCCCGCGCGTGCGGGGACGACATCATCTGACCGGGTCTGGGGCTGCCGGCGTGGGGAAGATCCCCGCGCGTGCGGGGACGACACTTGTTGACCTGCGGCTTTACTGCTCGATGGGGCCCAAATTTATCAGTCTCGTCGGAGCGGGCGGGTGGTGTCTGGCCGGGCCGGTGTGGTGGTTGACGGTGTCGGGCGGGGCCTGCTGGTCTGGCCCGCCTACCATGGCCACCTCACCCGGTGGATGATCGAGATCGCGGCGGGGGTCTTTGTCGGGAACCCCAGTGCCCGGGTCCGTGACCGTGTCTGGACCGTGCTCGCCCAGCGCGTCGGAGACGGCCAAGCCGTCATGATCGAACCCGCGGACAACGAGCAAGGCTGGGCCGTCCGCACCGCCGGCCGTGATCGCGGCTACCCGATCGACTACGACGGACTGATACTGTTCACCCGCCCACGCCGGTAAAACCCCAGCTCAGCAAGA # Right flank : CTCGTACCGGACGAGATGACGACGATCCGGTCCCTTGGCGTGGCTGCGAGCACGGCTGGCGGGTCGCCGTCGCCGTGGTGCTCGAGTGTCTACTTGACGCGTGCGTGGACGGGGCCGGACTTGCCACGGCTGTGTCGCTGGAGTTCGAACAGGTCGGTCGCGACCATGAGGTCCGTGAGGCGGGTGTAGCCGTAGGTCCTCAGGACGACTGCGGGGTGTTTGCGGATGGCCAGTCCGACGATCGACAGGTGGGTCCAGCCGTCGGGTCCGGTGTTCGTCGTGACCGCCTCGCGGAGCCGGCTGATGAGCGCCGTGTCCGCGCGCAGTTCGGCGGTCGTCGCCCGGGTGGGAGGCGCGACCGGGGCGGTCTGCGTCTTCTTCTTTGCCTGCGGGGCGGCGACAGTAATCTGCGGCGTGCCGGCATCCGCGCTCGGCATGGACGTCCCGGTTGCGCCGCTCGTCCTATGTGGGTGCGGCGGCGGGGCGGCCTGGGCGGGTAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3926-6516 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB891114.1 Frankia discariae strain BCU110501 B056DRAFT_scaffold_109.110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3926 29 100.0 32 ............................. CACGCCGGCAGCCCCAGACCCGGTCAGATGAT 3987 29 100.0 32 ............................. ACCGGGTGCGTCTGGCCGGGCTACGGAGGACC 4048 29 96.6 32 ............................T CCGCGGGGATGGCCGTGCCGGCGATGGCCGCG 4109 29 96.6 32 ............................T CATTTCCTTCCGGATTGTCGACGGCCGGTTGC 4170 29 100.0 32 ............................. ACGCCCGCGACACCGCACTGGCCGACGCCGAC 4231 29 96.6 32 ............................G TCGTCCAGGTCGCTGGTCGGGGTGGCCATGAC 4292 29 100.0 32 ............................. GCTCGTGGCCAGGCAGCGGCGCCAGCCCGGCG 4353 29 100.0 32 ............................. TCGCCGTCCTCCTGGAGGCGCAGGCCGCTACC 4414 29 100.0 32 ............................. GACACCCGGTCGACCGCCACGGCCGCTGTGGC 4475 29 96.6 32 ............................G CGGTCGTGGCCCGGGTCGGTGCGCGCCAGGAT 4536 29 100.0 32 ............................. GCGAACATCCCACCAAGAGCCAGAGCCACCAC 4597 29 93.1 32 ...C........................G AACAGGGCGAGGATCACGAGGGCGGGTAGCAG 4658 29 96.6 32 ............................G GATGACGCGCCGGGGGCGATCAACGCCCTGGT 4719 29 96.6 32 ............................T CCGTGATCACTGCCGGTGTGGCCGGCGCGCTG 4780 29 100.0 32 ............................. TCAGCCATGAGGAGGGCCGAGCGCGCATACGC 4841 29 100.0 32 ............................. TGACCTGGGGATGTGGCGAGACCGGCTCCGTC 4902 29 100.0 32 ............................. GTGCCCGCCACAGCTGAGCAGGCGGCGCTGCT 4963 29 100.0 32 ............................. CTCGGGGACAGCTACGCGGGGAAGGCCAACGG 5024 29 100.0 32 ............................. ACGTCCGGCGTCTCGCTCGGGAGCACGGCGTG 5085 29 100.0 32 ............................. CTGGAGCGTGCGCGGGAGGCGCTCAGCTCGGC 5146 29 100.0 32 ............................. ACCTCCTCCGCCGCCGCCAGACGCTCAGCCGG 5207 29 96.6 32 ............................G TCGTTGAGGCTGTCCACGGTCGTCGTCAGCGC 5268 29 96.6 32 ............................T GTCCGGCACCCGCGTACGTCCTGGTCACGGAT 5329 29 100.0 32 ............................. ATCACTGTCTCGGTGCCCGTGCTCGTGGCCGG 5390 29 100.0 32 ............................. TCCACAGGGACGCGACCCTTCACGGGGAGTTC 5451 29 100.0 32 ............................. CTGATCCTCCCAGCCATGCAGGCCGGATGGCT 5512 29 100.0 32 ............................. CTGTTCCGGCGGCCGACGCAGTTCGTCATCGT 5573 29 100.0 32 ............................. CCCGGATCTCCGGGGACATGCGGCCAGGTCTC 5634 29 96.6 32 ............................T CTCAGGGCCGCCCGCGCCGCCGGCTTCGACCG 5695 29 96.6 32 ............................G TCACCGCAGACGGCGCCGACCGTGCCAGCTGC 5756 29 96.6 32 ............................T TCATTACGAGCATGCCGCAGCACCCCCGACGC 5817 29 100.0 32 ............................. ACAGATCGTCTGATTCGGCGGGTCCGGGCTGA 5878 29 100.0 32 ............................. GGCTGCGTATCGATTTCCGCCACCCGCTCGCC 5939 29 100.0 32 ............................. ATCTCATCCTCGGGCGGCATGAGATCCGCCAA 6000 29 100.0 32 ............................. GCAACGGGGACCACGCCTGCCAGCGTTGCCCC 6061 29 96.6 32 ............................G TCGCCAGCACAGAGGCCGGTCGCGCCGCAGGC 6122 29 100.0 32 ............................. CGGCCGGCCGGTGCGCTCGTAGCGGGTGCCCC 6183 29 100.0 32 ............................. CGCCCCTCGGCTGGATCAGCCCGATCCGCTGG 6244 29 100.0 32 ............................. GTAGGGACCAAGGACCGCAGGATCTACCCACT 6305 29 96.6 32 ............................G GCCCGATACCGGGTACGGCGTCGCGACCTGGA 6366 29 93.1 32 ........T...................A CCGGGCCCATCGTCGTGTCCGTACACGTGGCG 6427 29 96.6 32 ..................A.......... TCCGTCAGTTTCCCTCTCGGTTCTCTGGCCAC 6488 29 93.1 0 .......T....................G | ========== ====== ====== ====== ============================= ================================ ================== 43 29 98.4 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : CGGTGCCGGGGTGTTCGGGGAAGATCCCCGCGCGTGCGGGGAGGACCCACCCACGGTGCGGCACTCTCGGTTTCGTTGGGGAAGATCCCCGCGCGTGCGGGGAGGACTCTTGCTGAGCTGGGGTTTTACCGGCGTGGGCGGGTGAACAGTATCAGTCCGTCGTAGTCGATCGGGTAGCCGCGATCACGGCCGGCGGTGCGGACGGCCCAGCCTTGCTCGTTGTCCGCGGGTTCGATCATGACGGCTTGGCCGTCTCCGACGCGCTGGGCGAGCACGGTCCAGACACGGTCACGGACCCGGGCACTGGGGTTCCCGACAAAGACCCCCGCCGCGATCTCGATCATCCACCGGGTGAGGTGGCCATGGTAGGCGGGCCAGACCAGCAGGCCCCGCCCGACACCGTCAACCACCACACCGGCCCGGCCAGACACCACCCGCCCGCTCCGACGAGACTGATAAATTTGGGCCCCATCGAGCAGTAAAGCCGCAGGTCAACAAGT # Right flank : GCTCTGCGAGTCCCACATCCAGACCAAGAAGATCCATGGTCAAGAAGGGAGCGGCCATGTACGCGCCGGGGCTGCGCGACAGCGACTGGTAATAGCGTCTTTCGTGGTCGGTCTGGTGCGGGCGGTAGGGTGATCGTGCCGTTGGGGCACGTGTGGACTGGGGGGTCCGATGCCGACGACCTACTACCTCGCCTGGTGGAACCTGGAGAACCTCTTCGACGAGGAGAACTCACCGCGGCGGACCGAGAAACTCGCCCGCGCCCTCGGTGACGACCTCGCCGGCTGGACGCCACAGCTGCGGGACCGGAAGATCTCCCAGCTGGCGTCGGTGATCGCGCAGATGAACGGCGGTGCGGGCCCGGACCTGCTCGGGGTGTGCGAGGTGGAGAACCGGTTCGTCCTCGAGCTCCTCGCCACCGCGGTCGCCGACCGCCTCGGTGACCGCCGCTACGAGATCGTGCACGCCGACACCGACGACGCCCGCGGGATCGACGTCGCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3716-2956 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB891132.1 Frankia discariae strain BCU110501 B056DRAFT_scaffold_125.126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3715 28 100.0 33 ............................ TCCTGCCCCAACCCCTGTCCGGTACGGCTCCGA 3654 28 100.0 33 ............................ TGTCACACGATCTTCGATCCGAAGATCGTCGGT 3593 28 100.0 33 ............................ TCTCGGCGAGCCTGACGGGCTCCCGCGGCCACG 3532 28 100.0 33 ............................ GCCCGCGCGTGGATCGCCGCCCGTCGCTGGGAG 3471 28 100.0 33 ............................ GCCGGCGACCGCGCGTTCGACTGCGGCCTCGTA 3410 28 100.0 33 ............................ GTCGGTCGACCCGTCCATCCACCATCACGCCCG 3349 28 100.0 33 ............................ CCCATCTGGATCGACCTGGAGACGGACGCGCCG 3288 28 100.0 33 ............................ CGCCGCCCAGGCGACCAGGACCATGGCCGTCAC 3227 28 96.4 33 ....................A....... GTCTCTGATGGAGACCTTCACCACCCATCCCGA 3166 28 100.0 33 ............................ CACGGTCTTCCTGGACACCCCGATTGCCGTCGC 3105 28 100.0 33 ............................ GCAAGGGTGGAGCAGGAGCGCGACCACGCGGCC 3044 28 92.9 33 ...C...................T.... CTGGAGATACTGGCGCTCGCGGCCCGCATCACC 2983 28 82.1 0 .................A...TC..GT. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 33 GTCGTCCCCGCACGCGCGGGGGTCTCCC # Left flank : CGACCCTGATCGGCCGTGAGGCCGGCCCATGTCAAGCCGGCACCCTGAACCATTCTTGCCAGACCGTCGTCTTTCATCTGGAATGCCGGTGTCACCTTGCCTACGTCGTGGAGGCCACACAGCAGCGCAAACAGCGACCTCCCGCTCCCATCGCTACACCCATCGAGGTGATCTTTTGTGGCGGCGGGCAAAAAGCGATCCCAGATAAGCTCGGCCATGGCCGCGGTATCGAGTAGATGGCCGAGCAAAAGATGCATCGACCCTTGCGCATTCGACTTGCCCCACACAACCGCCAACGCGTCGTCCACAGGCCCCCCAAGCGACAGTCGAGCAGGCTATTGAACCACCCATGCTCTCGCCCCCAGCCGCCACGCTCCGGCCCAGACGGCAGCTTCGGACGTGCCGGCGGCTATGGACTCGGGTGGAGAGCCCTTCGGCCAGACGATGCATCGACTGATAAATTCGAGCCTTGCCAGCCTGCAAAACCCCAGGTCAGCAAG # Right flank : GCACCGGGCGATGGCGGAGCGGACGAGCCTGAGCGCCGCGCGACTGTCCCGGGTGGAGAACGGCACCTCGCTGCTGTCACTGCCCGAGATCGGCGAGTGGGCGAGTGCCGTCGGCGCGGACACCGACGCTCGTGCCCGCCTGCACCAGCCGGCCGAGGCCGCGCACACCCCGGCAGTGGAGGCCTTCCGCCACGGCGGCCCGGACCTGCAGCGCAGCGTCCTGGACCTGGAAGCCCGCGCCGGGCGCGTCGTCACCGTGCAGCCCACGATCGTCCCGGCGCTGCTGCAGACGGTTGCCTACGCGCGCGCGGTCCTCAACCTCGCCGACGTCACCAGCCAGGACATCTCCGCGACGGTCGCGCTGCGGCAGCGCCGCCAGGAACTTCTGCATGACTCGGCGAAGCGCTTCGGCTTCCTCCTCACCGAGGCCGCGCTGCGCTGGCCCGCCGGCGACGCGCACCGCATGGCCACGCAGTACGATCGCATCGCCCAGATCTCGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //