Array 1 1-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804694.1 Peptoniphilus sp. HMSC062D09 Scaffold84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TGAGGCTTTAGATTTCTCGTACCTCTCACTTA 62 29 100.0 32 ............................. AAACAACCCTGACGGCAGTACAAGAACGACTA 123 29 100.0 32 ............................. ACTTCATCTATTCTTGGTTCTATTGATTCAAT 184 29 100.0 32 ............................. AGAAATTACCAACTTTGGGAAAAACTTTATTA 245 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Left flank : | # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804716.1 Peptoniphilus sp. HMSC062D09 Scaffold170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ATGACTTAGTAGATGACACAACAGAATATCGT 62 29 100.0 32 ............................. ACTTACAAGCTCCCTCAAAGTCATATACACTT 123 29 100.0 32 ............................. TGGGTAGGGTTGATCATCCGGAAACTCAACTC 184 29 96.6 32 ..............G.............. GGCATAAAACCTATCTTGGGTATGGAGGGTTA 245 29 96.6 32 ..............G.............. AACATTAGGATATTTTGAATTTCTTAATCTAA 306 29 93.1 0 ..............G.............C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Left flank : | # Right flank : CTCCACCTTGATAACCCAAAGCTAGAGTTGCGAGTAGTCCCCGCGTGTGCGGGGGTGATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGTGCGGGGGTGATCCTTGATGTGTCTGTTGCTGCCCCAACTTCAAACTGTAGTCCCCGCGTGTGCGGGGGTGATCCTCAAGCAGTTTAAGGAGTTGGCATCTACCAGAGGTAGTCCCCGCGTGTGCGGGGGTGATCCTCGTCTTGCTTCAGTCCTTACAAGTGATAGTTCGTAGTCCCCGCGTGTGCGGGGGTGATCCTGTGGTGATTTGATGATTGAACTAGAAAAAAAAGTAGTCCCCGCGTGTGCGGGGGTGATCCTAAACAACCCTGACGGCAGTACAAGAACGACTAGTAGTCCCCGCGTGTGCGGGGGTGATCCCTTACAA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Alternate repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 555-1132 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804716.1 Peptoniphilus sp. HMSC062D09 Scaffold170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 555 29 100.0 32 ............................. CAAGCAGTTTAAGGAGTTGGCATCTACCAGAG 616 29 100.0 32 ............................. CGTCTTGCTTCAGTCCTTACAAGTGATAGTTC 677 29 100.0 32 ............................. GTGGTGATTTGATGATTGAACTAGAAAAAAAA 738 29 100.0 32 ............................. AAACAACCCTGACGGCAGTACAAGAACGACTA 799 29 96.6 32 ............................C TTACAAAGCCATCAAAGGCAGTGTTCGGTCTG 860 29 100.0 32 ............................. CCTTGTAACCGTTACAAATACTGAATTACAAG 921 29 93.1 32 ..............G.............C ATTTCTTGGTCTGATAACACATTATTATCTTT 982 29 93.1 32 ..............G.............C TCAGTGAGTGACTGATTTAAAGCTTGGATTGT 1043 29 93.1 31 ..............G.............A GGAAATGAAGTAAGAGAAATGTTTGATATGA T [1068] 1104 29 93.1 0 ..............G.............C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Left flank : ATATCGTGTAGTCCCCGCGTGTGCGGGGGTGATCCTACTTACAAGCTCCCTCAAAGTCATATACACTTGTAGTCCCCGCGTGTGCGGGGGTGATCCTTGGGTAGGGTTGATCATCCGGAAACTCAACTCGTAGTCCCCGCGTGGGCGGGGGTGATCCTGGCATAAAACCTATCTTGGGTATGGAGGGTTAGTAGTCCCCGCGTGGGCGGGGGTGATCCTAACATTAGGATATTTTGAATTTCTTAATCTAAGTAGTCCCCGCGTGGGCGGGGGTGATCCCTCCACCTTGATAACCCAAAGCTAGAGTTGCGAGTAGTCCCCGCGTGTGCGGGGGTGATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGTGCGGGGGTGATCCTTGATGTGTCTGTTGCTGCCCCAACTTCAAACT # Right flank : CGCAGACAAAAATTACTGGAAAAAGTCAATTAAGTAGTCCCCGCGTGGGCGGGGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTCATCTTGTTTGATGGAGATACATAAGGCACATGTAGTCCCCGCATGTGCGGGGGTAATTGCCCTGTTTTTGTGTTTTTTCGTATTGAATAGCTTCTATCTACAAGGTTTTTTATATTTCATCATTATTCTTCACTAAAAAAGAACATCCAACTTATCATTGTTAGAGTGCTTCTAATTCTTATATTCTTTCATATATTTTTTTAGTATTCCCCAAGGGTCATCTATATAAAAAAATTTCCCACCTAAGTTATTTGGCTCAGTGAGTATAGATATAATCTTCCTCAGTTTCATCAACAACTTATAAAGTATTATTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Alternate repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 882-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================== ================== 881 28 92.9 33 NN.......................... TAGAAGGAACTGAATATGACGAAGAAAACACCG 820 28 100.0 33 ............................ TGTTTTTTTCCAAATAAGGTATAACTTCTTAAA 759 28 100.0 33 ............................ CTTATCCCTGGCTGCGCGTCCCATGCGCTTTAC 698 28 96.4 94 ...........................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 576 28 82.1 33 NNNNN....................... CGCTTTGGAAGTGAACCATAAGTTTCTTTTATA 515 28 100.0 33 ............................ GTCCATAAAAAAGGCTATTTTATCCGCGTTGTC 454 28 100.0 33 ............................ TACCATAGCCGTGCGTGACGGCAAAGAGAGAAG 393 28 100.0 33 ............................ TGACATAGAGGGTATTAATTGATACCCTCTATA 332 28 96.4 33 ..............T............. TAGAAGTTAGAAGTCATGAGGATAAAATTCCTT 271 28 96.4 33 ..............T............. TTAAAAAGCAAAATGTTAGATAAAGATAATGCC 210 28 96.4 33 ..............T............. CAGTGATCTCTCTTGGTGGATAAGTTCCGCCTA 149 28 96.4 33 ..............T............. TAAGAGTTGTGCTTGTGTAAAGCACATAAAAGA 88 28 96.4 32 ..............T............. ACTACGCAGAGCAACTAAAAAAATCTAACGAC T [62] 27 27 92.9 0 ..............T............- | ========== ====== ====== ====== ============================ ============================================================================================== ================== 14 28 96.2 38 GTAGTCCCCGCGTGGGCGGGGGTGATCC # Left flank : AACTCAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTGGATTCTTTTATAAGGTTCAAGCCAAGCCCTAGTAGTCCCCGCGTGTGCGGGGGTGATCCTTGACATGGTTATTGATGGAAGTTTAGAGGTTTGTAGTCCCCGCGTGGGCGGGGGTGATCCTGTTTTTTTTACGATTTTGTTGTTGAACGACTGGTAGTCCCCGCGTGGGCGGGGGTGATCCTGGAAGTAGTACAACTAAAAAATCATATTAGTAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : GTAGTCCCCGCGTGTGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1620-1409 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1619 28 96.4 33 N........................... TATTTTACAAGAAAAAGAGCATGACGCATTAGA 1558 28 100.0 33 ............................ TAATAATGAGAGTAAATGGCGAATCCATGAACA 1497 28 100.0 33 ............................ TCGTTTCTAGCATCTGTAAGTGTTCGATTTCCT 1436 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTAGTCCCCGCGTGGGCGGGGGTGATCC # Left flank : TAAAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCCAACAAAGAATTATTTATCTTTGCGAGGAATACGTAGTCCCCGCGTGGGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCGCGTGGGCGGGGGTGATCCTGAATGATAGCTCAATCATAGCCACCACGCGAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTTCCTGCAAATAATATCGGCAGAATAAGTTATTGTAGTCCCCGCGTGGGCGGGGGTGATCCTGGAAGGAATTTACAATAAATCACCTACAAGCGGTAGTCCCCGCGTGGGCGGGGGTGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTATATCATGGATCTTTGACTTGTCTAACTCAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTGGATTCTTTTATAAGGTTCAAGCCAAGCCCTAGTAGTCCCCGCGTGTGCGGGGGTGATCCTTGACATGGTTATTGATGGAAGTTTAGAGGTTTGTAGTCCCCGCGTGGGCGGGGGTGATCCTGTTTTTTTTACGATTTTGTTGTTGAACGACTGGTAGTCCCCGCGTGGGCGGGGGTGATCCTGGAAGTAGTACAACTAAAAAATCATATTAGTAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1869-1718 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1868 29 100.0 32 ............................. TCCTGCAAATAATATCGGCAGAATAAGTTATT 1807 29 100.0 32 ............................. GGAAGGAATTTACAATAAATCACCTACAAGCG 1746 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTAGTCCCCGCGTGGGCGGGGGTGATCCT # Left flank : NNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCATAGATTTCCCTTTTCCATATGATGTTTTTACGAGTAGTCCCCGCGTGGGCGGGGGTGATCCTGCTTCTTCATAAGTTGTAAATAACTTTCCATCGTAGTCCCCGCGTGGGCGGGGGTGATCCTGATAGGATTATTTGTAATTTCATAATCTCAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTTCTTCAAATAGAAATCAATATCCAGATAAAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCCAACAAAGAATTATTTATCTTTGCGAGGAATACGTAGTCCCCGCGTGGGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCGCGTGGGCGGGGGTGATCCTGAATGATAGCTCAATCATAGCCACCACGCGAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCCCCGCGTGGGCGGGGGTGATCCTATTTTACAAGAAAAAGAGCATGACGCATTAGAGTAGTCCCCGCGTGGGCGGGGGTGATCCTAATAATGAGAGTAAATGGCGAATCCATGAACAGTAGTCCCCGCGTGGGCGGGGGTGATCCTCGTTTCTAGCATCTGTAAGTGTTCGATTTCCTGTAGTCCCCGCGTGGGCGGGGGTGATCCTCTATATCATGGATCTTTGACTTGTCTAACTCAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTGGAT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 2359-2025 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2358 28 92.9 34 NN.......................... ATAGATTTCCCTTTTCCATATGATGTTTTTACGA 2296 28 100.0 33 ............................ TGCTTCTTCATAAGTTGTAAATAACTTTCCATC 2235 28 100.0 33 ............................ TGATAGGATTATTTGTAATTTCATAATCTCAAA 2174 28 100.0 33 ............................ TTCTTCAAATAGAAATCAATATCCAGATAAAAA 2113 28 100.0 33 ............................ CAACAAAGAATTATTTATCTTTGCGAGGAATAC 2052 28 92.9 0 ..........................NN | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.6 33 GTAGTCCCCGCGTGGGCGGGGGTGATCC # Left flank : ATTCATTGCTTGGTAGTCCCCGCGTGGGCGGGGGTGATCCTGAAAAGATTAAATACGCAGAATTAAAATTAAAGTAGTCCCCGCGTGGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTGTTGATGATGGTGGCAAGTATGTTGAGGGGTCGTAGTCCCCGCGTGGGCGGGGGTGATCCCATTCACTGTCATAAAGGATTCAATTTCTTCTTGTAGTCCCCGCGTGGGCGGGGGTGATCCTGAATTTTTGACCCCTAGCCAGTAAGACCTCTTGTAGTCCCCGCGTGGGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCGCGTGGGCGGGGGTGATCCTGAATGATAGCTCAATCATAGCCACCACGCGAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTTCCTGCAAATAATATCGGCAGAATAAGTTATTGTAGTCCCCGCGTGGGCGGGGGTGATCCTGGAAGGAATTTACAATAAATCACCTACAAGCGGTAGTCCCCGCGTGGGCGGGGGTGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCCCCGCGTGGGCGGGGGTGATCCTATTTTACAAGAAAAAGAGCATGACGCATTAGAGTAGTCCCCGCGTGGGCGGGGGTGATCCTAATAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3339-3065 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3338 30 100.0 31 .............................. GTAGCATTAGCAAATGAAGCAGAAAAAAGAT 3277 30 100.0 31 .............................. CGAACGCAAATAAAATAATTGGTTGGTGCTG 3216 30 96.7 31 .............................C TGGTTGTCCCGTTGTGGTTGCAGTAGAGAAA 3155 30 100.0 31 .............................. AGTAATTCTGATGCTGATGATTATAGTGACG 3094 30 90.0 0 ...........................NNN | ========== ====== ====== ====== ============================== =============================== ================== 5 30 97.3 31 AGTAGTCCCCGCGTGGGCGGGGGTGATCCT # Left flank : ATAGCTGAGTAGTCCCCGCGTGGGCGGGGGTGATCCCCCCACGCATTAAGCCTAACTCTGCCACACTTCGTAGTCCCCGCGTGGGCGGGGGTGATCCCTACAGAAAAAAGGGAAAACCAATTTACACCCCGTAGTCCCCGCGTGGGCGGGGGTGATCCTAATCTTTCTCATTCTCCATTCGTCTATAATCTAGTAGTCCCCGCGTGGGCGGGGGTGATCCTTCATTCTGACTAACAGACATTCTTTCTGCAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCCAATAACAAATGGTACATCATAATGATTAAAACGTAGTCCCCGCGTGGGCGGGGGTGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTATGGCTCAAAAACTGGGCATAACACCAAAAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCCCCGCGTGGGCGGGGGTGATCCTGCAGGTATCATGTATGAGGGTATGGAAGTAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTTCTCTGGCTTGGTCAATTAGATTCATTGCTTGGTAGTCCCCGCGTGGGCGGGGGTGATCCTGAAAAGATTAAATACGCAGAATTAAAATTAAAGTAGTCCCCGCGTGGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTGTTGATGATGGTGGCAAGTATGTTGAGGGGTCGTAGTCCCCGCGTGGGCGGGGGTGATCCCATTCACTGTCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAGTCCCCGCGTGGGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 6 4075-3497 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4074 28 100.0 33 ............................ TCAAGAAGAAAGAGAGGAAGTTGTAATGGACCT 4013 28 100.0 33 ............................ TAACCATCTCTTTGCGGAGTTGGAAAGATTAAG 3952 28 100.0 33 ............................ TAGGAAAATTGTCATGGTATCAACTCCAACTTT 3891 28 100.0 33 ............................ TAAAGATGGCTACAAACTGATAAAGATAGCTGA 3830 28 100.0 33 ............................ CCCCACGCATTAAGCCTAACTCTGCCACACTTC 3769 28 100.0 33 ............................ CTACAGAAAAAAGGGAAAACCAATTTACACCCC 3708 28 100.0 34 ............................ TAATCTTTCTCATTCTCCATTCGTCTATAATCTA 3646 28 100.0 33 ............................ TTCATTCTGACTAACAGACATTCTTTCTGCAAA 3585 28 100.0 33 ............................ CAATAACAAATGGTACATCATAATGATTAAAAC 3524 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 33 GTAGTCCCCGCGTGGGCGGGGGTGATCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCCCCGCGTGGGCGGGGGTGATCCTCGGTGATGTAAGTTACATTACTGTTAAGGGTGGTAGTCCCCGCGTGGGCGGGGGTGATCCCTAACTGGTGTATCTGCTCCAAAAAAGGGGCTTGTAGTCCCCGCGTGGGCGGGGGTGATCCTACCAGCTAAATCCAGCAAATCTAATTGACTAGGTAGTCCCCGCGTGGGCGGGGGTGATCCTAGTCATAGTCTCACCTTCCTTTGCTTAATGTAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCCAAGACGGAAAAGTTATTCCAAGCGATAAGAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTATGGCTCAAAAACTGGGCATAACACCAAAATAGTAGTCCCCGCGTGGGCGGGGGTGATCCTGTAGCATTAGCAAATGAAGCAGAAAAAAGATAGTAGTCCCCGCGTGGGCGGGGGTGATCCTCGAACGCAAATAAAATAATTGGTTGGTGCTGAGTAGTCCCCGCGTGGGCGGGGGTGATCCCTGGTTGTCCCGTTGTGGTTGCAGTAGAGAAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTAGTAATTCTGATGCTGATGATTATAGTGACGAGTAGTCCCCGCGTGGGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4232-4504 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4232 29 93.1 32 NN........................... TACATTAAGCAAAGGAAGGTGAGACTATGACT 4293 29 100.0 32 ............................. CTAGTCAATTAGATTTGCTGGATTTAGCTGGT 4354 29 100.0 32 ............................. AAGCCCCTTTTTTGGAGCAGATACACCAGTTA 4415 29 96.6 32 G............................ CACCCTTAACAGTAATGTAACTTACATCACCG 4476 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 AGGATCACCCCCGCCCACGCGGGGACTAC # Left flank : TTTTCTGTAGGGATCACCCCCGCCCACGCGGGGACTACGAAGTGTGGCAGAGTTAGGCTTAATGCGTGGGGGGATCACCCCCGCCCACGCGGGGACTACTCAGCTATCTTTATCAGTTTGTAGCCATCTTTAGGATCACCCCCGCCCACGCGGGGACTACAAAGTTGGAGTTGATACCATGACAATTTTCCTAGGATCACCCCCGCCCACGCGGGGACTACCTTAATCTTTCCAACTCCGCAAAGAGATGGTTAGGATCACCCCCGCCCACGCGGGGACTACAGGTCCATTACAACTTCCTCTCTTTCTTCTTGAGGATCACCCCCGCCCACGCGGGGACTACTTTCTTATCGCTTGGAATAACTTTTCCGTCTTGGGATCACCCCCGCCCACGCGGGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCACCCCCGCCCACGCGGGGACTACAGAAGTCAAAACTCGACTCGATATTTTTGGGTAGGATCACCCCCGCCCACGCGGGGACTACTCCAAAAAGGACGCTGTTAAACTTAGAAATTTGGGATCACCCCCGCCCACGCGGGGACTACCAATGGTATTGAGTAACAACTCTGTCTTACCTAGGATCACCCCCGCCCACGCGGGGACTACAGGCAGGTATCCTGTCGTACTCCTCCTCAAACAGGATCACCCCCGCCCACGCGGGGACTACCTCAATTAGCTCTCCAGTGATGTCATCTTCTCTGGATCACCCCCGCCCACGCGGGGACTACGTGTAAGTATGTTAGATTTATACGTTGGATTAGGGATCACCCCCGCCCACGCGGGGACTNNNNNNNNNN # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCCCCGCCCACGCGGGGACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 8 4935-4663 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4934 28 100.0 33 ............................ AGAGAAGATGACATCACTGGAGAGCTAATTGAG 4873 28 100.0 33 ............................ TGTTTGAGGAGGAGTACGACAGGATACCTGCCT 4812 28 100.0 33 ............................ TAGGTAAGACAGAGTTGTTACTCAATACCATTG 4751 28 100.0 33 ............................ CAAATTTCTAAGTTTAACAGCGTCCTTTTTGGA 4690 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTAGTCCCCGCGTGGGCGGGGGTGATCC # Left flank : AAAAAGTGGGAGGAGTAGTCCCCGCGTGGGCGGGGGTGATCCCACTAATATTATCTCCATCTGGGTCGTTAGCCTGTAGTCCCCGCGTGGGCGGGGGTGATCCTCAATATCCAGCCAGTAGAAGCTTATGACTATCGTAGTCCCCGCGTGGGCGGGGGTGATCCCGACTTCCATTTCTAATCTGTCGTCTTGGACGTGTAGTCCCCGCGTGGGCGGGGGTGATCCCGACTTCCATTTCTAATCTGTCGTCTTGGACGTGTAGTCCCCGCGTGGGCGGGGGTGATCCCTATTGTGTCTTTATATTTGTCATAAGCCTTTTGTAGTCCCCGCGTGGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCCTAATCCAACGTATAAATCTAACATACTTACAC # Right flank : TACCCAAAAATATCGAGTCGAGTTTTGACTTCTGTAGTCCCCGCGTGGGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCCCCGCGTGGGCGGGGGTGATCCTCGGTGATGTAAGTTACATTACTGTTAAGGGTGGTAGTCCCCGCGTGGGCGGGGGTGATCCCTAACTGGTGTATCTGCTCCAAAAAAGGGGCTTGTAGTCCCCGCGTGGGCGGGGGTGATCCTACCAGCTAAATCCAGCAAATCTAATTGACTAGGTAGTCCCCGCGTGGGCGGGGGTGATCCTAGTCATAGTCTCACCTTCCTTTGCTTAATGTAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 5665-5149 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5664 28 100.0 33 ............................ TAAGGCGATAGATCCTGCAGAAACTAATAGACT 5603 28 100.0 33 ............................ TCCTTATAAACTCGTTATATACTTGTCTTAGCT 5542 28 100.0 33 ............................ TAAAAAAGAAAAAGATAGATAGAGAAATTAATG 5481 28 100.0 33 ............................ TGAGTTAGCCAGTCCATGGAAAAAGTGGGAGGA 5420 28 100.0 33 ............................ CACTAATATTATCTCCATCTGGGTCGTTAGCCT 5359 28 100.0 33 ............................ TCAATATCCAGCCAGTAGAAGCTTATGACTATC 5298 28 100.0 33 ............................ CGACTTCCATTTCTAATCTGTCGTCTTGGACGT 5237 28 100.0 33 ............................ CGACTTCCATTTCTAATCTGTCGTCTTGGACGT 5176 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTAGTCCCCGCGTGGGCGGGGGTGATCC # Left flank : CCAGGAGAAAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTTCTTTCAATTTATCATTCACGCTTGGAGATGAGTAGTCCCCGCGTGGGCGGGGGTGATCCTACCCTATGACCTCTTGATGAAACAGTTTGACTGTAGTCCCCGCGTGGGCGGGGGTGATCCATAGGTCCTGCCCACAAGTTGGACATTTAAAGTGTAGTCCCCGCGTGGGCGGGGGTGATCCTTATGGATAAAAAATTAAAAAAGGTATTTCAAAGTAGTCCCCGCGTGGGCGGGGGGTGATCCCAAGATGTTAAAAGTCGATAAGACAATTATGAAGTAGTCCCCGCGTGGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCCCCGCGTGGGCGGGGGTGATCCTCCCAATGTCTAAGCTAGAGAGAGGCGACCTAG # Right flank : CTATTGTGTCTTTATATTTGTCATAAGCCTTTTGTAGTCCCCGCGTGGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCCTAATCCAACGTATAAATCTAACATACTTACACGTAGTCCCCGCGTGGGCGGGGGTGATCCAGAGAAGATGACATCACTGGAGAGCTAATTGAGGTAGTCCCCGCGTGGGCGGGGGTGATCCTGTTTGAGGAGGAGTACGACAGGATACCTGCCTGTAGTCCCCGCGTGGGCGGGGGTGATCCTAGGTAAGACAGAGTTGTTACTCAATACCATTGGTAGTCCCCGCGTGGGCGGGGGTGATCCCAAATTTCTAAGTTTAACAGCGTCCTTTTTGGAGTAGTCCCCGCGTGGGCGGGGGTGATCCTACCCAAAAATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 6945-5879 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 6944 29 93.1 32 NN........................... GCTCCTTTTGATATTGAGTTTCTTAACTCTTA 6883 29 100.0 32 ............................. GAGATAAAGTATGGAGGTAGTGACTATGACAG 6822 29 96.6 32 ............................C TGAAGAGTTTGAAGGTATCTATGAGCCTGAAA 6761 29 100.0 32 ............................. AACTAGACCTACATATAAATCTATCATGCTTG 6700 29 100.0 32 ............................. TAAAGGTATGGATAAACACTGCACTGGGAGAG 6639 29 100.0 32 ............................. AACCCATTTGCAGATGACGAAGAACTTGCAAA 6578 29 100.0 32 ............................. CTTATGTGTTACTGAGTCTATGAGGTATTTTT 6517 29 100.0 32 ............................. CTGCAATCCTAATCGGTGATGTAAGTTACATT 6456 29 100.0 32 ............................. TAGATACTGTCGTTTCAGGATATCCCATCCCT 6395 29 100.0 32 ............................. TACTGCACTACAAAAAGAAAAGTCTGACCTAG 6334 29 79.3 92 .......................NNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 6213 29 93.1 32 NN........................... ATGACGATATTGAGTTTATACCAGGAGAAAAA 6152 29 100.0 32 ............................. TCTTTCAATTTATCATTCACGCTTGGAGATGA 6091 29 100.0 32 ............................. ACCCTATGACCTCTTGATGAAACAGTTTGACT 6030 29 96.6 32 ............................A TAGGTCCTGCCCACAAGTTGGACATTTAAAGT 5969 29 100.0 32 ............................. TATGGATAAAAAATTAAAAAAGGTATTTCAAA 5908 29 96.6 0 ............................C | G [5885] ========== ====== ====== ====== ============================= ============================================================================================ ================== 17 29 97.4 36 GTAGTCCCCGCGTGGGCGGGGGTGATCCT # Left flank : TTTAAGTGTAGTCCCCGCGTGGGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCCTGCCTCAGCAAGTGCCAAGTTCCCGTCATAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTGGCTTTCTCGTACTTCTCACAGTCCTTTTGATGTAGTCCCCGCGTGGGCGGGGGTGATCCCAACTGTATTTGATAAATCTCCAATTCTTTTTGGTAGTCCCCGCGTGGGCGGGGGTGATCCTTTTAGCTTTAAGGCTAACGACCCAGATGGAGAGTAGTCCCCGCGTGGGCGGGGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAGATGTTAAAAGTCGATAAGACAATTATGAAGTAGTCCCCGCGTGGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCCCCGCGTGGGCGGGGGTGATCCTCCCAATGTCTAAGCTAGAGAGAGGCGACCTAGGTAGTCCCCGCGTGGGCGGGGGTGATCCTAAGGCGATAGATCCTGCAGAAACTAATAGACTGTAGTCCCCGCGTGGGCGGGGGTGATCCTCCTTATAAACTCGTTATATACTTGTCTTAGCTGTAGTCCCCGCGTGGGCGGGGGTGATCCTAAAAAAGAAAAAGATAGATAGAGAAATTAATGGTAGTCCCCGCGTGGGCGGGGGTGATCCTGAGTTAGCCAGTCCATGGAAAAAGTGGGAGGAGTAGTCCCCGCGTGGGCGGGGGTGATCCCACTAATATTATCT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 11 7253-7042 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804746.1 Peptoniphilus sp. HMSC062D09 Scaffold501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7252 28 100.0 33 ............................ TGGCTTTCTCGTACTTCTCACAGTCCTTTTGAT 7191 28 100.0 33 ............................ CAACTGTATTTGATAAATCTCCAATTCTTTTTG 7130 28 100.0 33 ............................ TTTTAGCTTTAAGGCTAACGACCCAGATGGAGA 7069 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTAGTCCCCGCGTGGGCGGGGGTGATCC # Left flank : TGAATTTATTGGCGAAAATAACCTTGTGGGATATAACGTAAACTTCGACATACAATTTTTAAACGAAGCCTTGGATAGAGAAAATTTGCCAAAAATAAAAAATAAAGTTTATGACATCATGCAATTTGTAAAAAAAGAAAACTTATTTCTTAAAAATTATAAACTTAAGACAGTTTTGAAAACCTATGGAATTGAGGAAGAAGTACCTCATAGAGCATTGGAAGACTCAAGATTGGAAGAAAAATTAATTTTGAAAGTGAAAAAATTATTGGACACTTTAAAATAAAAAAGGCAAAATCATGGGATCTTTTAAGTGTAGTCCCCGCGTGGGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCCTGCCTCAGCAAGTGCCAAGTTCCCGTCATAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCGCGTGGGCGGGGGTGATCCTGCTCCTTTTGATATTGAGTTTCTTAACTCTTAGTAGTCCCCGCGTGGGCGGGGGTGATCCTGAGATAAAGTATGGAGGTAGTGACTATGACAGGTAGTCCCCGCGTGGGCGGGGGTGATCCCTGAAGAGTTTGAAGGTATCTATGAGCCTGAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTAACTAGACCTACATATAAATCTATCATGCTTGGTAGTCCCCGCGTGGGCGGGGGTGATCCTTAAAGGTATGGATAAACACTGCACTGGGAGAGGTAGTCCCCGCGTGGGCGGGGGTGATCCTAACCCATTTGCAGATGACGAAGAACTTGCAAAGTAGTCCCCGCGTGGGCGGGGGTGATCCTCTTATGTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //