Array 1 252659-251430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSGU01000050.1 Escherichia coli strain upec-70 upec-70_ctg_1435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 252658 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 252598 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 252538 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 252478 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 252417 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 252357 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 252297 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 252237 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 252177 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 252117 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 252057 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 251997 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 251937 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 251877 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 251817 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 251757 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 251697 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 251637 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 251577 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 251517 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 251457 27 92.9 0 .......................C-... | T [251438] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 262285-261715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSGU01000050.1 Escherichia coli strain upec-70 upec-70_ctg_1435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 262284 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 262224 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 262164 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 262104 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 262044 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 261984 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 261924 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 261864 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 261804 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 261744 28 85.7 0 ....................T...C.CT | C,A [261718,261721] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //