Array 1 94074-93679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENDL010000004.1 Escherichia sp. XD97 E_coli_RXD97_ctg0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94073 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 94012 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 93951 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 93890 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 93829 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 93768 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 93707 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121022-119773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENDL010000004.1 Escherichia sp. XD97 E_coli_RXD97_ctg0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121021 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 120960 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 120899 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 120838 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 120777 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 120716 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 120655 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 120594 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 120533 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 120472 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 120411 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 120350 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 120289 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 120228 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 120167 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 120106 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 120045 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 119984 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 119923 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 119862 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 119801 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //