Array 1 391687-394336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKYV010000143.1 Klebsiella pneumoniae strain Kp_HUCA_Bac_52 NODE_243_length_574765_cov_58.370064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 391687 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 391748 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 391809 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 391870 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 391932 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 391993 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 392054 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 392115 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 392176 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 392237 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 392298 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 392359 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 392420 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 392481 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 392542 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 392603 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 392664 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 392725 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 392786 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 392847 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 392908 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 392969 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 393030 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 393091 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 393152 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 393213 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 393274 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 393335 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 393396 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 393457 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 393518 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 393579 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 393640 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 393701 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 393762 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 393823 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 393884 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 393945 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 394006 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 394067 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 394128 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 394189 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 394250 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 394308 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2360-1361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKYV010000144.1 Klebsiella pneumoniae strain Kp_HUCA_Bac_52 NODE_245_length_8187_cov_69.383781, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2359 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 2298 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 2237 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2176 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2115 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2054 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 1993 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 1932 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [1879] 1878 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1817 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1756 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1745] 1694 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [1678] 1631 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1570 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1510 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1449 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1388 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //