Array 1 906932-904977 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHH01000001.1 Haemophilus haemolyticus strain M19066 M19066_HUY4190A117_cleaned_ctg_1576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 906931 32 100.0 34 ................................ ACTGAATAATTATGCAAATAAAAAAGCCTTTAAA 906865 32 100.0 34 ................................ CTCTTGAGACTCAACCTTGACCCATTGGCCATTA 906799 32 100.0 33 ................................ AAGAATTTCGGAAAATTTGACCGATCCAGATTG 906734 32 100.0 33 ................................ CAAGAAATGAAGAATATTCACTATGCCCAAAAA 906669 32 100.0 35 ................................ ACTGAATAATTATGCAAATAAAAAGCTTTATGTAT 906602 32 100.0 34 ................................ CTTAACACGCCAGAGGGTGCGGATTGGGATAGAG 906536 32 100.0 34 ................................ CTCATCTCCATTCCCCAAACGATTAGCATAAACA 906470 32 100.0 34 ................................ GCCTAACCATGATGGGAAGTGAATGTAGTTAGCG 906404 32 100.0 34 ................................ TGCAAAAACTTATTTAAACTTGTCATCTATAAAC 906338 32 100.0 35 ................................ ATACTCTTCTAAATTGTTGTTATCAAATTTAACTA 906271 32 100.0 35 ................................ CGATACTTTCATTCGGCGAGGCGGTTTAAGTAGAT 906204 32 100.0 35 ................................ GCCAGTTTCAGACGCGAAAATAACAGTTGGGGCAA 906137 32 100.0 34 ................................ TTGACAAAATTGGCAAAATTAAGATCTAATGATG 906071 32 100.0 34 ................................ TGCAGCAGAATATCACTTACTCCGTACTCTGTAT 906005 32 100.0 36 ................................ GATTCCTTCGCTATTTTCAAAGATCGCCTTGTGGAG 905937 32 100.0 35 ................................ TTTAGACACGCTTTTTCACGGAAAATCTCACTCAA 905870 32 100.0 34 ................................ AATTTATCACCGCTCACCATTTTTTTTAATCTGA 905804 32 100.0 34 ................................ ATTTAAAAGATTTTCGCAGTATTCGACTTTTTCG 905738 32 100.0 35 ................................ TTTCAATCCTTGGTGCGCCATCAATTACAATGAAA 905671 32 100.0 34 ................................ TGATTGAAAAAGAATAAGAAAATTAAACAAAAGG 905605 32 100.0 35 ................................ GGTAAATTGTGGGCAATTTATCAATAAAATCAAAC 905538 32 100.0 33 ................................ CATTTTTAGATCCTCGTGTTATTTGTTGTTTAG 905473 32 96.9 33 .............C.................. TTCCGAATTGCATCAGCAGAAGCCCATGGTTTT 905408 32 96.9 34 .............C.................. TTTTAGATTGATTGTTCACGGCTTTTTGTAATCC 905342 32 90.6 36 ......A......G.T................ AAAGCGTGATCAACTTCAACAAAGAATATGAAAAAC 905274 32 90.6 35 ......A......G.T................ CCATTTTTCCGACCCGATCAAAACAAGGGGTCAAA 905207 32 90.6 34 ......A......G.T................ AAACGCATAATCACGTCAGAAATCGCCATTTTTT 905141 32 90.6 35 ......A......G.T................ CACAGGGGCGCCACGTTTTTAAAAGTTTGTGTAAA 905074 32 90.6 34 ..........CT.C.................. ACCAAAGGCCAATATTCTCACTGCGAGATTGCCA 905008 32 84.4 0 ......A...CT.C.......C.......... | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 97.7 34 GCAGCCGCCTTCGTGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCAGGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTTCGGGCGCAATATTCGGTCTTTGAATGCGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTATTGGAAACCTACGATCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCATAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATATATTTAAAGACGTACTTATCATTTAGTTCGCTAACCTATTGTTCTCATTAAAATCCTGATAGGATAGCGATCTTCGTTTTCTTTAACAATTTGGATGACTTAATCTATTTGTATAACGGCAATACAGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTAGGTAGGGA # Right flank : TGTAATCACAATCAAATTACCGTTATTAATACGGGCAGCTGCGTATTTAAGGAAGGATGAAAGAAGACAAAACGACTATGTCAGTAAATGGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAATATAATGATTTTTGGCCGCTCTTGTTTATATGATTTTAATTCAACTAATTTAAAAGATTAACATGCTCTAAAAATTCTTCTTCTGTTAATACTGTAATATTTAGTTCCTGTGCTTTGGTGAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGACACAGAACCACTTACTTTTGCGCCTAGCTGTTGTAGTAATGCTTTTGCTTCGTTGCGGCCCATTTGAGTGAGGGTGCCGGTGAGAACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACAGTTTCCCAATGTACACCTTGTGCGATTAAATCCTCAACAACGGCAACATTATGCGCTTCACGCCAGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGTGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //