Array 1 157477-153407 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRL01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1257 (=ChDC F186) F186_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 157476 30 100.0 36 .............................. GAGGAAGAACAAGAATTTTTTATTGTATTAGGTGAT 157410 30 100.0 36 .............................. GAAAAATTAGATAAACAAGAAATCTTTAAGGTAGTT 157344 30 100.0 36 .............................. GCTAAAAGCATTAATTAGCACATTCATAGCCTACTA 157278 30 100.0 36 .............................. TCTGAAGAGTTGAGAAGTCAAGTTTTAAAGGTTGTA 157212 30 100.0 37 .............................. GAGGAAAAGAAAGCGAAATTAATTGGAGAAGCATTTG 157145 30 100.0 37 .............................. AGTTGGATATCTACAACAGAATTATTTTTTAATCTCC 157078 30 100.0 36 .............................. ATTGTAAATATTTTATTATTTTTAACTTTAATGAAA 157012 30 100.0 37 .............................. ATACTTATGAAGAAAAGGCAGTTGAAGGAGTTACCAA 156945 30 100.0 35 .............................. CTAGGAGTTTAAAAATGGAGAAATCAAGGATATTA 156880 30 100.0 35 .............................. TTTTCTCTCCTTAATAAATATTTTTGATATTTTAT 156815 30 100.0 37 .............................. TTTGTAGTAATAGGAGAATACAGAGAGCATTTAATCA 156748 30 100.0 35 .............................. CTTTGCTATTTAGCTTAGAAGCATTGTAAGTAACT 156683 30 100.0 35 .............................. GGTAATTCATCATTGATACTAAATACTAAGCCCTC 156618 30 100.0 37 .............................. TTGATCTTCTGGGAAATAGTTATCTGTAGTTTCTGAA 156551 30 100.0 36 .............................. GGTAAAAGTTGATGGATATGGATATGCTGTTGACAT 156485 30 100.0 35 .............................. ACAGAAAAAACTGTATTTTTAAAAGTTGAAATACA 156420 30 100.0 36 .............................. AGTAAATCATCTAAATCAAAATCTTTTATTAATTCA 156354 30 100.0 36 .............................. CAATTAGCAGTTGCAATCTTTCAATGTCGGGGAGAC 156288 30 100.0 35 .............................. TACGGAAGTAGAGGATTATCAATAAGAGATTTTAT 156223 30 100.0 37 .............................. GTAAATTCTAAATTTCCACTATAACCACCTATATTTG 156156 30 100.0 36 .............................. ATATCAAATACTTTACTTGCAGATGAAACTGCTAAT 156090 30 100.0 37 .............................. TTGATTAAAGATAGTTTTGAATATACACCAAATAAAG 156023 30 100.0 36 .............................. GTCATTGATGATATGGTTGCTAAAGAAAAAGTTTTT 155957 30 100.0 35 .............................. AGTAGCTTACTTATTACAAAATTCTTTAAAAGCAA 155892 30 100.0 36 .............................. GCAACTGCTTTCAATGTTTTTTCTTCTATCATCTTA 155826 30 100.0 36 .............................. TCCCCAAGCTCTATGTATCATTAAATACGCATTACT 155760 30 100.0 36 .............................. GATGTTAAAAGATGAAGCCAGTGCATTACAAGATGT 155694 30 100.0 35 .............................. TTCATCATAAATAGCCTGATGTGTTTTATTCTTTA 155629 30 100.0 36 .............................. AAGAACTTTCAAGAGATATTCAAAAGTATTGTGATA 155563 30 100.0 35 .............................. GAGCTAAAAAATAAAGAATTTTCTTATCTTAAAAA 155498 30 100.0 36 .............................. TTTTGCTTCTTTTGCTATTGCTTCTTTCATTGAATA 155432 30 100.0 37 .............................. TACATTCAGAAAATAAACAAAGAGGAAGAACAATTTA 155365 30 100.0 38 .............................. AATAGAGTAGGAAGAACAAAGATAGAAAAAGATTTTTA 155297 30 100.0 36 .............................. TTAAAAAAAATAAAAATTAAGGAGGTATATAATGGA 155231 30 100.0 37 .............................. ATTAGATTGATGCACCATATAGCAAGACTTTTTTAGA 155164 30 100.0 38 .............................. TATAATCATTTGGAGCTGGTGTTGCCGTACATGCTAAC 155096 30 100.0 36 .............................. GGTGTATCGGGGTCAGCTAGATTAGTTACTATTCTA 155030 30 100.0 36 .............................. TTAACAAAGCCTTGATAGTTAATAAATCTAGCTTCT 154964 30 100.0 36 .............................. TCATCTGTTTCTCTCAAAGCCTTGTTAGTTCCACCA 154898 30 100.0 37 .............................. GTCGAAACAGGAAGCACAGGGGAATTAATAGCATTTG 154831 30 100.0 37 .............................. ACTAAAAAATGGGATAGAAAGGTATACAAAGATATTA 154764 30 100.0 38 .............................. ATAGGTGCTGTATTAGGTAAGATTTTAAAACCTCTCCC 154696 30 100.0 38 .............................. TACATTCAGAAAATAAACAAAGAGGAAGAACAATTTAT 154628 30 100.0 35 .............................. ATTGAAGCGAGAGACATAGAATTTTTTAATATGGA 154563 30 100.0 37 .............................. GAGGTTGAAAAAGTTACAGAGGAACTAAAATTACCAG 154496 30 100.0 37 .............................. ATAGTTATTAACCTAACTTGTTTCCATAGCTTCACCA 154429 30 100.0 37 .............................. CCTATAACTTTTAAACCTGTTTTAGCTCCATCTGGTA 154362 30 100.0 35 .............................. TACTCTGATAAATGGGTTTACTGTGAATATGGGTA 154297 30 100.0 36 .............................. AAACTTAGCTCTTGTATCTCTTATAGACATTCCCCA 154231 30 100.0 38 .............................. GACGTCATTTCTTTAAATGCTTTTACTACTCTTTTTGG 154163 30 100.0 36 .............................. GAATTGAATCCCAATGATTATATTGTTATCGAAAGA 154097 30 100.0 36 .............................. TAAAAAAAGAGAGTTAGAAATAAGTTGTCCACGCTG 154031 30 100.0 36 .............................. CTTCATAGTTCTTATTTTCTGTTCCTAATCTAATTA 153965 30 100.0 36 .............................. GAATTGAATCCCAATGATTATATTGTTATCGAAAGA 153899 30 100.0 35 .............................. ATTAATATCCTCTTAAATCATCTTCAACTAATCCA 153834 30 100.0 35 .............................. AGAATACAGTTCCATTTGGTTGTCTTATTATTGTA 153769 30 100.0 36 .............................. AATAAAGTAGTTGTATTTAATGTTGGAACTGGAACA 153703 30 100.0 37 .............................. CAAAACTACTTAGGTACTAACTACTTTGGTGGTGGAC 153636 30 100.0 35 .............................. ATGCAATTATGTCAGGTGGAAATGAGGATATAAAA 153571 30 100.0 38 .............................. TTTAAACATTAGAAAAAATATGGGTTTAAATATAAAGT 153503 30 96.7 38 .............................G GTCAACAAAAGAAAATATTGTTATTCCTAATGTAGGTA 153435 29 90.0 0 .......................AA-.... | ========== ====== ====== ====== ============================== ====================================== ================== 62 30 99.8 36 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : ACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAGTTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGGAGTACATTTTTTATTGTGTTAAGTATAGCTTCATAAAAGTAAACTAAGAATTAAGTATTCATAAAGTAATAGAAAAATTAAAAAAACGAAATCCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCGAATTTCATAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAGTTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 482088-476735 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRL01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1257 (=ChDC F186) F186_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 482087 37 100.0 36 ..................................... TTGGTGGGAAGAAATACAAAATCTCTTCCCTATATA 482014 37 100.0 37 ..................................... TTATTTTTTCCATATCTATATCATCTATTTCAGATAA 481940 37 100.0 34 ..................................... TTAGCATAACTTGTCATGAACCCTAACTCTTTCA 481869 37 100.0 35 ..................................... TATTAGAGAAAAGAGTAAACTTAGATAGAGTATTG 481797 37 100.0 36 ..................................... TTTCAATATCTTTCCAGATATTATCATATTGTCTTT 481724 37 100.0 39 ..................................... ATGCTCCCATGAAAGCTAATACAAATGTATTTTGCTTTC 481648 37 100.0 39 ..................................... TTAAGAGATAAATCACCAAATGCTGGTTCATTTGTACCA 481572 37 100.0 37 ..................................... ACAATTTATCAATCCAACTGGCTCAAATAAGAATTGT 481498 37 100.0 38 ..................................... TGAAGGTGATAAATGTAATATCGCAGAAGAACTAGATA 481423 37 100.0 36 ..................................... TTTAGTCATACTTATAGAACCCCTTATGTTTAAAGA 481350 37 100.0 39 ..................................... TAATTTGGTCAAGCCCTAAAACGTGATTGCTGATATTTA 481274 37 100.0 38 ..................................... TTATGTATAAATATTGATTTAAAGTAAATATTTGAAAA 481199 37 100.0 37 ..................................... AACTAGAGAGTCTGGGTCAAGACCATCTTCTTTTAGA 481125 37 100.0 34 ..................................... AAGTGTTAAATCTCCATCAACAGTAGTAGCTTCA 481054 37 100.0 41 ..................................... CTACTAAGAGAAATATTGTCAGCTGTTTCTTCACTATTTAC 480976 37 100.0 35 ..................................... CGTATTCCATATATAACCCCTCCTTTAAAATAGAG 480904 37 100.0 36 ..................................... TTAAATTTACATTAAGATTAACGGAAGATGAGAAAA 480831 37 100.0 40 ..................................... ATAGGAATATCTCAAGCTGTAAATGTTAGAAAACTTATAG 480754 37 100.0 36 ..................................... TCTATAGCTGCCATTTTTTCTACTACAGGTATTTCA 480681 37 100.0 38 ..................................... GTAAGCACTCTTAGCCTTGTTGTAATTGCTGCTTATTT 480606 37 100.0 37 ..................................... ATCAGTAGATAGAAAAAAGAACATAATGAGAGAAGTT 480532 37 100.0 38 ..................................... GTAAGCACTCTTAGCCTTGTTGTAATTGCTGCTTATTT 480457 37 100.0 37 ..................................... ATCAGTAGATAGAAAAAAGAACATAATGAGAGAAGTT 480383 37 100.0 34 ..................................... AGAAGTAAATAATTCATTTTGAAATTGCATCAAA 480312 37 100.0 36 ..................................... CATTGGTAAAACTACAAAATTTAAAATCATAAAATG 480239 37 100.0 36 ..................................... CAATAAAGAAAATTGGATTATTAATTTAATTCAGTT 480166 37 100.0 42 ..................................... TCATCCTTGTAGTATTCTTCTACTCCGAATGTTTCCATTTCA 480087 37 100.0 37 ..................................... TGCTATTAAAAATATGGATAATTTAGCTAGTATGCAA 480013 37 100.0 40 ..................................... TCTGCTCAACAGATTCAAGTTTTATATTTAATGTTTTAAT 479936 37 100.0 38 ..................................... TCATCTTAAGTATTCCATTCACCAAATACCATTCCTTT 479861 37 100.0 41 ..................................... AAAATGCAGTACTTACTAAAGCTATAGGAACTCTACCTAAA 479783 37 100.0 42 ..................................... CATAGCCTTTTGAGTTTCATAACTTACATTTTCTACCTTTAA 479704 37 100.0 40 ..................................... GATGGAGGAAGAGTAATGGTTCTATCAGAAGATATTTTAA 479627 37 100.0 44 ..................................... CTGGTGCAAAATATTTAAAATAATAATAAAGGTCTGCCACAGGA 479546 37 100.0 42 ..................................... TGCCAGTGTGGACTTTCCTTGAAGAAAAAGATTTTACTAATA 479467 37 100.0 38 ..................................... AAATTATCGTCAGCTAGTACATACTTTTCAAAAGTCTT 479392 37 100.0 35 ..................................... TAATCGAGAGACTGCTGGTTCAACTCCAGCCTTGA 479320 37 100.0 38 ..................................... TTACATAAAATTTCTTCCATATTAAATCTTTCTTTTAA 479245 37 100.0 35 ..................................... TTATTTTTTCTTTTCTTTTAGCTTCCTTTGTTTTT 479173 37 100.0 41 ..................................... TGATTGTTTGCAATCTGGAGAAGCATCTATCTTTTCATCTA 479095 37 100.0 38 ..................................... AGCAATTTGCTCTTGATATGCTAGGGGAAGAATACTCA 479020 37 100.0 34 ..................................... CCTTTAATAATTAAATCTTTTATATGTCTTACCA 478949 37 100.0 40 ..................................... TCCATTTAATACTTCCATTAATCCATCTTTTTTGTTTTCC 478872 37 100.0 34 ..................................... TGCAACTTTTTTTTCTTTTAATACTAATCCTAGA 478801 37 100.0 35 ..................................... ATCAGATGGAGCTCCTTTAAGCTCTTCAGGACTAA 478729 37 100.0 38 ..................................... CTGTCTACATTTAAACTCTTAACCTCATAATCTCCTAA 478654 37 100.0 41 ..................................... GCTGCTATATCATCAGGAGTGTGCGGTGGAATGTCTACTCT 478576 37 100.0 41 ..................................... TTCATTCTTGTACTGGTCATACAAATCTCTTACTCCACGCA 478498 37 100.0 40 ..................................... TAAATGTAGAATATAAATTTAAAGGAGATGTGATAATTAT 478421 37 100.0 37 ..................................... TACATATTTCATTTTTTCTCACCTTCTTTCTTATTAT 478347 37 100.0 39 ..................................... TCAAAGATATTAAATTAACAACGGCACCAGCTCCACTAT 478271 37 100.0 37 ..................................... TTCAACTTCTTCTAATGTTGGTAAACCAACGAGCATA 478197 37 100.0 36 ..................................... TAAAAATCTCCATCTTCCATACAAATATAGTCATTG 478124 37 100.0 38 ..................................... AAGAAAGTCTGACAATTTAGCTTTAACTTTCCTATTAG 478049 37 100.0 38 ..................................... TCAGCTTGGACTTTGTTAAGTCCTGTGAACCACATTGG 477974 37 100.0 39 ..................................... GTGCTAAAAGGGAATTGACAAGAACTAATGAATTGTCGG 477898 37 100.0 39 ..................................... TAGTAAGTAGAGCACCGCTCCATTTTAGACTTGTTAGGA 477822 37 100.0 40 ..................................... TGATAAATGAATCAGAAATAAATTTTGCTAACCAATAATA 477745 37 100.0 41 ..................................... CTTTTAATCCTTTAATCATAACAACTACTGTAAACATTTTT 477667 37 100.0 37 ..................................... TTTCTATACTCCATTGACTAATAATATCATAATTATT 477593 37 100.0 37 ..................................... TCCATAATATCCATTATTGAAATCTCTAGTTTGTTGA 477519 37 100.0 41 ..................................... TAACCAGTATTATCAAATTTATCTACAAGTGTCCAACTAAG 477441 37 100.0 39 ..................................... TCCAGATATGAAATGTGTTATATCTCCGTTTGAGAATAG 477365 37 100.0 37 ..................................... TGTAGATAAATATAATCTAAAAGCCATAGATAAGGAA 477291 37 100.0 39 ..................................... ATCTATTAGCAATTACTCCTAATATGGGAGATCATATAG 477215 37 100.0 34 ..................................... ATCGTACTTTGTAGTACTAGCCATATCTTCTATA 477144 37 100.0 35 ..................................... TACAAAAGATGGATATACTGAATTTCCTAGTTATA 477072 37 100.0 39 ..................................... CACAACAACAGGAATCGAAGACCCTGAACCAGCATACGT 476996 37 100.0 38 ..................................... TAAACTTTTTAATCTCGCTAAAAGCTTATCTTTATCTT 476921 37 100.0 38 ..................................... TAAACTTTTTAATCTCGCTAAAAGCTTATCTTTATCTT 476846 37 100.0 38 ..................................... TAAACTTTTTAATCTCGCTAAAAGCTTATCTTTATCTT 476771 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================ ================== 72 37 100.0 38 GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Left flank : ATAAAAAAAGTATTCTTTTTTCTCCCAATAGCTGTCCCTTGAGTTGAAATGTATAGATCCATAGATATTTCCCCCTATATTAAAAAATTTTTTAAATGAAAAATGTAATAAATATGGTTAAAATAGTTTAAAATAATAAAAAAATAATTATATATTATATATTAACATATATATTAAAAATAAAATAGAAAAACTTTAATAAAATAAATATTCTTTTAGAAAAAAATGTTTACAAATTTATAAATATATAGTATAATATAATAAATATAAAAACATTAGTGTAGAAAAAAGAGTATAAGGTCAATTTTTTAACATTTTATTTTTTTGTTTGTATTAAAAATTAAAATGCTCACTATTTTAAAAAGTTAAGAAAAAATAATAATAAATTTTTAGTACAAAACAGTTAAAATCCTCAAAATACGGAAAAATGTTCAATTTTTGCTACCATATAAAAAAGACTTCTTTCTACCATAAATACACCATCTATCCCTTTGGTAAGG # Right flank : TTTTGAACTCCTATTATTGTATTAAAATTAATACAAATAAGAGTTTTTTTATGGTTGTTTTATTGCAAAGAATATATAAATTGTTATATAATGAGATATATAATTATTGGAGGTGGAGAGAAATGATTTCATTTGGTAAAAATATTCAAAATAGAAGAGTTGCACTAGGTTTAGATGTAAGTGAATTAGCACAACTTGCAAACTATGCTAATAAAAGTTATATAGAAAGAATAGAAGATGAGAAAATGTACCCATCTGCTAAAAAACTTCCAGATTTAGCAAAAGCTTTGTCTTGGAAAATTGATGATTTATTTAAAAATGTTGAGCTTGAAGAAATTGAAACAGAGTATAGTTTAATACAAAATGCAATAAGATTTATTAAATCAATGGATAAAAAAGAAGTATCTTTAAAAACAGTTACTCTTTCAATAGATACATATAAAAAATATTATGCTTGTTTATTTGATAAATATATTAGAGAAAATTTTTTAAATAAGGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 1015075-1014051 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRL01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1257 (=ChDC F186) F186_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1015074 37 100.0 35 ..................................... TAATATAGGATAGTTATTTAAACAGCTCCATTTCT 1015002 37 100.0 40 ..................................... AATAATTGAAACATAAAATTATAATCAAAGATTGAATTAA 1014925 37 100.0 40 ..................................... TTTGCATTACAATAATCATTATAAATTATCCCAGCATAAC 1014848 37 100.0 44 ..................................... TCATTTTTTCAACTCCTCTTATTCTTAGAGCCATTTCTACCATA 1014767 37 100.0 38 ..................................... TAAGTTCAGCAATTAAGCCTATTACATCACCATCAAAT 1014692 37 100.0 37 ..................................... AGCTTTTTCACCTGGAGTATCAAAAGAAGCATTAATT 1014618 37 100.0 39 ..................................... TTACAAATTTCTTGATACATATCATTTATTACTTTACAG 1014542 37 100.0 37 ..................................... TTCCAAAACCTTTACCCCATATTACTTCTTTTGTTAA 1014468 37 100.0 40 ..................................... TCTCATAATTAAACTCATTAGTGATGTCCTTGAAGTAGAA 1014391 37 100.0 40 ..................................... TATACTTATATCCTCATTCTTTAGTTTCCATTCTTTATTA 1014314 37 100.0 40 ..................................... CAAGGGCTTTTACACCCTTATAAAGATAATATCCTCCTGC 1014237 37 97.3 35 ........................C............ TTTAATTTCCATATCTTTATATTCTTCTTCTGTTA 1014165 37 97.3 41 ........................C............ CTCCAGTACCATCTAACACTTGCATTAATCCATCTTTTTCT 1014087 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================================ ================== 14 37 99.4 39 GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Left flank : TATGAAAGTTATGATGTTTGGATAGAAACAATAAGAAAACAAATAAAGAAATCTGAAAGCACTCTAACAAATATAGAGTTTAAAAAGGTTGAACTTGAAGCAATACAAAAATATATAGCATAATAAAAAAAATATCAGCTGATATAAAGAAAATGGAGTTTAGCGACTCCATTTTTCTATAAAAAAATATATTGAAATTTAATATAAAATTATGTATAATAAGTTATAGTTTACAAGTTAATAAAAATATTGTAGAATATAAAAATAAGAAAAAAATTATGTAGAAAAAAGGTTATAAGGTCAATTTTTTAACATTTTATATTTAGATTTATATTAAAGAATAAGATGCTCACTATTTTAAAAAAAAGTAAAAAATCTGTAATAAAAATTTAATATAAAAGGTTAAGAATCCGTGAATTACGGAAAAATGTTCAAATTTTGCCACCATATAAAAAAAACTTCTTTCTAACATAAATACGACATTCATCCCTTTGGTAAGG # Right flank : TAAAATAGCTATTAAAAATATAATAAAATTTCTACATATTTTTATTAAAAGATTAAAATTTCATCATTTTTAAATTTTTTAAGTTCTAAACTTAGCAATTATTCGAAGTCAGTTTATAATGAATTTTTTTAATAAAAAAAATCTATTTAAAAAATAGATATCTAAACACAAAAAATGGAGTTCGTTATTAAACAAACTCCATTTATATATTCTACATATTATTTTTAGAATTTGGATACTATAAAAATTCTACTAATATTATATATAATATTTATTATTTTTTTAACCTAAAAATTATTTGTACAAGAACTATTATTACTAAAAATTTTATTATAGTTAAAAGCATAATATAATCCTCCTTTGAAAAAAAATAAAAACTATAAATTGACAATAATTACTTTAAGTGTTGCAGTTATAAAATCTTTTAGTATATCCATGTTATCAACTCCTTTTCACTAAAATTTTTAAAGATAAAACTATTTTTTTAAAAGCCAGTACCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //