Array 1 345230-345925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020030.1 Geobacillus thermodenitrificans strain T12 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 345230 36 100.0 31 .................................... AAAACAAAAAGAATCACCGTCACCTGAGTTA 345297 36 100.0 30 .................................... TTGGAGCTAAAACAAAAGATGCTGTTATAC 345363 36 100.0 30 .................................... TTACGCAACTGAACATCTTCCAATGTTAAA 345429 36 100.0 30 .................................... TTGGCGGTGCGAATTCTAACCGTCCCGGAA 345495 36 100.0 29 .................................... TCACGGAGCTTTACACAAATAAAGCCGGA 345560 36 100.0 30 .................................... CAACACCTTCCGCGCTGTCTCGTCTACTTT 345626 36 100.0 30 .................................... TTGATTAGCAATTTGACTTGGGAATTTAGC 345692 36 100.0 30 .................................... TTGATCGACGCCAGGAACTCCCGGAATTTC 345758 36 100.0 30 .................................... TTCTACCTCTACTCTCGATTCACGAATCGG 345824 36 100.0 30 .................................... TTCATGGGACAAGTTGAGCTAGCTGGTCAA 345890 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Left flank : CTATTCAAAGATATGTATATTACAGGGTGGTTGGGGCATTACCGTCTCTCCTCTTCTCCCGAGCAGTTGACGTTTTTATACCACGTTGGCCTGGGCAGCCGAAATTCCCAAGGGTTCGGCATGTTCTGCCTAACGGGTAAATAATTCGATTCCTCTATTGTCGTCGACCTCCAATCGTGCAAAAACCCCAGGGGGTCGACGACATTTGTTTTTGTCACTTGGCTCCTACAGCTATCACGGGTGAGTGTGATTGACAGAATTTTTTGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGGGTTTGTATCGTACCTATGAGGGATTGAAACTATTTTGAAACGGAAGAGCGTAAACGCTATATTCCGTTTTTATCGTACCTATGAGGGGCGAAATAAGATATATATTACGTAAAAAATCACTTTAATCAACTATGTAGAAACTTACAAGTACCTGGAGGAAAAGTATGCACATCA # Right flank : TACATGTCCAAAAAAGCCTGCAATCTCAAGGATCGCAGGCTTTTTTGTTTTAAAAAAACGAAACGGTGTTGCTTGAAAAAGGGGAACTGTTGTTGTTTTTTTAAAAAAGCGTCAGTTGTGTGGATGTGAGTTTCTTTTCTTGCACTGTTGGTTCCCCGAGAAGCAGTTGCATTTTTGCATATTGCTTTTCCGTTACGACCATTGCCCTTATGGATCCTTGAGGTGGTAGATTCTGCTTCAATCTCGCCAAATGTTTGTCTGTTGCTTCATGTCCATGGCAAACACGGCTGTAAACCGAAAATTGCAACATATCATATCCTTCGCTTAGTAGGAATGTACGAAATCGCCGGTATTCGCGCTTCTCCCGTTTGGTCACAACGGGTAGGTCAAAAAAGACGAGCAATCTCATAAATTTACTCATAAACATGCAATTGCAACGGAAGAAGTTCCGGCAATTTCAAAAGCGAAGGATCTTGGCTTCGGCTTGCAGTGACGAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 393185-394212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020030.1 Geobacillus thermodenitrificans strain T12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 393185 30 100.0 35 .............................. TTTCATTTCCACTTTTAACCATTCACAAAGTTCGA 393250 30 100.0 37 .............................. AACACCGCGGGAACAGGGACTTTACGAATTGGTTTCC 393317 30 100.0 37 .............................. TTACAATTTAAGGAGTGAATCTAATGAATAAATTTGA 393384 30 100.0 35 .............................. GTGTGTATGTAGCTTTTACGTCTGTATGTTGCTCT 393449 30 100.0 37 .............................. AAGAAGTTTATAAAAAAGAAATTGATACTAATCATAA 393516 30 100.0 38 .............................. TACCCATCCACAAGTCATCATTCATGCGGATAGGCAGG 393584 30 100.0 38 .............................. AGATAATGTCCGAACGAGATATACCGGTCGTACTCCAT 393652 30 100.0 36 .............................. TCATGTTCCCGGACGTTGACTTTTTCATATTCAAAC 393718 30 100.0 38 .............................. GATGTCATTCAAAAACCGCTAGAACTTTTCTATGAACA 393786 30 100.0 36 .............................. CACCGTTTTTTTCTACCTTCGTCGCGATCTGATTTG 393852 30 100.0 37 .............................. AAGTATCTGATATAAATTTTTGTTGTTTTTGGGTCAA 393919 30 100.0 36 .............................. GCGGTGCAAATGGACGGCTTTTCATAGATACTGGCG 393985 30 100.0 36 .............................. TGTAAGTGGGCAAAGAACCGCCGAATGGATCCGAAC 394051 30 100.0 35 .............................. TCCCTTCATCACCGTATAGGAAAAGGATGCGTTGT 394116 30 96.7 37 .....................A........ ATCCGAGCCACACGAATTTCGATGTTATGGCCGGCTT 394183 30 93.3 0 ....T............A............ | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.4 37 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : GAATTTACACAATAATTTGGACTTGACCCAGCGGCGGTTGTTCGGACTGTTCGAGACGTATTTGTGATTATTTGAGGAAGAGGAGCGCCAATTACGAAACGAGGTGAACCAATGGAGACGAAGGAAGCGAAACAAGGAATGGAGTGGATCATCTCCGTACGAGCGGCAAGGAATCGAGAAAGAAAAGGTGGACACCGCGAAACGGATGGTGGCGAAATGATGCGACGTGACGGTGATGGGTGAGCTGCTCGGATTGCTGATGGAAGTAGTGGAAAACAGCAAAAGGAAAAGGCTCATGTGAGGGCTCGAGAAAGCAAGAAGCGAACTTCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGGTCGACGACACTTATTTTTGTTGCTGATTCCCTACAGCCATCATGGACGAACATGATTGACGGAATTTTTCGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGG # Right flank : CGATACTGTAAGAGTATACAGTTTATCGCCATGCCTTGATTGACGAAGTGGTGGCGGAAATCCGTCGGCTAAACGAAGAAAACTTCCGCGTACGCCAACATATCCCATATGTACACAAGTTCCAAAACCGGGAAGCATGGAACTGTTTAACGGCGATGGATGTCAATGAAATCAAAGAACATCTTGCACCGCTCATTGTTCCGCTCAACGATGATGAACTGGCCAAGCGCTTTGATTTGCTGATGTATACAGTTGAGTTGGCGAAGTTGCAAACAAAAAATGCGACGAAGCCAATTCGGAGCATGATTCGCACCACAGAAGCGTTATCTAAGCTCGGATCGATTCCGCAAGTGCAGGAACAAAAATACATCGTTGAAAAGGTGTAGACGGAAGAGTTTTGGAGCGAAGCCGATAGTTTTGAATTGGAAGCTGTTCGCGAAGCGTTGCGTGACTTAGTCAAATTCCTTGAAAAAGAAACACAAAAATTTTACTATACGAAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //