Array 1 6718-1580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAE01000229.1 Fusobacterium necrophorum BFTR-1 contig0232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6717 30 100.0 37 .............................. AAAAAAGAAGAAAGAATAAAGGAAAAAGTCCAAGAGA 6650 30 100.0 36 .............................. TTGTAAGCACAAGAAACTCCTGTGGTATCTACAGGG 6584 30 100.0 36 .............................. AAATATACATAGCATAAACGAATACAATAAATTTAA 6518 30 100.0 36 .............................. GAAATTAAATCATATGGATCCACAGCGACTAGCGAA 6452 30 100.0 37 .............................. ACATTTCTGTTAGAATTTCTTCTTTTAGTAAATTTTC 6385 30 100.0 37 .............................. ATACATACCGGACCTACAATTACTTGCTTGTTTTCAT 6318 30 100.0 36 .............................. TATCTTATATGACAAAGATGATTGATGAAGAACAAA 6252 30 100.0 36 .............................. GCATGTGATCCAATTGCATATTTAAAGAAAAAACAA 6186 30 100.0 36 .............................. GATAGAACGGCATCAAGCAAAAATGAAGAGAATTAC 6120 30 100.0 37 .............................. CTGCATGATTCACTTCTGTAATAACAGCGGGTAAGGA 6053 30 100.0 36 .............................. TACATAATAGGAAGTTGTGAGAATGGTTTTGAAGAT 5987 30 100.0 35 .............................. AAATTAGATAGAAATTGTGAGTTAGTGTTTAATGA 5922 30 100.0 36 .............................. GTACTGATACGGCTTGCACTTTCTAAGCCATCAAAC 5856 30 100.0 35 .............................. AAAGCAGTTACGACAGGAACATCGCTCCCTACATA 5791 30 100.0 36 .............................. TCAAGTCATCGTTGTAATCAGATTTTCCAAAGATAT 5725 30 100.0 36 .............................. ATGAAATACGAAGAATTTTATCAGAATATTACGATA 5659 30 100.0 37 .............................. ATTAGCAAAAACTATTTTGAAAAAATATTAAAATATT 5592 30 100.0 37 .............................. GAGAGAACTCCTAACATCGCAAGAGAGTTTCAACTAG 5525 30 100.0 35 .............................. GGACAAAGCTTCAGTAAAGTGATAGAAGAAGCTTT 5460 30 100.0 36 .............................. AGTTGCTAAAAGACTACATCCAAGCACCGCCAGCAG 5394 30 100.0 36 .............................. TAATATCATCAAATTTCTTTGTGACATCGCCAACAG 5328 30 100.0 36 .............................. ACACCTGTCTTATATAGCGAATTTACGAGAGAATTA 5262 30 100.0 36 .............................. GAAAAAGACTTTGAAGATTTTCTGAAATTCAAATTT 5196 30 100.0 36 .............................. CTACTCAAATTGTTGAGAATCCCCTCTTTAATTGTC 5130 30 100.0 37 .............................. GATAATCCGGATGATATCGAAACTATATTTTTTAAAA 5063 30 100.0 38 .............................. GAAATTCCAAAATTCTTGAATTATCATAGAAGATATTT 4995 30 100.0 37 .............................. TTTAGATCAAGCCTTTCCTCTCGACTAAATTTTAAAA 4928 30 100.0 38 .............................. GTAATCCCATTAACCATTTGGTTTCTTGTTTTTTGGGA 4860 30 100.0 36 .............................. TTTACATGTGCAATCAACCATTCTTTCTGTTCTTTT 4794 30 100.0 35 .............................. ATGTTGCTCTGCTGTGTGTGGTATAAATTCTTTCA 4729 30 100.0 36 .............................. AAATATCTCTCTTACTATGATCGCCTTTTCTTCATC 4663 30 100.0 37 .............................. AAGTAACATGTTCTTGTGGGAAAAAAACAATGATTAG 4596 30 100.0 37 .............................. AATAGATCAACTATATTCCAGTTTTTTCTGCTTGAAT 4529 30 100.0 35 .............................. GTAATACCATTCCAAATTTTTGAATTAGTTTTTTG 4464 30 100.0 36 .............................. ATAAAGCTTGCTAACTTCCTTGCAATAGGTTCATAT 4398 30 100.0 38 .............................. TTGTTGCAACATCGTGCTTAGGGACTAAGATTGTACAA 4330 30 100.0 35 .............................. GTCCTTTAGAGCATAATGGGCTACAAGCCCGACAA 4265 30 100.0 36 .............................. ACTGCAATCCCAAACTATAAACAAATTAAGAACTTT 4199 30 100.0 35 .............................. CTCTACGTTAAATCTATATTTCATTTTCTCACTCT 4134 30 100.0 35 .............................. TCTTTCGAAGAATAGCTATCTCTAATTTTTCGAAA 4069 30 100.0 37 .............................. CGGACACATCGGCAGCTAATGGGAATATCACTCGAAG 4002 30 100.0 35 .............................. GTAGCAATTCTGGCAATGAATTTTTTTCGATTTGC 3937 30 100.0 36 .............................. TTTCAAGAAAAAGAACGCCAGTTGAAAGAGTTAAAA 3871 30 100.0 36 .............................. CTGGTGCTCGTCCGTTTAGCTTAAAAACAATCGCTT 3805 30 100.0 35 .............................. TAGTACTGTTCATTTCTTCCAAAGCCATGACAATA 3740 30 100.0 38 .............................. ATGGATAAAGAATTTTCGGAAGCAGTCAAATTATTGTT 3672 30 100.0 37 .............................. TGTTTTCATTCTCACAAGTATATCCAATTGGCTCTCC 3605 30 100.0 38 .............................. GTATCTACTGGCGTCGCTTTCTTTACGTCTGCCTTTGT 3537 30 100.0 35 .............................. AGAAAAATGTCTATCAGAATGAAACAATAAATTTT 3472 30 100.0 37 .............................. AATGGAAGGACGATTTTATTAGAGAACATGCAAGGAA 3405 30 100.0 37 .............................. AAGAAAAAAGAGGGTATTCTCAGATAAAAAAAGATAT 3338 30 100.0 35 .............................. CTAAACCTCGCCCATGCACCGGCTTTCTTAGATTT 3273 30 100.0 38 .............................. GCAGAATAAGGAGAAAAAGATGAATGAAAATTTATTGT 3205 30 100.0 36 .............................. GCTTCATCAATAACGAATAACTTTTCGTCTGCGTAT 3139 30 100.0 38 .............................. CCATTATCTGTCTTTAACGATGGTGCATTTATTCGGAT 3071 30 100.0 36 .............................. TGTTTTTTAAAAAGTATCAAAAACAGCATTTACAAT 3005 30 100.0 37 .............................. GCTTTAAAAATCTACATTGATGAGCTAATGTCGAAAA 2938 30 100.0 37 .............................. AGTATGTCGTTTCTGCTGAATAATTCTTTGTGTGTGT 2871 30 100.0 36 .............................. AGAGCTGATAAATTATCTGTAATCATATCTGATGTT 2805 30 100.0 36 .............................. TATCTAACACGGCACAAAAAAAAGCAGCAGGGTCGT 2739 30 100.0 35 .............................. CTCTCTCATGTTGCCGTTTTTCCCAATATCCTTTA 2674 30 100.0 36 .............................. CGAATTGATGACCTTCACTCGGGATAAACGCCGTCC 2608 30 100.0 37 .............................. CTCTGAGAATGATTGTAAACATCATGAAGTATCCGCA 2541 30 100.0 36 .............................. CGACTAATCGTCTGTCAATCTTTACTCCAAAAGCAT 2475 30 100.0 37 .............................. AAAAAACAATATTATTTCAAAAACCCGAAAGGCTCAA 2408 30 100.0 37 .............................. TTCAAATAGCTCATTATGTCTATGCTTAACTTTCTAA 2341 30 100.0 37 .............................. ATTTGATAGATGTTTCGGAATATACAAAAGACAGCTA 2274 30 100.0 38 .............................. ATGTTGTGAAATACAAAGATTTAGAGCTTTCTTTAAAA 2206 30 100.0 36 .............................. CCTCTTGGCTATGATTTAGATGAAAATCGAAGGTAT 2140 30 100.0 35 .............................. ATTTTCATAAATAGCTTCTTTCAGTGCTAGAAACA 2075 30 100.0 38 .............................. AATGCTCCCTTAGCCGCTGCAATTTTCCCCTCATCTGT 2007 30 100.0 37 .............................. TTTTTCGCTCCCCAAGCCGCAATATCATATTCTTTTA 1940 30 100.0 35 .............................. TGCTAAAGAGTTAAAGAAAGGAATGGAACAAGCAA 1875 30 100.0 36 .............................. GTAGCTTGTACTGCTTTATCAGAAACTTGTATGAGT 1809 30 100.0 35 .............................. TATGACAGTAAAAACATATCGTCTATCCTGTCCGG 1744 30 100.0 37 .............................. AGATAGTCAATAAACAGTGTTTCTAAACGTTCTACAC 1677 30 100.0 38 .............................. AAAGGTCGGTATATAGTAGGGTATCAAGATGGAGAAAT 1609 30 93.3 0 ......................G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 78 30 99.9 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAATTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTTGT # Right flank : GTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAATTTCAAAAAAGTATATTTTTATGAATTATCGTGATATAATTGAAATAAAAATTGGAGAAGAGAAAGGAGGTTTTTGTGAATACGAAAGAAGATTTTAATAAAAGCAGAGCAGCTCAAGAATTGTGGTTAAGTAAAAAAAATTGGAAAGAAAAAATAGAACATATAAAAATTCCTAGTTATTTAAAAGATGACTTAGAAGAATATTTCAAATATATAAAAGAAGGGAATAATATTATGTATTCAGCAGTAATCGATAATGTGATTGCAAGTATAAATGTTGCAGAACAAGAAAAGGATTTGACTTCTGAAGAAGCTAAATATATTAGAAAAATATTATAGGAGTATATTATGATTCAATTTAATGAATGCGAGAAAAACTTATTTCGAGGATATGATGGAGCAAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10167-11119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAE01000237.1 Fusobacterium necrophorum BFTR-1 contig0241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10167 30 100.0 36 .............................. ACAGCCCTTTGGCTAACATATTAGCCACACCAACGG 10233 30 100.0 35 .............................. TTCGTTGCTTTTCTTTCTAATAGCAATAGAGATAG 10298 30 100.0 35 .............................. GAATGAATTGATTATTACTGTTTATCCGGAATCTC 10363 30 100.0 36 .............................. GAAATTCCAAATACAACGAAATATGGAGAAGCAATT 10429 30 100.0 37 .............................. GGTAAATCAGAATTAATTCCTGTTAACATAATTCCAG 10496 30 100.0 38 .............................. GAGAAAGTTTTCAATTCCTATTGAAGAAAGAAGTTTCC 10564 30 100.0 37 .............................. ACTTATACAAGGCAGAAGAACTTTTATCTAAGACACA 10631 30 100.0 36 .............................. TGATACTATTATAGCACTTATAACAGGGACATACAA 10697 30 100.0 35 .............................. CTATTTTTGATTTACAAGAAAAATTAGATTTGATA 10762 30 100.0 35 .............................. GCATAATAATACTTCACCATTATGCACTTTACCAG 10827 30 100.0 36 .............................. TGAGACAACTGGCATACAAAGTAAATATGTCACATA 10893 30 100.0 37 .............................. GAAGAAATTTTGGAAAGTGATTTAAGGGTATCTATCA 10960 30 100.0 35 .............................. CTATTTTTGATTTACAAGAAAAATTAGATTTGATA 11025 30 100.0 35 .............................. TATCTCAAAATGTCGGAATATGATTATTGGAATGA 11090 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTCCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTTCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TTTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGAACTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAACTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGGATTCATCTAATTTTTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATTTTTGAAAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 10098-11118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAE01000253.1 Fusobacterium necrophorum BFTR-1 contig0257, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10098 30 100.0 36 .............................. GATAATCGTCTTCTCTCCATCATCAAAGACTTGCTC 10164 30 100.0 37 .............................. GTTCTTTCTTTTCTATTTGAGCTTGGCGAAACTTTGA 10231 30 100.0 36 .............................. ATGTAAAGATGTAAGTGGAAATATTAAAAATGTAAA 10297 30 100.0 37 .............................. CTCTTTGAATAAGTTAGCTTCTACAATATGCCCCATA 10364 30 100.0 36 .............................. TTCCCCTGTCACCAATTGTTTTTCTTTTTTCAAAAT 10430 30 100.0 37 .............................. GGAAGAAGCTAGACGAAAAGCAGAAGAAGAAGCGAAA 10497 30 100.0 35 .............................. CTTATCTCCGGAGGAATTTCAAACAATTCGAATAG 10562 30 100.0 37 .............................. ATTCTTGACATTTGATAGAAATGTCAAGAACACTTTG 10629 30 100.0 35 .............................. TCTGAAACACTTCTTGCCTCCGCTGCTTTTCCCAG 10694 30 100.0 36 .............................. TGCTGAGTGAAGTAAGAGGGATGCTTACTTATCCAT 10760 30 100.0 37 .............................. GATCTGATCGGTGGGGAGAAGCGAGATTCTATATAAA 10827 30 100.0 36 .............................. TTCTACATCTAATTCTTCATATATTTCAGGAGCCTC 10893 30 100.0 35 .............................. GGTAATGGGATCTACAGTAGAACGATCCAATCCTC 10958 30 100.0 35 .............................. TAATTTCGAACTTCTTTTCTTTCTTTTTCCTGCAT 11023 30 100.0 36 .............................. GATTTTCGTCCATTAAGTTAAGAATAGCATATATTA 11089 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 100.0 36 ATTTACATTTCACTCTGTTTCTATTATAAG # Left flank : GCATATAGATTCCCTGATCGGTAAAAGCATGAGGATTGTACTTAATATTACTACCTCTTCCTGCACTCTTGTTCAAGGTCACATTTTGTGACCTTGAAAGTTTAGAGACTTCCTCGTCAGTTAATCGGAACATAAAATCTTCATCAAATTTTTCAATATTCCTTTTTACTTGCTGATTAAAAGCCTTTGTTTCATATCCATAGATTTCGGCTAATTCAAAGTCAAGCATGACCTTTTGTCCCCTAATAATATAAATCTTTTTCTCAAGGGATTCCTGACTTACAATCATCATTTCATCTTTTTTATCCATTTCTTTATTCTCTTATTCAAAGTTCCAAATAGTTCATTTCATAGACTATATTGTATCCTAAATGTAATATCATTCATCATAAAAACCTTTGAAAAATTAAAAACCTTATAAGTATCCCTATCAAACCACAAGACCACTCTGTTTCTATTATAAGCTTTAATCGCAAGAACGATTGATGTTGTGATTACTA # Right flank : GCCGCATAAGATAAAGTCTTTTATTTTAGCTGATTTTCACTCCCAAATTTGTCGACCTCTTGTAATTGTATCATTTTTTATTGATTTCAACAAATAAAAAATGTCAAAAATCATCTCTAGTCCTTTATTAGAAGTAGTTTGTCGACCTCTTAGGAAATTTACATTATTGGGGGTCGACAAGCAAAAAAATACCCTCATATTATTTCATTTCAATATACTTTTTTATCCTTAACTCTTAAAAATGTTTTTAATGTTTTTCTTTTGGTGATAACTTAAAACATTTCTAGATGCATACAAAGCCTATTACAAATGAAACTCCTTTATTTTTTGATAAGAATTTATTGTTATCTTTTTCTCTATTTTCACTCCTTTAAGTAAGGTAAGACTCTACAGTCAAAGTATATTTCATCAACTCTTCATGCTGACGAATTTTTTCCTCTTTTGAAATACTTTCTTCTCCCCTACCGTTTCCGGTCTGATATGTAAAATCAATTGCACTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACTCTGTTTCTATTATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1171-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAE01000068.1 Fusobacterium necrophorum BFTR-1 contig0068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1170 30 100.0 36 .............................. ATTGGGAATTCCGATAGCAGGAGCTGCTTTCATCTT 1104 30 100.0 36 .............................. AAAAGATGGAGAGCGAAATATGGAGAAAGATATTAC 1038 30 100.0 36 .............................. TAAATTCATATTCATCTTGTCTTGTAAAAATAATTC 972 30 100.0 37 .............................. CACAAAGCCAGAATGAAAATTCGATAAAGTTTTACGA 905 30 100.0 37 .............................. GTGTTTGAAGATACAAAATTCTCCGAAAATCCGATAA 838 30 100.0 37 .............................. ATACGGCTTATAGGTTCGAATCCTATACTCTCCGCCA 771 30 100.0 36 .............................. TTCTATAATCATCAAAGTATTTACTACCACTAGTAA 705 30 100.0 36 .............................. GTGTATTGCATTAAGATAACTTGTTCATTTCCGTCT 639 30 100.0 36 .............................. TCTTCTTTGATGTCATCTATAAACACAACTCCCTTC 573 30 100.0 36 .............................. TTTTCAATGTTAAACCTCTGCACGTTCCGTGCGGAA 507 30 100.0 35 .............................. GTTCATAGAAATGTCAAACCAAAAATCGCATATCA 442 30 100.0 36 .............................. ACCTGCGTCTATATTTTCAAAAAGCCATTCATTGAA 376 30 100.0 37 .............................. CTTGTGCACTAGATGTAGCAAGTAAAGGGTTTAATCC 309 30 100.0 36 .............................. AACAAAAAAGCGAGGAGAGAAGCGGAGAGAGCAAGG 243 30 100.0 36 .............................. TTTCAAGTAGAAACTATTATTACTGATATTGATGAA 177 30 100.0 36 .............................. ACTTCTGTACCTTTCAAAGGTGTAGCAAACAACATC 111 30 100.0 37 .............................. ATAACAACTTTCCTCAAACCGTACTTCTCCAACAATG 44 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 100.0 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : TGAGAAATTTAGATACTGTGAAGAAAAATTATTGAATATTTCATTTTATAATCATCAAGATAAAAAGAAAGAGGAAGGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATGATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTATTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAATAGAAAGGCTTAATATTTATGCTTTTTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAATACTA # Right flank : CATAACAACTTTCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //