Array 1 53631-52612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGY010000012.1 Fusobacterium necrophorum strain DD16 JD29_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 53630 30 100.0 35 .............................. TTCGTTGCTTTTCTTTCTAATAGCAATAGAGATAG 53565 30 100.0 35 .............................. GAATGAATTGATTATTACTGTTTATCCGGAATCTC 53500 30 100.0 36 .............................. GAAATTCCAAATACAACGAAATATGGAGAAGCAATT 53434 30 100.0 37 .............................. GGTAAATCAGAATTAATTCCTGTTAACATAATTCCAG 53367 30 100.0 38 .............................. GAGAAAGTTTTCAATTCCTATTGAAGAAAGAAGTTTCC 53299 30 100.0 37 .............................. ACTTATACAAGGCAGAAGAACTTTTATCTAAGACACA 53232 30 100.0 36 .............................. TGATACTATTATAGCACTTATAACAGGGACATACAA 53166 30 100.0 35 .............................. CTATTTTTGATTTACAAGAAAAATTAGATTTGATA 53101 30 100.0 35 .............................. GCATAATAATACTTCACCATTATGCACTTTACCAG 53036 30 100.0 36 .............................. TGAGACAACTGGCATACAAAGTAAATATGTCACATA 52970 30 100.0 37 .............................. GAAGAAATTTTGGAAAGTGATTTAAGGGTATCTATCA 52903 30 100.0 35 .............................. CTATTTTTGATTTACAAGAAAAATTAGATTTGATA 52838 30 100.0 35 .............................. TATCTCAAAATGTCGGAATATGATTATTGGAATGA 52773 30 100.0 37 .............................. CATTCTAAAGTAAATAACACTTTTACCCATTCTTTGT 52706 30 100.0 35 .............................. TATCTCAAAATGTCGGAATATGATTATTGGAATGA 52641 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTCCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTTCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGAACTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAACTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGGATTCATCTAATTTTTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATTTTTGAAAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 22764-23921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGY010000017.1 Fusobacterium necrophorum strain DD16 JD29_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 22764 30 100.0 36 .............................. AAAAGATGGAGAGCGAAATATGGAGAAAGATATTAC 22830 30 100.0 36 .............................. TAAATTCATATTCATCTTGTCTTGTAAAAATAATTC 22896 30 100.0 37 .............................. CACAAAGCCAGAATGAAAATTCGATAAAGTTTTACGA 22963 30 100.0 37 .............................. GTGTTTGAAGATACAAAATTCTCCGAAAATCCGATAA 23030 30 100.0 37 .............................. ATACGGCTTATAGGTTCGAATCCTATACTCTCCGCCA 23097 30 100.0 36 .............................. TTCTATAATCATCAAAGTATTTACTACCACTAGTAA 23163 30 100.0 36 .............................. GTGTATTGCATTAAGATAACTTGTTCATTTCCGTCT 23229 30 100.0 36 .............................. TCTTCTTTGATGTCATCTATAAACACAACTCCCTTC 23295 30 100.0 36 .............................. TTTTCAATGTTAAACCTCTGCACGTTCCGTGCGGAA 23361 30 100.0 35 .............................. GTTCATAGAAATGTCAAACCAAAAATCGCATATCA 23426 30 100.0 36 .............................. ACCTGCGTCTATATTTTCAAAAAGCCATTCATTGAA 23492 30 100.0 37 .............................. CTTGTGCACTAGATGTAGCAAGTAAAGGGTTTAATCC 23559 30 100.0 36 .............................. AACAAAAAAGCGAGGAGAGAAGCGGAGAGAGCAAGG 23625 30 100.0 37 .............................. ATAACAACTTTCCTCAAACCGTACTTCTCCAACAATG 23692 30 100.0 38 .............................. ACTTTTTTCATCATATCTCGTCGCAAATTTCATATACC 23760 30 100.0 36 .............................. TTTTAATTGCAGCTTTTTTTCATTTATTTCTAATTC 23826 30 100.0 36 .............................. GAAGCCCTGCTTGATAACGATGTTGAGTATTTGTCA 23892 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.8 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : TGAGAAATTTAGATACTGTGAAGAAAAATTATTGAATATTTCATTTTATAATCATCAAGATAAAAAGAAAGAGGAAGGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATGATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTATTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAATAGAAAGGCTTAATATTTATGCTTTTTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAATACTA # Right flank : ATTGAAAATTTTAAAAGAAATAAGGTCTTCTTCAATTAGACTAAATCCCATTTTAATTGTGTTATTCAGATATTTTACTTAGCATTTTTTCGCTATTTTAGCACTTGTTTTTTTATTTTCTAAACTTATAAATCTTCATGCTTTTTTCTTGTATTAAGAATAATGAGAGAATAAGAAGAATTTATTTAGAAGAAGTTTTTCTGGAATACATTTAAAAAATATATTATAGAAAGGATTAAATGGAAGATTTAAAATTAAAGAATATAGAAATAAAAAAGGAGTTGATGTAATTGAATAAAAAGAAGTTCCTAAGTAATGTAATAAAAAGCTTAAATAAACAACCTGTTTTATTTGTCGGGTCAGGAATTCCAAAAAGATATTTTAACTTAGAAAATTGGGAAGAACTTTTGAAAAAATTCATAGCAGAATTTTCTAAGGATGAATTTAAATATACTAAGTATTTATCAAAAGTAAAAGAGAAAGATTATTATGGAAAACAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1142-2955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGY010000043.1 Fusobacterium necrophorum strain DD16 JD29_42, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1142 30 100.0 38 .............................. ACTGAACGAGGATTTTTCTTTTAATATTTTCTTTTATA 1210 30 100.0 36 .............................. TATAAAATAGGGAGATAGTAATGAAATGGTTAGTAA 1276 30 100.0 38 .............................. TTTTATTCCTCCTTCATTGTCGATATTAATATGTATTA 1344 30 100.0 37 .............................. CATACTCATCTCCGGATACTTTTTTTCCAAATATTAG 1411 30 100.0 35 .............................. CAAAATCCTTTGAAATTTAAGGAGGTAAGATGAAA 1476 30 100.0 35 .............................. AAAAATCCTATCGCTTTTTATCATTTAGGAAATAC 1541 30 100.0 36 .............................. AAAACATTTGAAGATATTTTAGAATTACAAAAAATA 1607 30 100.0 35 .............................. GGAGCATTTGAATGATGATCCTGAAAGCAAAATCT 1672 30 100.0 37 .............................. TAAATTCAACAGCTTGTTTTTTATCAGCTTCATCATC 1739 30 100.0 36 .............................. AAACATAAGTCAATAACTTTTATAACTGTAGTTTTT 1805 30 100.0 37 .............................. GAAAACAATCCTAAAAAAATTACTTTGGAAGATTTTA 1872 30 100.0 36 .............................. CTTTTTTAAGCGGCTTAGGTTTATCATTTTTTCTTA 1938 30 100.0 36 .............................. TTAGAATTACTTGAAGTTTGTGAAGTAAAACTATTA 2004 30 100.0 35 .............................. TCATATGCCCCTTTTGCTGCTTCTTTTACTCCTCT 2069 30 100.0 36 .............................. TGATTATTCTTTATTAGTAAAAACATTAAAACAAGA 2135 30 100.0 37 .............................. AATTTAAAAGATTTTTTCTAAAAGCTTCTTTTTTCTT 2202 30 100.0 36 .............................. GCGTGAATAATTCTAGAAATGTCTTTTTCTTTTAAA 2268 30 100.0 36 .............................. TAACCGGAAAACTTCTCCACAAGCAGAAAATTATGA 2334 30 100.0 37 .............................. CCAAATGGAATTGTGGATCTTGATTATGCATTAGTAG 2401 30 100.0 36 .............................. GGTAGAACTATCACAAGAAAAAAATGGAAAATCATT 2467 30 100.0 36 .............................. AATGTGAAAGCAAATTTAGTTTCTAAGATTGAACAA 2533 30 100.0 37 .............................. AATCGATAGTTTTTCTTCGGAGGATATTTATAGTAAA 2600 30 100.0 35 .............................. AAAAGAAACAAAGAAAGGAGGGAGTATGGAGTTAA 2665 30 100.0 36 .............................. AGGAGCGAATACAGAAGGGGGAGACTGCTACATTTT 2731 30 100.0 35 .............................. ACGGTTCAAAATAGAAAGGAATCTATACAAAATTT 2796 30 100.0 35 .............................. GTTTTCTGCTAGATACATATTGTATCTAGTTGCTC 2861 30 100.0 35 .............................. ACCAGTCAGGCTAATGTACTGGCCAAGCCATTCCA 2926 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 100.0 36 CTTATAATAGAAACAGAGTGAAATGTAAAT # Left flank : CAAGTGCAATTGATTTTACATATCAGACCGGAAACGGTAGGGGAGAAGAAAGTATTTCAAAAGAGGAAAAAATTCGTCAGCATGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTACCTTACTTAAAGGAGTGAAAATAGAGAAAAAGATAACAATAAATTCTTATCAAAAAATAAAGGAGTTTCATTTGTAATAGGCTTTGTATGCATCTAGAAATGTTTTAAGTTATCACCAAAAGAAAAACATTAAAAACATTTTTAAGAGTTAAGGATAAAAAAGTATATTGAAATGAAATAATATGAGGGTATTTTTTTGCTTGTCGACCCCCAATAATGTAAATTTCCTAAGAGGTCGACAAACTACTTCTAATAAAGGACTAGAGATGATTTTTGACATTTTTTATTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTCGACAAATTTGGGAGTGAAAATCAGCTAAAATAAAAGACTTTATCTTATGCGG # Right flank : TATTTTTAGTATTGAGAAGTATTGTCAGAATCAGAAAAACTTATAATAGAAACAGAGTGGTCTTGTGGTTTGATAGGGATACTTATAAGGTTTTTAATTTTTCAAAAGTTTTATGATGAATGATATTACATTTAGGATACAATATAGTCTATGAAATGAACTGTTTGGAACTTTGAATAAGAGGATAAAGAAATGGATAAAAAAGATGAAATGATGATTGTAAGCCAGGAATCCCTTGAGAAAAAGATTTATATTATTAGGGGACAAAAGGTCATGCTTGACTTTGAATTAGCCGAAATCTATGGATATGAAACAAAGGCTTTTAATCAGCAAGTAAAAAGGAATATTGAAAAATTTGATGAAGATTTTATGTTCCGATTAACTGACGAGGAAGTCTCTAAACTTTCAAGGTCACAAAATGTGACCTTGAACAAGAGTGCAGGAAGAGGTAGTAATATTAAGTACAATCCTCATGCTTTTACCGATCAGGGAATCTATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGAGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //