Array 1 1779782-1779326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016328.1 Gluconobacter oxydans strain 1.637 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1779781 29 100.0 32 ............................. CACTTCCACGGCAGCAACCTGCGCAACCTCTT 1779720 29 100.0 32 ............................. CGGACGGGCTACACTGAGGGCGTTGGTCAGCC 1779659 29 100.0 32 ............................. CCGTATCGCTACGGTACAGGTTTCCGTCCTTG 1779598 29 100.0 32 ............................. GATAGAAGACGTGACAACATTACGCGATAGCA 1779537 29 100.0 32 ............................. ACAGGATCTGGCACTATTTACTTGTCCCCACT 1779476 29 100.0 32 ............................. TGCTCACCCACCACACAGCCCATCGTGGGCTC 1779415 29 100.0 32 ............................. GGCGGCCCGAACGTGTTCACCACGTCCTGGAT 1779354 29 89.7 0 .......................A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCCTCGTCCCCATGATCGAAGATGTTCTCTCCGCAGGAGGCCTGTCACCCCCTGGAGCACCGGAAGAGGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAACGCTCCACCGCGACTACGAGGGCGGCTCGCCGTCTGGCTGCTGGAGATCCGCGCAGGCGTATATGTCGGTACCTATGGCCGAAAAGTACGCGAGATGATCTGGCAGCAGGTCTGCGCCTATATTGAACAGGGAAACGCTGTCATCGCATGGGCTGCTCCCAATGACGCAGGCTTCGAGTTCGACACCTGCGGCGCCAACAGACGATGCCCCGTGGACCTTGACGGATTTCGTCTGGTCGAGTTCGGTCCAGAAGCTGCCCTCCCCCTCCTGCCCGGCCCCCTCAATTCACCACGAAACCGACGCTGAAAAATCGGTAGCTTTTTGAAGTGGAAGATTTGCACCCATAATCATATACTTACAAACAAGG # Right flank : TTACCGTCAGGCTTCTGAGCCCTGCACAACCGCACTCATTCTCCCCACATTCTTGCACACAAGGAGACAGATCATGAGCAAGCTCAGTAAAGAGGAACGGGACAGCCTGCGTGACAGTGAATTCGGGCTTCCTGAAAAACGGGCCTATCCCGTCGATACAAAGGCCAGGGCCCGGAATGCGAAAGCGCGTGCCACGCAGGAGCTGGAACGGGGGCTGCTGACACCGGAAGAACGGGATGAGATTGACCGGGCAGCAGATCGTAAACTGAACGAAGACTAAGCCAGAATCAGAAACGGCCCCGGATCACTCCGAGGCCGTTTCATCATTCAATTCAGCACTCAGTGAGCCTGCGCTGCCCGCAATGGAGCATCTGCCGGAACATCCTTCAGCGGAATACCCTGATACTTACCCGTCAGCGTCTTCAGGAACGCCACGATATCTGCAACATCCTGGTCAGTAATATCATGATCCGGCGTTTCGTAACGGGCCATGGCACGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1854441-1853637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016328.1 Gluconobacter oxydans strain 1.637 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1854440 29 96.6 32 ............................A ACGTCACAGGCGCTTTTATGACCGGGCAGATC 1854379 29 100.0 32 ............................. GCGCCTGACAGAATTGCCAGGCTGATGAAGGT 1854318 29 100.0 32 ............................. TCGTTGTCCGGCGACATTCCCAACCTGCTTAT 1854257 29 100.0 32 ............................. ATTATGGGCAAAAACGAAACCCCGCAAAACGT 1854196 29 100.0 32 ............................. AACCGGGCACGCATACTGCGGGTTTGCCCGTA 1854135 29 100.0 32 ............................. AACCAGCGTGACGTTAGCGGCGTGGCTCTCGG 1854074 29 100.0 32 ............................. GTGCTGTTTTGGACTTTTTCGGGCCCGGTCAA 1854013 29 100.0 32 ............................. CCATTTGCGCGGCCGTCACCAAATCCCGTGAA 1853952 29 100.0 32 ............................. AAGGACAGCGCAAGCGGCTTTCAACAGGTACA 1853891 29 100.0 32 ............................. GTGATTTTCCGGGTCACAGATACCTCCCATTC 1853830 29 100.0 32 ............................. ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT 1853769 29 100.0 32 ............................. GACGGCATTTTTCAGAAGCACGCGCGCATCAT 1853708 29 93.1 14 ................T........G... CGTGGGTCTCCGGC Deletion [1853666] 1853665 29 79.3 0 ...........G.AA.......C...GG. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 31 GTGTTCCCCGCATGTGCGGGGATGAACCG # Left flank : TCGGGAACTGCGCGTCCCGTTCCGGACGGCTCATCATGTCACGGGGCGTCTGGTCGGACTGGCCGAGCAGCGCGGTTGTGATCTGGCGGATCTGTCCCTTGAGGATATGCAGGCCGTGGAGCCGGGAATCAACGCTGGTATTTTTGATGTTCTGACGGTTGAATCCTCACTGGCTTCCCGCACCAGTCTGGGCGGAACTGCTCCGTCCAACGTGCGCCAGCAGGCTCAGGCCTGGCTGGAGAAACTTGGAGACGCTGCATGACACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCGCTCAGCACTGGCCTGAGCGCTTGCGGGAAGAAAGGGGCGCCACATGCACCCGGCCCCGCTTCCGACATCACCTATCCCCGGAGTTATCCGCCTGAATAACGGGCTTTCAGATAAGTCTTACAGGGGCCGAAAACAGGCCATAAAAATCGGTAGATTTTTGAGGGTGGAATTTTCCCTTTTCTGTCAGTACCTTGCCAGGAAGA # Right flank : ACTACTGGTGGCCGCAACTTCGATCTCGCCAAATAGTCCTCGCCTACTCGGGCGTGGATCTACCGCGAGAAGCGATTCCACTTTCTTCAGCCTCAGCGTTTTTCTGAAAACTCTACAGATGCAACAGCCGCCATCAGCTGTCCGCCAGAGCCTTGACTACCAGCGGGTGTGCCAGAACGTCCTTTGCAGGCCAGCCCATCGCCCTGAGCGCTCGAACCCCTTCTGCACCATCCCTTTTGGAAAGCTTCTTTCCGCTCTCATCCAGAATAAGAGCGTGATGCCTGTACTCCGGTTCAGGCCATTTCATCAGGGTCTGAATTACACGATGAATGGATGTCGCAGCGTAAAGGTCCTGCCCTCTCGTGATGCAGGTCACGCCCTGAAGGGCATCATCGTGGGTGACGCACAGATGATAAGACACGCCCGTATCTCTGCGTCCCAGAACAATATCACCAAATTCATCCGCACGCCCCGCAATCCGACCATGACCCGCTTCATAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //