Array 1 64900-62935 **** Predicted by CRISPRDetect 2.4 *** >NC_010125.1 Gluconacetobacter diazotrophicus PA1 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 64899 32 100.0 35 ................................ CTTTCTTTCCGCCACGACATCACGGTTCGTTTCCC 64832 32 100.0 34 ................................ ATTTAGGGAATGCGCTTGGAAGGACATGGATCTT 64766 32 100.0 34 ................................ CGGAACCAGACGCGCCGGCGATGCCGAACAGAAG 64700 32 100.0 34 ................................ ACAGATTTGCGCCACAGATGGGTGCCCTCCTGTT 64634 32 100.0 35 ................................ TGACGTATACACGATTGCAGCGCAAGGATCGGATT 64567 32 100.0 34 ................................ CTGGACGAAGACTATGGTCAGGACCACGACATGA 64501 32 100.0 35 ................................ TTCGAGGAAGACGACCACACCGAAGCGGTGGAATC 64434 32 100.0 33 ................................ GCCGTGTCGCTCTGCCGCTGGCGCTCACCGATC 64369 32 100.0 35 ................................ TTCGAGGAAGACGACCACACCGAAGCGGTGGAATC 64302 32 100.0 35 ................................ GAGTGAAGGGGGCGGTTATGCTTATCGAACGTGAC 64235 32 100.0 38 ................................ CGACGTAACCCGACTTGGGGGAACCGGCTCAACACGCC 64165 32 96.9 35 ....................A........... GATGCCATTCACAAGGTGTCGGAATGTGCGCTGAT 64098 32 100.0 35 ................................ AGTAGGTCGATCTCGCGCCCGATCAGCGGACCCAG 64031 32 100.0 35 ................................ CTGACTGAAATGCGGATCACCTCTGGCTGGCCGAT 63964 32 100.0 36 ................................ CACTCGCGACAGCGCGCATTCAGCACCTCGCAGAGC 63896 32 100.0 35 ................................ GTCGCCGAAACATGGGACGGTGTGAACCGGGCCGG 63829 32 100.0 34 ................................ CACGCAGCGCACTGGGCGCGCGCATTGCCGCGGG 63763 32 100.0 34 ................................ CACCTAGCCTTGACATCGCTTCCTTCGCAAGGGA 63697 32 100.0 35 ................................ CCCGACAGGCCCGCGCGCTCAAGTAATATTTCGGG 63630 32 100.0 34 ................................ GGCGTCCATGCAGACCGACCGCATGGACCGCCCA 63564 32 100.0 34 ................................ ACTCTCAAGCTCGGCCATCCGTTTCAGGATTATG 63498 32 100.0 34 ................................ CGGCGCAGCAGGATTACACGCTCGTCCCCGGCTC 63432 32 100.0 34 ................................ AGGCGTGAGACCACGTCAAGGGTCGGAGACGTTG 63366 32 100.0 35 ................................ AAGAAGGAGGGGATTGGACCGCGTATCGAGAAACG 63299 32 100.0 34 ................................ CGTTGGAGAGATTGGCCGAGATATCGGACAGTTG 63233 32 100.0 35 ................................ CCTACGACGAGTGGCTGCGGTGCGTGCGCGTGATC 63166 32 100.0 36 ................................ GGCGTGATGAATTCGCCCGTCATCATCGACGAGGCG 63098 32 100.0 34 ................................ GATGTCCTCCTGCACCATGCGGAGGATCGCACCC 63032 32 96.9 34 .........C...................... GCCGACCGCGTCGGACAGGAGTCGCAAGGTTGTC 62966 32 81.2 0 .........CAC....A....G.....A.... | ========== ====== ====== ====== ================================ ====================================== ================== 30 32 99.2 35 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Left flank : TACCCAGCATTCGTGTGGAAATAGGCGATGCTGGTGCTGATTACCTATGATGTAAACACCGAGGATGCGGCAGGCCGTAGACGGCTACGGCGCGTAGCACGCGCCTGCCTCGATTTCGGCCAGCGCGTGCAATATTCGGTGTTTGAATGCGAGGTGGACCCCGCACGCTGGACGGCCCTGCGGGCGCGCCTGATCGCAGAGACCGACACCACAAAGGACAGCCTGCGCTTCTATCAGCTTGGAGCGAAAGGAAAGCAGCGGGTGGAACATATCGGTGCAAAGCCCGTCCTGGACCTGGATGGACCGCTTCTGTTCTGATCCTGCGCGATACGAAAGCTGTTGGGCAAACCCCTGCCGATTCGCGCATCTACCATGTGGTTTCCTATCAATGTGTTATGCCCCAACGCAGATCGCTTGCCATACTCACTGCACCAATCTGGCGATGGTTCGCGGAACAGACCCATTTTCCCTTTTCTTGACAAGATGATAGTATGCGCGCC # Right flank : ACGGCAAGAATGCGCCTCGCATGCAGGGGCATAGATCGAAGCTATACAAGGACTCGGGTTCACTTCAGCGACCATCCCGAGAGAAGCTGCTGTCGGTCTACCCATCCAGCGACTGCAATTCGAACAGGCGGCGATACAGGCCGCCGTCCTGGGTGATCAGCTGGGCGTGCGATCCGTCCTCGCGCAGTTCGCCGTGGGCGAAGACGAGGATGCGGTCCAGGCCGACCACGGTGGACAGGCGGTGGGCGATGACCAGTACCGTGCGGCCGACCATCAGGCGTTCCATCGCATCCTGCACCAGGATTTCCGATTCCGAGTCCAGGCTGGACGTGGCCTCGTCGAAGATCAGGATCGGGGCGTTGGCCAGGAAGGCGCGGGCGATGGCCACACGCTGGCGTTCGCCGCCCGACAGCTTGACGCCGCGTTCGCCCACCATGGTGGCGTAGCCCTTGGGCAGGCGTTCGATGAAGCCCGCCGCGTTGGCCTGGCGGGCCGCTTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2181482-2182177 **** Predicted by CRISPRDetect 2.4 *** >NC_010125.1 Gluconacetobacter diazotrophicus PA1 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2181482 36 100.0 30 .................................... CTGGCCGGTTAATTGCGTGACGGCGGGTTC 2181548 36 100.0 30 .................................... ATCGCATGACCTTTGGTTTCGACCGGGTAT 2181614 36 100.0 30 .................................... TCGAAGACCGCGCTGGACGACATGGGGAAG 2181680 36 100.0 30 .................................... CGATTCCGATACCTTGCGCGTGCGCACTGG 2181746 36 100.0 30 .................................... GCAAGATAACGGCCTTCGGCCACACGAAGA 2181812 36 100.0 30 .................................... GCAGATTTCGATACCGGCAACGACGGTCTT 2181878 36 100.0 30 .................................... GAGCGGAGGCAGCTTGTGGCCCAATATGGC 2181944 36 100.0 30 .................................... GATCGCGCATGATGGCCGGATCAACGCTCA 2182010 36 100.0 30 .................................... ATCGAGCGCCGGCCGGACGTCGTTGTCGCC 2182076 36 100.0 30 .................................... CATGGTGTCGAGCTTGCTCGGCGCGTTCTC 2182142 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Left flank : ACCGTCCTGGCCGCAACCGAAGCGGTAGCCATGTCCGTGGTGCGCGCCATCGAGCATGGCAGTGCCGCGCTTCTCTCGACTCCAACTCTGAAAGCCCGGGATTGACGGTGCGCGATGAAAGCCGAGGACATCCGGTTCATGTGGCTTCTCGTATTTTTCGACCTTCCGGTTCGCACCAAAGAGCAGCGACGACGCGCCAGTCGCTTTCGCCATTTCCTCAAGGATGACGGCTTCTTGATGTTGCAATTTTCGGTTTACGCACGCATCTGCCGAGGACAGGACGCTGTGGAAAAGCATGTTCGGCGGGTGCGGTCGAATCTTCCAAAGGAAGGTAGCGTTCGGACACTACAAATCACGGACAGGCAATACGGACGGATGGAATTGATGCTGGGCCTTGCGCCAAAAACCGAGCGAATCGGACCTTCTCAGATGGTGCTGTTGTGATTTCGGCGTCAAAAAACGCGGAAATCACAACAGTTCCAATTACTTCCCTGCAAGGT # Right flank : CTGCTCTTAGCTGTGCCGGTGGATTTTGTGGGCACGAAGAACTCATGATTTTCATCCAATTCTTCCGGGTTTTCCACGCTGCTGGGCGGGTTCCCTCTGGCGCGGCGGGGCCGGTGTCGCTACATCGCCCTGCATGATCGACCGTGACGCCATCGCCGCCGCCATTCCCATGCCCATCCTGGTCGCGCCGCAGGCCATCCTGCGGCAGAAGGCGCGCCCCGTCCGGCCCGAGGATGCGGCGGGCGTGCGCGATGCCCTGCCGCGCATGTTCGCCGCCATGTACCAGGCCCCGGGGATCGGCCTGGCGGCCCCGCAGGTCGGGATGGGCCTGCGATTTGCCATCGTGGATTTGGGCGAGGAAGGCGAGCGCCAGCCGCTGATCCTGATCAACCCGGACGTGATCGCGGAATCGGACAGCCTGGCCTCGCGCGAGGAAGGGTGCCTGTCCCTGCCCAACCAATATGCCGAGGTGATCCGCCCCGACCGTGTCCGCGTGCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 2255117-2253747 **** Predicted by CRISPRDetect 2.4 *** >NC_010125.1 Gluconacetobacter diazotrophicus PA1 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2255116 29 100.0 32 ............................. GCCGATGATCGCCGTGACGATCGAAACGACGG 2255055 29 100.0 32 ............................. CTGTGCCTGATACTGCGCCTCGTTAGAGGCAA 2254994 29 100.0 32 ............................. CTGCGCCTGATATTGTGCTTCGTTTGACGCAA 2254933 29 100.0 32 ............................. ATCGTTCGCGGCATCACCGCCGAACGGATGGT 2254872 29 100.0 32 ............................. ACCGACGACCTTGATTCCCGCCACGCCGCGCT 2254811 29 100.0 32 ............................. GTCAGGAACGTGGACAGCACGCGCGAGAACGT 2254750 29 100.0 32 ............................. AATAATCATCTTTGAGGGAGGGAACGATTGTC 2254689 29 100.0 32 ............................. GGCCTGCTCCGCATCGAAGGTCTGAGGCAGAT 2254628 29 100.0 32 ............................. CCGCCTCGTGGAACCGCTCAGGATCGCCGCTG 2254567 29 100.0 32 ............................. GATGCACCAGAGCATGTACGCGCTCGTCCGGC 2254506 29 100.0 32 ............................. GCGATAGCAGCGCGATTGCCGAGCGACCCGCG 2254445 29 100.0 32 ............................. CAGCCGTCTGGGCGCGGGTCGAGTGCCGAGAA 2254384 29 100.0 32 ............................. TAGAGGATCAGCGCGATCGTGATCCAGTTAAG 2254323 29 100.0 32 ............................. GTCCCCGGCTGGGCGGTGCTGCGGGCTACGCC 2254262 29 100.0 32 ............................. GCCATGTCGTCCGCTAAGATGGTCCCGAGCCA 2254201 29 100.0 32 ............................. AAACGTCACATGGGGAGGGTGCCGGGTCAATG 2254140 29 100.0 32 ............................. TCCTGCATGATCGGAATCTCATAGACCCGCGT 2254079 29 100.0 32 ............................. GTTCTTGCATGGAGAGTGTCGGCTGAGAAAAG 2254018 29 100.0 32 ............................. GATATTAGGATGAGATGGGAATCCGGTGACTC 2253957 29 100.0 32 ............................. GCGTCGAACAACCTCCCCTTCACCGTCGCGGC 2253896 29 100.0 32 ............................. ATCTTGAGTTTGGGGTTGCCGAGCAGGGGGAC 2253835 28 96.6 32 ........-.................... CAGGGTCTGGTGATCCTGGACGAGGCCGCCTT 2253775 29 79.3 0 .......T....TA...A........T.T | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCACGTGCGGGGATGAACCG # Left flank : TCCTTTCGGCAGGCGGTGCCGAGATGCCTCCGGCGCAGGATGAGGCCATGCCCGTGGCGTTCAAGGACGCGAAAGGGCTGGGCGATGCTGGTCATCGTGGTTGAAAACGCACCCCCGCGCTTGCGGGGGCGTCTGGCGGTCTGGCTTCTGGAAGTGCGCGCCGGCGTCTATGTCGGCACGTACGGTCAGCGCGTGCGCGAGATGATCTGGGGACAGGTGTGCGCCTATATCGAGGATGGCAACGCCGTCATGGCATGGGCCGCCCCGAATGACGCCGGATTCGAGTTCGATACCTGTGGACGCAACCGCCGTGTAGCGGTTGACTTCGATGGTCTCCGACTGGTTTCGTTCGGACCGGAAGCCGCCCTTCCGGCACAACCCGGCCCGGCCGCCACCACCCCTCCGCGTCGGCGGGGGCGGGGCGTACTCTAACCCAGGTTAAGATCGGTAGAATCTTTGACAATAAAATAGAGATTTGAGATCAATGTTTTCCACGAAGA # Right flank : GCCGGCCCTGCTGAAATTCGCGGCCGATGTCCTAACTTTGGGCTCAGACGCTCTCCCGGGCCCGCTTTTCGCGCGCCGCCTCGGTTGTCGTCCGACGCATTGCGTCGGCGCCGGACGCCAGGAACACGAAAGAACTGGACGATGTGTGACGCCGTGGGCGGTCGTGATGGAATGGGTGCGCAGGATCAGGTGACACGGCGTGCAGGTGGGGCCAGCCAGAACCCCACAAACGATCCCGCCATGCAGGCGGTCCTATGGTCGGCTGAATATCACCATGTCGCTGCACGCCGCAGGCCAAATATAGGCGAAGCGAGAAGGAGATTCCATGGCAGCCGGCGTCGGCATGGATTGGGACGGGTTGCAGGGCACGCGGATGCGTGTTCCCCGCATCCGCGGGGACGAATCGAGGTGGCAACGGCCCTGTTGCCGAAGGACGCTCTTCATTGCCCGCGCGCCCGGCGCCCCCGGGTCAGTTCCGTCACCACGCCGTGCAGGGTGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //