Array 1 73816-73476 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000178.1 Fischerella thermalis WC213 NODE_1344_length_75200_cov_24.965971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =============================================== ================== 73815 38 97.4 36 N..................................... CACTCATTCCGGACTCTTCTGATTGCCTCTGGGAGT 73741 38 100.0 32 ...................................... CGATAAGTTCTATAGTGTCCCAGAGTTCCCGG 73671 38 100.0 47 ...................................... AACTCAGTGCTTCTTACTGATGCCCAAGATGTTCANNNNNNNNNNTG 73586 38 97.4 35 G..................................... TCGGACGGAAACTTAGCACGACTCAGGATGCTGTT 73513 38 94.7 0 G....................................T | ========== ====== ====== ====== ====================================== =============================================== ================== 5 38 97.9 38 TGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATTAGGGATTGAAACTACCCCTCCCCAGATGCCACTGGAGCTTGCGNNNNNNNNNNAACTTCAATTAATCCCTATTAGGGATTGAAACGGCGATCGCCGCATCGGCGACTGCTGACCCNNNNNNNNNNGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACGCGACGACCTTATTGTTGACGATTCGGNNNNNNNNNNTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAATGCCCTCGGCGTGTTTACCGGTTCCTGCCAGGGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTTGCTGGATGCGAGGATGGGGGCGATGCCGTGAGCGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAGCAAGATGTCCCAGCCGACGAAGACGAAGTCGAGCCGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAAAGCCAGTCTAGATGCCAATGGGCTAATANNNNNNNNN # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGTCTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 73854-74038 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000178.1 Fischerella thermalis WC213 NODE_1344_length_75200_cov_24.965971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 73854 38 100.0 37 ...................................... CGGCTCGACTTCGTCTTCGTCGGCTGGGACATCTTGC 73929 38 100.0 34 ...................................... GCTCACGGCATCGCCCCCATCCTCGCATCCAGCA 74001 38 97.4 0 A..................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 3 38 99.1 36 TGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GAGCGCCAAGGATTGAGTTTTTGTCAATTAAAAGATAAAACAAAATCATCCCGCTTTCTCTGCAACGCCTTTAAGTTCTAATCTCAAGCAGTAAGCTTTAATTTGTCAAATGCATACTACGGATTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCAACAGCATCCTGAGTCGTGCTAAGTTTCCGTCCGAGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCCANNNNNNNNNNTGAACATCTTGGGCATCAGTAAGAAGCACTGAGTTGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACACCGGGAACTCTGGGACACTATAGAACTTATCGGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACAACTCCCAGAGGCAATCAGAAGAGTCCGGAATGAGTGGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACNNNNNNNNNNTATTAGCCCATTGGCATCTAGACTGGCTT # Right flank : CCCCTGGCAGGAACCGGTAAACACGCCGAGGGCATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCCGAATCGTCAACAATAAGGTCGTCGCGTCGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCNNNNNNNNNNGGGTCAGCAGTCGCCGATGCGGCGATCGCCGTTTCAATCCCTAATAGGGATTAATTGAAGTTNNNNNNNNNNCGCAAGCTCCAGTGGCATCTGGGGAGGGGTAGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACAAAAAAGTGTCGGAAGAGCTTTTTGTTCTTGAAAGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACGCAGGAGATCCAACCATTTTCGGCGCAATCCAGAAACGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACGCGGCACGGACGATGGTGATCCCGGCATATATGTGCCCGTTTCAATCCCTAATAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 75241-74150 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000178.1 Fischerella thermalis WC213 NODE_1344_length_75200_cov_24.965971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 75240 37 100.0 35 ..................................... GCGATCGCTGGAGATGGAGTACATCTCCGGTGGCG 75168 37 100.0 34 ..................................... CCATTGTGGGTGGCACGCGATTTCTCTAATAGGG 75097 37 100.0 34 ..................................... GTTGCAAGCGATCGCCTTGGCGAGGGAACCGAGT 75026 37 100.0 40 ..................................... TTCCGAAGAGACTATGTCGGCGACTCTTTTCGCCAGGGAA 74949 37 100.0 46 ..................................... GCTCGGCGATGCGATTTTGTTGGAGTTGTAAAGAATNNNNNNNNNN 74866 37 100.0 35 ..................................... TCCAGGAGGATCACCTCCTGGAGGATCGTCTCCAG 74794 37 100.0 37 ..................................... TTGTTGCTATTGGGATAGATGTATCTGGCATTCTTAG 74720 37 100.0 45 ..................................... ACCTTGGCATTGCCTTAGACAATAAGCCATACCNNNNNNNNNNAA 74638 37 100.0 44 ..................................... TATGCGATCGCTCCAGACCGCGAAGACTTTGCANNNNNNNNNNT 74557 37 100.0 38 ..................................... GGGCACATATATGCCGGGATCACCATCGTCCGTGCCGC 74482 37 100.0 37 ..................................... GTTTCTGGATTGCGCCGAAAATGGTTGGATCTCCTGC 74408 37 100.0 34 ..................................... TTTCAAGAACAAAAAGCTCTTCCGACACTTTTTT 74337 37 100.0 36 ..................................... TACCCCTCCCCAGATGCCACTGGAGCTTGCGNNNNN 74264 37 86.5 41 NNNNN................................ GGCGATCGCCGCATCGGCGACTGCTGACCCNNNNNNNNNNG 74186 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 15 37 99.1 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : GACGCGACGACCTTATTGTTGACGATTCGGNNNNNNNNNNTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAATGCCCTCGGCGTGTTTACCGGTTCCTGCCAGGGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTTGCTGGATGCGAGGATGGGGGCGATGCCGTGAGCGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAGCAAGATGTCCCAGCCGACGAAGACGAAGTCGAGCCGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAAAGCCAGTCTAGATGCCAATGGGCTAATANNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCACTCATTCCGGACTCTTCTGATTGCCTCTGGGAGTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATAAGTTCTATAGTGTCCCAGAGTTCCCGGTGTTGCAACTTCAATTAATCCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 8907-8721 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000182.1 Fischerella thermalis WC213 NODE_1592_length_17914_cov_21.494640, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8906 37 97.3 35 N.................................... CCATCCTCAAGATCCTAGAGGATGGAAATTGGCAT 8834 37 100.0 40 ..................................... CGCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGG 8757 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 99.1 38 AGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Left flank : ACATTAANNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTGGGGAGATCGAACTCCCCAGACGAATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGAGAAGAAGAGCTGTTCATGCCCGAACCAGATGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTAAATAAGCGATTAGCGTTCATTTCCATACCTGNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCATACCGGGAGAGGACTAAGGAGGCACGCGATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTAAAGCCTGAGAAGATGGCACCCCAATGCAGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCGATGCAGAGAATGCATTCTCCACACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 17955-14206 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000182.1 Fischerella thermalis WC213 NODE_1592_length_17914_cov_21.494640, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 17954 37 100.0 41 ..................................... CAATCGTGAGCAGAGAAGTATCTGCTCTGAGAGNNNNNNNN 17876 37 94.6 36 NN................................... AGCCTTGCGCCAGTAGTTCGGGCTTGGGCTGGGTTC 17803 37 100.0 33 ..................................... TCCAGAAGTCCGGCGAGAAGCCGAAGATAATCA 17733 37 100.0 38 ..................................... TTCCCTGGAAAACTGAAAAATGTGACAAGNNNNNNNNN 17658 37 97.3 33 N.................................... TTAGAGAACTCTTTTAGAGGGGGACTGAAGCCC 17588 37 100.0 31 ..................................... CTAACCACCATCGGAGGCGTTCCGACTTGGG 17520 37 100.0 38 ..................................... CCGAGCAGAGCGATCGCAACCTCTTTCCGAGATCGCGC 17445 37 100.0 42 ..................................... ATGTATAAGTAGCCGGGCGCGCTAGAGCGGAGGNNNNNNNNN 17366 37 97.3 42 N.................................... TGGCTGATTCAGGTACCAGACGGCGAGCAATTTTGCGTAGAG 17287 37 100.0 33 ..................................... AGCCTCTTTTCTGGGGGTGGCAGCGGTGGCACG 17217 37 100.0 33 ..................................... GGCGAACGCGCCGCCCACGGTCACCAGCTCATC 17147 37 100.0 36 ..................................... CGCGATCGCGAACTAGGAGACCTAATCACCCAGCTC 17074 37 100.0 37 ..................................... GTTCTGCCCCACCGCGATCGCATCTACTCCCGGCAGC 17000 37 100.0 34 ..................................... TCGTTCCCTGTAGGAGCAGAGGGTAAGATGTATC 16929 37 100.0 36 ..................................... CCATGCCCTTGGAAGTCTTGGCGATCGCACCATTTA 16856 37 100.0 34 ..................................... GCGCCTTAACCTACGGCTAGAGCCAGGCAACCAC 16785 37 100.0 33 ..................................... GAAAGCCAGGTGGATCTCCCGTCCTGGAATGTA 16715 37 100.0 32 ..................................... GGGCATCACGGGAGTGAACTGCACCATCCTCT 16646 37 100.0 46 ..................................... CAAGGAGGAGATCCAGCTGCTGCTGATAGATCTGTGCNNNNNNNNN 16563 37 97.3 35 N.................................... ATTATTAGTAATATTAGGCATATCGATTTAACCTA 16491 37 100.0 32 ..................................... CGGATGCCCGATTCAATCAGTGGATTGAATCG 16422 37 100.0 32 ..................................... GTATTCTCCTCGCCCTACGGTCGCTATCTCCC 16353 37 100.0 32 ..................................... AACATCAATGGCGTTGCGATCGCGAAGGGTGA 16284 37 100.0 39 ..................................... CCCTCGTTCTCCAGACTCGACTCGATCCTCTCCATCTCT 16208 37 100.0 32 ..................................... GCTGGAGGCGGCGCAAATACCGTTGGGCACTT 16139 37 100.0 37 ..................................... GCAACCTCGCTGGCTGCGCGATCGTGCCAGCACCTTG 16065 37 100.0 41 ..................................... TTCCCTTTCCTACGAGCGAGGGCTTCGAGGCGNNNNNNNNN 15987 37 97.3 34 N.................................... CGGGTGCCGAAACCAGAGCAGGGATTATTGCCAA 15916 37 100.0 35 ..................................... GCAGATGAAGATCGGCGGGCAAATATACCCCCCGT 15844 37 100.0 33 ..................................... CGGGCACGAGCCACCATCCAGCAATGGCGGCGA 15774 37 100.0 37 ..................................... ATCAGCTGCGTAGCGGTGGATCTGACCAGCGATCGCG 15700 37 100.0 41 ..................................... GGTCTGGCGCTGGACTATTGCGCCGCCCGTAGNNNNNNNNN 15622 37 97.3 34 N.................................... GGCAATCCGTAGAAGCTCCGGCAGTAGGCGGAGC 15551 37 100.0 34 ..................................... CCTCGCTTCTTTGAGCCTATGCAGAGGTATCTGC 15480 37 100.0 36 ..................................... ACGAGGCAGACATAGCTGCTGAGGTGGATTGCGTGC 15407 37 100.0 33 ..................................... TGGCAGTGTGCAGCGCGATCGCTCGCGCTACAT 15337 37 100.0 34 ..................................... CCGGCAATATCTCCGGTGGCTTGGAGTCGAGCAG 15266 37 100.0 36 ..................................... CCGGCAGCATCGAGAACAGTATCGCAAGCTGGGGAA 15193 37 100.0 36 ..................................... TGGCAGTGTGCAGCGCGATCGCTCGCGCTACATCGG 15120 37 100.0 38 ..................................... AACCGGAGCGATCGCCCCCAAAGAGCGATNNNNNNNNN 15045 37 97.3 36 N.................................... GGGGCTTGAATCTTCGTCGGGGGAGGTAATCTTCTC 14972 37 100.0 33 ..................................... TGACCCAGGATGTACCAAACACTCCGACGCTCC 14902 37 100.0 43 ..................................... GTTGCCGGAGCAAGAAGGACAAGTCATGGCTCACNNNNNNNNN 14822 37 97.3 35 N.................................... GAGAAACTTCTCGAATTCCTGAGCAAGCTCCTCGT 14750 37 100.0 34 ..................................... CACCACAACTCCTTCGACCCACCTCGCCCCATAG 14679 37 100.0 41 ..................................... GCAACCACCATGGAATCTCTCCACAAGTTTGANNNNNNNNN 14601 37 97.3 38 N.................................... GCAGCAGTAGGGCTTAGGCACTGTCAGAGCCTCATCGA 14526 37 100.0 35 ..................................... AACTGAACAAATAGAGAGGGGTGCCGGCGAATAGC 14454 37 100.0 34 ..................................... AAGCCATCCAGCACCGAGGAAAAGGAAAGCGCGA 14383 37 100.0 32 ..................................... TTGCCGGCACCCATGCCGGCATCGACGACATG 14314 37 100.0 35 ..................................... AAGATTTCCTGGAGCTACTGATTCGGATGGATTAT 14242 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 52 37 99.5 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : | # Right flank : ACGACCCCAACTCCTTCGCGAGCGAGTAGCCNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTGACAGGCTATATAGCCCACCTCTCCTACCNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGCGAGGAAGCGCAGAATCGCAGATTCTTTGGTGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCTCTGCTCGGAACGAGCGGCAGAATCACTCTGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCGAGCGACCATAGAATTGATGGTGAATCCAGTGCTGGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGATTGCGCCGCGCCTCACACTCGGCTTCTTCGCTTAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCCCGGGTTTTCCCTGATCCGACACTCCTACTCATCGGAGGTTGAAATCAAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 65413-68736 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000179.1 Fischerella thermalis WC213 NODE_1369_length_70944_cov_25.152895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 65413 36 100.0 35 .................................... AGCGATCGCTCCCCTCGCATCCAGCCGGCGTAGAT 65484 36 100.0 44 .................................... ACCTNNNNNNNNNNGATCGCTTCACCGCTTCCGATCTTGCCCTC 65564 36 100.0 39 .................................... AAGCAGGATCATCATCGCCTCGGATGCGGACTCCTGCCC 65639 36 100.0 38 .................................... AGGTACATCTATATTATATGTACATTCCGGGAAGACGC 65713 36 100.0 36 .................................... ATATGGGCTTGCTCAGCCCGAAGCTGCGATCGCTCC 65785 36 94.4 43 ..................................NN NNNNNNNNACGGTGGCGAACTCCCAACCCTCTTCGATCATGGA 65864 36 100.0 35 .................................... AGAAGGCTGGGACGACCTCGCCATAGGAATGCACG 65935 36 100.0 34 .................................... ACTTTCCGAAGACATCGTGACCAAAACCGATATC 66005 36 100.0 35 .................................... ATTTGCTTTCCCAGAGCCTGATTTCCGCTGGATAT 66076 36 100.0 40 .................................... AAATGATCCGTATATCGCAGTTATTTTTAGCGAATCGCCC 66152 36 100.0 35 .................................... AGGGGTAGGCAATAATGAAGAGCCGCTCTCGGATG 66223 36 100.0 39 .................................... ATGATGTGGATCGCCACGCTCAGCGCTCCCAATCCCTGA 66298 36 100.0 37 .................................... ACGAGACTTTCTTCGCGAGGGAGGCAGGCACGCCACT 66371 36 100.0 35 .................................... AAAAGAAGACGTCCCTGGCACCAGCTTCAAGAAGA 66442 36 100.0 38 .................................... ACCAAAGTAACCACCAGGTTTCCTGAGGAGTCAAAAGC 66516 36 100.0 36 .................................... ACTGTGCAGCGATCGCCCATCACCCTGCACAGATTT 66588 36 100.0 36 .................................... AGCTTTATGAGCTGCCTCAGCGGGAAGAACGGCGGC 66660 36 100.0 43 .................................... AGGNNNNNNNNNNGCCAAAGATTTGGGGCATGAATGGGCTAGG 66739 36 100.0 33 .................................... ACGAAGCTGCGATCGCTCCCCAGCCCGAAGCCG 66808 36 100.0 36 .................................... ACGCCAGCAGAATGGCGATGGGGTGAAGATCACACC 66880 36 100.0 45 .................................... ACNNNNNNNNNNCCCTTGAGTTGCAAGCAGCAGCTCAAAAGCCAA 66961 36 100.0 34 .................................... ACCTGCCTGGAGCCACGCCAGAAAAGAGGAGAAT 67031 36 100.0 42 .................................... ACGTGCTGGGGCTTCCCCAGAGCTTCCGAGTGACCTCCTCCA 67109 36 100.0 36 .................................... AAATCGGAGAATCTCTTGGGAAACAGGTGCTGTACG 67181 36 100.0 34 .................................... ATCGACGAATTTGACCACCCCTTGGGCAGCGCCG 67251 36 100.0 33 .................................... CGCGCGCTTCATCCATGCTCTCTGCCCGAATTC 67320 36 100.0 37 .................................... CGTACTCAGACATGATGATAGAGGGGTTGTCCGTGAC 67393 36 100.0 37 .................................... CTCTCCAATGCGTAGGGGCGATCGCGTATCCGCGATC 67466 36 100.0 35 .................................... CGAAGATATCCTGAAAAGTCGAGGCTACGACTTTA 67537 36 100.0 31 .................................... CGGATCCCCAACTTGCGATGCCATTCTCGAT 67604 36 100.0 38 .................................... CACCCCATCGACTTGACTTGAGCGATCGCTCTAAACTG 67678 36 100.0 34 .................................... CGTCGAGGGGGAGCGATCGCAACCCCTCTATGAT 67748 36 100.0 36 .................................... CTAGTATTCTCCGACCAGAGGAATCTGCACAGATTT 67820 36 100.0 36 .................................... CCCCACAAAGAGCCAACGCGATCGCGCAAAAAAAAG 67892 36 100.0 44 .................................... CNNNNNNNNNNGGGCAATGAATCCCTATGCGATCGCGCTCCCCG 67972 36 100.0 35 .................................... CCAGTCGCCACAGCGATCGCCACCGATAGCTCTTT 68043 36 100.0 32 .................................... CCAAGCTGCGGCTAAGGGGTATATGGTCGGCG 68111 36 100.0 42 .................................... CNNNNNNNNNNTGGCAGACTACTACGAGCAATCCCCGCCATT 68189 36 100.0 35 .................................... CACCGATGATGAGAAAATCCCAGCAGAAGCAGAGC 68260 36 100.0 35 .................................... CAATGCTCTGGGGACTCGAAGCAGTCCCATAAGCC 68331 36 100.0 34 .................................... CCTGGAAGAGCTGGTAGATCTGCTCAAGCCGAGA 68401 36 100.0 41 .................................... CTTCGCGGGGAGTTGGGCGGGGATTCTGGGGCAAGGGGATC 68478 36 100.0 45 .................................... NNNNNNNNNNTTCGAGAGATTGATATGCCGATACTCACCCCTAGC 68559 36 100.0 36 .................................... CGAGATCGAAAACCAATGCCCCTCCGGGATGGAGAA 68631 36 100.0 34 .................................... CCAAACTGCTCTCGCTGCTCGCGGAGCGATCGCA 68701 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 46 36 99.9 37 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : ACGGGGTGATCAAGAGGTAGCGAATGTTCGCAGCAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCAATAATAAAGATCCGTTCCCGGATGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGGACTCTGGTGGGAGTCCTACCGCGTACTCCGGGGTTGAAATCAACTAAAATCCCTATCAGGGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 2 69131-69671 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000179.1 Fischerella thermalis WC213 NODE_1369_length_70944_cov_25.152895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 69131 37 100.0 35 ..................................... AGGACTCTGGTGGGAGTCCTACCGCGTACTCCGGG 69203 37 100.0 33 ..................................... CCGGCTGGATTTCTGGGATGAGCGATCGCCGCT 69273 37 100.0 35 ..................................... AATCAATCACAAAACCGGAGTATGTAGATGCGATC 69345 37 100.0 34 ..................................... TGCCACGTATCAGATTCAATCAAGCAAGCCCAAG 69416 37 100.0 34 ..................................... GCTGATCTGATAGGTCGGGATCCCTGGGCTGTTC 69487 37 97.3 40 ....................................N NNNNNNNNNCTGGTCGGAGAATACTGCACAGAACTTCCTC 69564 37 100.0 34 ..................................... AATCATTCTTCTGCGCGATCGCGCTTAGCTCCTC 69635 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.7 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAAACTGCTCTCGCTGCTCGCGGAGCGATCGCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGGTGATCAAGAGGTAGCGAATGTTCGCAGCAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCAATAATAAAGATCCGTTCCCGGATG # Right flank : CTCAGAGTACGCTACATCACGAACAACTCGCCTTCACTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCGAGCATCGAGGTATGGATTGGCAGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTTCTAGTTGTGCATCTCGGAAGACTCTTTTTATGTTGAAATCAACTAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 70083-70984 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000179.1 Fischerella thermalis WC213 NODE_1369_length_70944_cov_25.152895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 70083 37 100.0 35 ..................................... ATTTCTAGTTGTGCATCTCGGAAGACTCTTTTTAT 70155 37 100.0 33 ..................................... TTGGCGAAGGTGATGCTCCCTCCCACCACGCCT 70225 37 100.0 35 ..................................... ATCGAGGGCTGGGACGACCTCGCGGTGGGAATGCA 70297 37 100.0 34 ..................................... CATAGTCTCTAACAACTACCTGAAGGTCGAGGAG 70368 37 100.0 33 ..................................... TCTGTGCCAAATCGACAAAGAGATCGGAATCAG 70438 37 100.0 33 ..................................... CCTGCATAGGGATCTGAGTACCGTGCAGATGGT 70508 37 100.0 34 ..................................... ACAGACAGTTACTTGATCTCCTCGTGCGTAAGCC 70579 37 100.0 35 ..................................... CAAAAAGAAATCGGGTATCAAACTCGCCTCCCGCT 70651 37 100.0 34 ..................................... TTAGGCATTACGTCGTCTCCCTCGAAGATTTCGA 70722 37 100.0 37 ..................................... AATAGATTTTTTCCATATTTTTCCCATATTTTTTCCA 70796 37 100.0 41 ..................................... GTAAAGCTCGGAGTCCCCGCCTACACCGAGGGGGATCAAGT 70874 37 100.0 37 ..................................... CTGCGCGGGGAAATCACCGAATGGGGCGCAGGTGTGA 70948 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCTATCAGGGATTGAAACAATCATTCTTCTGCGCGATCGCGCTTAGCTCCTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCAGAGTACGCTACATCACGAACAACTCGCCTTCACTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCGAGCATCGAGGTATGGATTGGCAGT # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 2895-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000184.1 Fischerella thermalis WC213 NODE_1831_length_14734_cov_19.398060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 2894 37 100.0 35 ..................................... GCGGAGAGGGGAGAAATGCCTAGGGGCGAGGGAGA 2822 37 100.0 33 ..................................... GCACCTTCCTTGGCTCTCGGAATTTGTCGAAAA 2752 37 100.0 39 ..................................... TGTGCTACCCCACAGAGGTGGGCAATCAGTTTGGGATGT 2676 37 100.0 44 ..................................... GATCTTTCCCTTTGTCGCTCCTACCGTGATGNNNNNNNNNNCGT 2595 37 100.0 36 ..................................... TGCTACGGCTTTCATTATCTTTAGCAACACCTTGAC 2522 37 100.0 36 ..................................... CGCGAAGCGTGCCGGACGGCATCTCGCGGATACCAG 2449 37 100.0 47 ..................................... GAACGCAGGATTGCTAAAGAGTACAAGCTGATTAGCGCAATCTTCGA 2365 37 100.0 41 ..................................... ATTTGGCGGCTGAGGCGACCCCAGATGCTGGANNNNNNNNN 2287 37 97.3 33 N.................................... CGGTGGTGCCGGCTTTGGCGACCACATCGCTCT 2217 37 100.0 34 ..................................... AATGCCGATTGGGTGAAGTCGATCGAGCGCAAAA 2146 37 100.0 38 ..................................... TGGTAGAGTCGCGGAACCTACCCTGCCAGCTACCAGAG 2071 37 100.0 36 ..................................... CTGTCCACTGCTCCGGCACGAAGCCTATCTGGCTGT 1998 37 100.0 34 ..................................... TCCGAGCAGGCACTCAAGCAAAGCGGGCTGGGCG 1927 37 100.0 33 ..................................... GCTCCCAAATCACCTGGATTCTGCCGGAGAGGG 1857 37 100.0 32 ..................................... GAACCGGACTTGACTGAAGGCGATCGCGTCGA 1788 37 100.0 35 ..................................... TTGCGATCGGCTGGGGGCAAATCGAGGCACAGATC 1716 37 100.0 33 ..................................... TGCCATCGACCAAGAGGCGATCGCTCACCCACC 1646 37 100.0 33 ..................................... TTTATCCTTCCCGGCTCGTGGCGCATCCGGTGG 1576 37 100.0 38 ..................................... GGGATTCTGGAAGACTTAACGAAGAATGGGCAGGTATC 1501 37 100.0 33 ..................................... TAGTGTAGCGACGAGCGACGCGTCCGTCAATCG 1431 37 100.0 35 ..................................... TTTCTCGTCAGCGAACGCGCCACCGACAGTTACCA 1359 37 100.0 35 ..................................... GATCGCGGTCAGCGCGTGGAGAAGCGCCGCCACAG 1287 37 100.0 34 ..................................... CCGGAGCAGCGAAGCTCCGCGTTCGCTGGCTGCA 1216 37 100.0 34 ..................................... TCTACCACTATCCGGTAGCACTCATCCGATTTGA 1145 37 100.0 36 ..................................... TGAAGCTTAATGACAGTCATTGCTTGACTCCAAATC 1072 37 100.0 40 ..................................... CTAGTTATGGGGGCGATCGCGCTTTTCTTTTCTTTTGGAG 995 37 100.0 36 ..................................... ATTCTCACGTAGCTTTTCCCTGACCGCGTCGAAAAT 922 37 100.0 40 ..................................... CAACCGCCTCTATTTAGATGAGAAAGACCCANNNNNNNNN 845 37 97.3 37 N.................................... TTGGCTTCTGAGATAGTGGTACAGGTCTAGAAATTGG 771 37 100.0 33 ..................................... GAATCTCCTCGGCTCCCCGCCGAATGGTACCCG 701 37 100.0 39 ..................................... GGCGCTCCCTTGGATTTGGGCGTAGTACACNNNNNNNNN 625 37 97.3 36 N.................................... GGGTGGTGGCGATCGCTCCCCTACCTATTCTCCGGG 552 37 100.0 37 ..................................... TTCTCTTTCTCGTAGTATCTCAGAACCGACTGGGAGG 478 37 100.0 48 ..................................... GCACCTCCCTACGCCGAGATCTTTATCGATCTGGCACANNNNNNNNNN 393 37 100.0 103 ..................................... CCAAAAAGTTCGCGCAGCGTGCCGGAACGGGCGGGGACAAAGCGCGATTCGGCAGGGACAAAGATTGAAACCCAAAAAGTTCGCGCAGCGTGCCGGAACGATC 253 37 100.0 32 ..................................... TTGCCCGCTTTTTAGAGAGTCGAGGGAGACCC 184 37 100.0 34 ..................................... GCGATCGTAGGCGGCGTAGATCTCCAGTTCCGGC 113 37 100.0 39 ..................................... GAAAGAGCTGAGCGAAGATTTGGGACAATCCCAGCAGAA 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 39 37 99.8 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGTCTCCCCGACTCCCCGCCGAATGGCNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTATTTATTATTCACGGAGAAGCACCATGGAGATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGATCGCTGCTGCCAGAGGGGTCTTGCGATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 3174-2994 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000184.1 Fischerella thermalis WC213 NODE_1831_length_14734_cov_19.398060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 3173 35 100.0 38 ................................... GAGTCTCCCCGACTCCCCGCCGAATGGCNNNNNNNNNN 3100 35 100.0 37 ................................... TTTATTTATTATTCACGGAGAAGCACCATGGAGATGT 3028 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 3 35 100.0 38 TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : GATTGAAACGAACAGATGACCGAGGAATCGANNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTCATGGATGAGTACAGCCAAACCATCTCCCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGGTGATACTCCTCGATGCACCACTTCATCCAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAAAGAACCGACCAATCCACCTACCGTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT # Right flank : GATCGCTGCTGCCAGAGGGGTCTTGCGATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCGGAGAGGGGAGAAATGCCTAGGGGCGAGGGAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCACCTTCCTTGGCTCTCGGAATTTGTCGAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGTGCTACCCCACAGAGGTGGGCAATCAGTTTGGGATGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGATCTTTCCCTTTGTCGCTCCTACCGTGATGNNNNNNNNNNCGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGCTACGGCTTTCATTATCTTTAGCAACACCTTGACGTTGCAACTTCAATTAATCCCTATTAGGG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 5315-3455 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000184.1 Fischerella thermalis WC213 NODE_1831_length_14734_cov_19.398060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5314 37 100.0 40 ..................................... GCGACCACTCGGATCCACACTTGATCTCCTTGCCCCAGGA 5237 37 100.0 35 ..................................... ATCAATCGGGCTGGTTTTCCCTGGAAAACCGAAAA 5165 37 100.0 33 ..................................... TTCGAGCAGAATCGGAGAAGAAACCCGGCGATC 5095 37 100.0 42 ..................................... CCATAGGTGGCACGCGATTGAAGCAACACATCTATGTTGAAA 5016 37 100.0 37 ..................................... GGGTTAATTCAATCAATAACTAGCTCTATTANNNNNN 4942 37 89.2 36 NNNN................................. TTCGGCTAGAATAATGAGTGCAACTATTCCGGGAAC 4869 37 100.0 37 ..................................... CTTGCACCACTGCTCCGATACATCTTCGTTATATCTC 4795 37 100.0 41 ..................................... CTCGATGCAGAGTATGCACTCGCCGCATTCTCNNNNNNNNN 4717 37 97.3 33 N.................................... GAACTTCTTATCATCGGCGATCGCGGCACCACA 4647 37 100.0 33 ..................................... TAGATGCGGTCTAGGGCGGAATCGATTACCCTC 4577 37 100.0 39 ..................................... TTCGGCTGCTGCGCTATCTTCTCTATCCAGTCGGGGTTT 4501 37 100.0 41 ..................................... GATTACGGTGGCTCCCGGTTCGATCGCGGTCANNNNNNNNN 4423 37 97.3 36 N.................................... CTGGAATGTATGGGGCTAAGCGGGAGGCTAGCTTTA 4350 37 100.0 35 ..................................... CCACCGTCCCTGGCATGGATGTATGCCACCCGCCC 4278 37 100.0 34 ..................................... TGGGGTGCGATCGCGGAGCAGATGTGGGGTGCGA 4207 37 100.0 31 ..................................... GGAGATTTTCGGGATCCTGCGCAATCCCGTA 4139 37 100.0 33 ..................................... GTCGAGGGGTGGGATGATCTCGCGGTGGGAATG 4069 37 100.0 33 ..................................... CATATATATATAGGAAAAAGTGTGCAGATTTCT 3999 37 100.0 43 ..................................... AAGGATTCATCGATGATATAGCTCGATCGAACTGNNNNNNNNN 3919 37 94.6 40 N.........A.......................... TCTCGACTCCAGGCACGCCCAAATCCTGAGCGCACTCAAA 3842 37 97.3 32 ..........A.......................... GGAAAGCCCTAAACCCGGAAGTAGCATACCGG 3773 37 97.3 35 ..........A.......................... CGCCATCAATCCAGATGGCGGAGCAGTATAGATTT 3701 37 97.3 32 ..........A.......................... GAACAGATGACCGAGGAATCGANNNNNNNNNN 3632 37 100.0 33 ..................................... CTCATGGATGAGTACAGCCAAACCATCTCCCAA 3562 37 100.0 34 ..................................... CTGGTGATACTCCTCGATGCACCACTTCATCCAG 3491 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 98.9 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CAATTAATCCCTATTAGGGATTGAAACGAGATTTGCCGAAGTGGTACGACCTTTAGCCCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCTCCTTGGTATATAGCCAGTATAGCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTCAATTAATCCCTATTAGGGATTGAAACGGCGATCGAGTCGCGATCGCACCACAAAACCCAGCCTGA # Right flank : GAAAGAACCGACCAATCCACCTACCGTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGTCTCCCCGACTCCCCGCCGAATGGCNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTATTTATTATTCACGGAGAAGCACCATGGAGATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGATCGCTGCTGCCAGAGGGGTCTTGCGATCGNNNNNNNN # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 4 10750-5717 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000184.1 Fischerella thermalis WC213 NODE_1831_length_14734_cov_19.398060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 10749 37 100.0 41 ..................................... TTTGCTGGACTTTTTGCTTCTCGTAGAAGCCCAGCACCGAC 10671 37 100.0 35 ..................................... GCGTGGTAGTGGGTTGTGGCTGCATCAAATCAAAT 10599 37 100.0 34 ..................................... GCGATCGCTGTTGCCGGCGTGTACATGGGGCACA 10528 37 100.0 36 ..................................... CTGTGCAGCTAGCGATCGCCTTCACCGCTATTTCTC 10455 37 100.0 42 ..................................... TGCGACATAGAGGACTTGCCGAGATTATCGAAGCCCTTACCC 10376 37 100.0 34 ..................................... GCGTGGATCGTAACCGACGACAACATCCTCAGAT 10305 37 100.0 36 ..................................... CAGCACTTCTTCGGCGAAATCGATGAGCGGGGTTGC 10232 37 100.0 34 ..................................... CTAACTCAGCCGTGAGAACTGATTGGATTCTTGA 10161 37 100.0 33 ..................................... GCCGATTCGATCCACTGATTGAATCGGGCATCT 10091 37 100.0 37 ..................................... AGGACGGGCAGATACCGAAGATGCGCCCAAGGAGTAC 10017 37 100.0 40 ..................................... CTGTATAGATGCGCTATATTAGATACAGAACANNNNNNNN 9940 37 94.6 38 NN................................... CAGCATCTGCCTGTGGAGCATCAGTATCCCGCCGGAGC 9865 37 100.0 35 ..................................... CAGGTACCACGCTGCCCACGAGACCGATATCATCG 9793 37 100.0 48 ..................................... GTCGCAATCGCCAGATTACTCGCCCATCGCGCGGCGAGTNNNNNNNNN 9708 37 97.3 34 N.................................... TTGGGGTGCCACCTGCCCCAACAAAAGCTCCATC 9637 37 100.0 33 ..................................... AAGAAAAAACAAAGATCCTAAACACCCAGCGAT 9567 37 100.0 38 ..................................... CTGTGCAGAGAGCGATCGCTGCCAGCCAGCGATCGCTA 9492 37 100.0 35 ..................................... GCCTCCCTCGGTGATAAGCAGAAAAAGAATATCTG 9420 37 100.0 34 ..................................... TGGCAAACTTAAACTCTGAGAGTGAACAAAATGG 9349 37 100.0 33 ..................................... AATCATACTTCTTTATTTAAACTCGACCATATA 9279 37 100.0 33 ..................................... GTCAGAGGCGGGGAGCAGAGAAGAGCGCGCTTC 9209 37 100.0 36 ..................................... CTGTGCAGCGATCGCTATCCTCCGACCGGAGAAAAC 9136 37 100.0 33 ..................................... GTAGATTAGGTGCTTCTCGCCACAGACCGATAC 9066 37 100.0 34 ..................................... TACGACCATCCTTTCGAGATTTGCGATCGCCAGC 8995 37 100.0 38 ..................................... CAGTATTCTCCGACTAGAGGAATCTGCACACTTTTTCG 8920 37 100.0 42 ..................................... CCGCGTCATTCCCTTGCTCCGAGATGCTCTGNNNNNNNNNNC 8841 37 100.0 43 ..................................... GACCCAGACGGCGCGATCGCAGACGAGGCGATCGCGGACGAGG 8761 37 100.0 37 ..................................... GTCGCCGAAGGGCGACTCCATGGCGACCGGCTCCTGG 8687 37 100.0 40 ..................................... CTGTGCAGCCAGCGATCGCTAGCAGTATCCTCCCCAAAGA 8610 37 100.0 33 ..................................... TCTCCCTGCGGCTGTGGGGGCGCCTCCGCTCCG 8540 37 100.0 38 ..................................... CTGGCGCGATCGCGCAACCATCGAGCTACTCGACCAGC 8465 37 100.0 33 ..................................... AGCCTAGCCGAGCTTCGAGACATGGATTGGCAG 8395 37 100.0 33 ..................................... CAGTTAGCGACCGCGCCACCGCGAAAAAAGCAA 8325 37 100.0 38 ..................................... TTTTGCATCTGTGAAGACCTCGATGATCATCTAGGAGA 8250 37 100.0 35 ..................................... GAGGCGCTAGAAAAGCGTATCGACGCGCTGGAACG 8178 37 100.0 37 ..................................... TACGATCCGCAGGATGGAACACGAGCCTGGGGTAGAT 8104 37 100.0 36 ..................................... CTTTGCAGGCAGCGCGGTAGACGGCACTGACCACGA 8031 37 100.0 42 ..................................... CCTGCCCAATCCGGGCTGGCTGGGCTGGTGGGGGCGGCAAGA 7952 37 100.0 35 ..................................... CTGTGCAGGGGGAGCGATCGCGGGCTGCACACTTT 7880 37 100.0 43 ..................................... GAAGACTCCCAAAACAGATACTCTGCCGCGCNNNNNNNNNNCG 7800 37 100.0 34 ..................................... AGATTGGGCGGCGTAAAGCCCATGGCGGATAAGA 7729 37 100.0 33 ..................................... TCTTGTATCTACAAGATTGGGCTTTTGCCCCGA 7659 37 100.0 43 ..................................... CTGTGCAGTTTTCTCTGGGCGGAGAGATCTNNNNNNNNNNACA 7579 37 100.0 37 ..................................... ACCGACGTATTGCCAGAAACAAGCCCAATCCAAATAG 7505 37 100.0 36 ..................................... CGGTCAGGGAGAGCGCTCCCCCTCGTAGTCGCAATA 7432 37 100.0 36 ..................................... CGAAGCTGCGATCGCTCAGCCCGAAGCTGCTCAGTC 7359 37 100.0 39 ..................................... TACGGGCTTGCTCCGTCCGAAGCTCCTCANNNNNNNNNN 7283 37 100.0 33 ..................................... CGGCTGAATGGATGCCGATATCCAGCAGCCGTT 7213 37 100.0 35 ..................................... AAACTGGGGATCCCCGCCTATACCGAGGGGGATCA 7141 37 100.0 40 ..................................... AGGAGATGGGGATGCAACTCATGCCGACCGANNNNNNNNN 7064 37 97.3 31 N.................................... CCATCAATTTCGGGGTGGCGGCAGCGTACGC 6996 37 100.0 42 ..................................... GAAGAGCGCTACCCTCCGCTTCCAGTTGTGTTGGNNNNNNNN 6917 37 94.6 31 NN................................... GAGGCACCACTTCATCCAAGCGGTGATTTCC 6849 37 100.0 34 ..................................... TTGCTCTTCGGGCAGTGCTTCTTCGTCGTAGTCA 6778 37 100.0 32 ..................................... AGGGCGAGCGAAGAAATCGTCGGTGGCGGGTT 6709 37 100.0 34 ..................................... AAATCAAAATCTGCCCTATACGATCGCACCGAAG 6638 37 100.0 39 ..................................... ATAGTCCCCGATGGGGAGGATTTCGGGCAGCTNNNNNNN 6562 37 91.9 35 NNN.................................. GAGATTATTTTCTGAGGAGCCTGCCAGCATTTCCA 6490 37 100.0 36 ..................................... CTCTCCCGCCAGAGAATACTGCACAGAACTTCCACT 6417 37 100.0 35 ..................................... GACATCCTGCCGCTGTATGTGCTGAGCATCCAGCC 6345 37 100.0 37 ..................................... AGGTGAAAGCGGCGATCGCTGCTCCCGGATGTATCCC 6271 37 100.0 43 ..................................... TCGCTATTTTCCTCGGCATCTTCTCCAGGTANNNNNNNNNNAA 6191 37 100.0 33 ..................................... GTGCCTTTCCCGCTTCCCGTCTTTGTGATGATG 6121 37 100.0 34 ..................................... TCCTACGGAAATCTCTGGATGAGCGGTCGAGCTA 6050 37 100.0 36 ..................................... AAAACTACCACCGGGTGCTTCCTTTTTGAGTTGCGT 5977 37 100.0 34 ..................................... ATCGGCAGATCCCTTCCCCCTGCCAATGACACCT 5906 37 100.0 45 ..................................... GAAGCCATCTTCCTGCCATTCGATACGGATGGTCGATTNNNNNNN 5824 37 91.9 34 NNN.................................. GAGATTTGCCGAAGTGGTACGACCTTTAGCCCGG 5753 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 69 37 99.5 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTTCCAGATTTAGCTTCATGATGCTCGCTCTCCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGGGCAGCATCTCCGGTGGCTTGGAGTCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTCAATTAATCCCTATTAGGGATTGAAACGCGATCGCGGCGTGGTACCACGTTCCCATCACT # Right flank : CCTCCTTGGTATATAGCCAGTATAGCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTCAATTAATCCCTATTAGGGATTGAAACGGCGATCGAGTCGCGATCGCACCACAAAACCCAGCCTGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCGACCACTCGGATCCACACTTGATCTCCTTGCCCCAGGAGTTGCAACTTCAATTAATCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 5 11615-11139 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000184.1 Fischerella thermalis WC213 NODE_1831_length_14734_cov_19.398060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11614 37 100.0 34 ..................................... GCCGATGGCTGCGATCGCCCAGCCATCGAGGAGC 11543 37 100.0 34 ..................................... TCCGCTAACTCTTTTGCACAGCCCTGGAACTCTT 11472 37 100.0 39 ..................................... CCCGTAGATACGGGGTCATTGCGATCGACCATACGCCTC 11396 37 100.0 40 ..................................... CTGAATCAGGGATAACCATCGCAGGGCAGCCCGACCAGGA 11319 37 100.0 36 ..................................... AAGGCTGGGACGCCCTCGCAGTAGGGATGCACGTGA 11246 37 100.0 34 ..................................... CTTCCAGATTTAGCTTCATGATGCTCGCTCTCCT 11175 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGATGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGAACCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCT # Right flank : CGGGCAGCATCTCCGGTGGCTTGGAGTCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTCAATTAATCCCTATTAGGGATTGAAACGCGATCGCGGCGTGGTACCACGTTCCCATCACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTGCTGGACTTTTTGCTTCTCGTAGAAGCCCAGCACCGACGTTGCAACTTCAATTAATCCCTATTAGGGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 20061-20237 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000186.1 Fischerella thermalis WC213 NODE_2094_length_91007_cov_23.969145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 20061 37 100.0 33 ..................................... TTGCTTGGGTGCTGTGGTGCGATCGCTACCATC 20131 37 100.0 33 ..................................... CGGGACAAACTCCGGGAGAGCGACGAGAAAATC 20201 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 100.0 34 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAT # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : TATCCCGACCTACCGTCCACAGAAGGCAACCTCGGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGAGCCGTGAGCAGTGGAATATTTCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATGGATGATGATGCTACGCTCCCGGCACTCCCCGCTGGTTGCAACTTAAATTAATCCCTATTAGGGAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 20634-26477 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000186.1 Fischerella thermalis WC213 NODE_2094_length_91007_cov_23.969145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 20634 37 100.0 35 ..................................... GGATGATGATGCTACGCTCCCGGCACTCCCCGCTG 20706 37 100.0 36 ..................................... GGAATCCCTTGCCACCCAGCACAGGGAGGAATTCGA 20779 37 100.0 34 ..................................... GCAATGGCGCAAGTGATAGCACCAGCGATAGGAT 20850 37 100.0 33 ..................................... AGACTAGGTGGCGATCGCGGGCTGCACAGATTT 20920 37 100.0 37 ..................................... TTCGCATTCGGCAGCGATCGCCATCGAATTCCGCTCC 20994 37 100.0 40 ..................................... GCTGCCGGGTGGGCTTGGTTCGCTCGGCATTTCGTCGCTG 21071 37 94.6 37 ...................................NN NNNNNNNNACCGACGCTAGGGTAGCTCCCTGGTTCGA 21145 37 100.0 35 ..................................... AGCGATGTATTTTAGAAATTTACCCAAATCCTCGC 21217 37 100.0 36 ..................................... ATGTCCGGCATCTAGGGCTTGCAGTGCCTCCTTCCG 21290 37 100.0 35 ..................................... CATCTGCACTTGGAGCGCTTCCATGGAGTTGGAGA 21362 37 100.0 34 ..................................... CCCGAATCGGAGATGGGATTCATGGGGGAATCTT 21433 37 100.0 38 ..................................... GAGCGCAAGATCGCCAAAGAATACAGACTGATTAGCGC 21508 37 100.0 35 ..................................... GCGGGTCTGCGGTCGCCGATGCTGCGATCGCGACA 21580 37 100.0 40 ..................................... GCACTGATCCATTTTATCCAAAAAACCCGGACTGGAGAGT 21657 37 100.0 33 ..................................... GAGTTCCTTTTCGACGGAGATCCCAAAACCTGG 21727 37 100.0 34 ..................................... CTTCCTTGCCTTCGCGAATCTTCAGGATCACCTC 21798 37 94.6 49 ...................................NN NNNNNNNNGGCATGTGGCTCTCGCTCATTGCCACGCCAGCCAAGTCCGG 21884 37 100.0 35 ..................................... TTCTCCTTTAAAGCTTTTAATGTCTCCGTGTATCG 21956 37 100.0 34 ..................................... TACTCCTTGGCTGTACATACCTACTCTAGCACTC 22027 37 100.0 34 ..................................... TCCGAGCGATCGCTGCTCGGAGATTTTTGCTTGG 22098 37 94.6 44 ...................................NN NNNNNNNNGATTCCAGGCAAGGGCAGGTGCTGGAAGCGCTCAAA 22179 37 100.0 44 ..................................... CGCGAGCTTCTTCGCTGCTTTCTCCTCTTCCATCTCCTGCTCGA 22260 37 100.0 34 ..................................... TTTGATGAAGCAGCGATCGCCGGCTCGAAGCCCT 22331 37 100.0 35 ..................................... CAGCCAGCGATCGCGGTTGATTGCCAGGGTGGACT 22403 37 100.0 33 ..................................... CCAGTAGATCGCGCCGAAGAAGGTGCGGATGTC 22473 37 100.0 47 ..................................... CNNNNNNNNNNTTTCGGCGAAGACACTTTAACCCGTATCGAAGCGCT 22557 37 100.0 38 ..................................... GAACCGCGTCGACGACGCGGTTTTTATTCAGGAGAAAA 22632 37 100.0 40 ..................................... GAGATCTGTGCAGAATCTGGCAGCGATCGCTGGCTGGCAG 22709 37 100.0 41 ..................................... TTTCTCCGGCAAGGGGAAGAGGAAGAAGCCCGCAGTAGCCT 22787 37 100.0 34 ..................................... AGGAACTTCCGGACGCGCCGCCCCTTCGCGACTC 22858 37 97.3 41 ....................................N NNNNNNNNNACTCAACCCAGCCTACCGCGACCAAAAGCAGA 22936 37 100.0 36 ..................................... TCTCTGAATGGTATCGGCAAGCCGCGGAAGGCTCAC 23009 37 100.0 35 ..................................... CCTAGAGAGCAGAAGTGGCTCGCATGGGCGTGTGG 23081 37 100.0 37 ..................................... GAAATAGACCCCGATGCCCAAGAGGTACTGCGATCGC 23155 37 100.0 37 ..................................... CTCGACCGCGACTGGGGCTTTCCAATTTTTCGTGAAT 23229 37 100.0 39 ..................................... TCCGGGGTGGTGGCAGCTGGTGGAATCCAGCCACAGGTC 23305 37 100.0 41 ..................................... AATGCGCAAGTCATCCCTCCCATGTATTGGGATAGGGGATA 23383 37 100.0 41 ..................................... TTAGGCATTACGTCGTCTCCCTCGAAGATTTCGAGTACCCG 23461 37 100.0 42 ..................................... GAATCCACAGCAACCAAATTAAGTGAATCAATATCGCGCAGT 23540 37 100.0 34 ..................................... CGGCGGCGCCGGGTTTGGCGACCACATAGCACTC 23611 37 100.0 34 ..................................... TCTGTGCATGGGAATGAGTTGAAGATGGCATCGT 23682 37 100.0 40 ..................................... GCCTGTACTTGCTAGGCGATCGCCACTCGATGCGTCATGC 23759 37 100.0 35 ..................................... ACACCTGTTCAGATCTCCCAAATCCTGCGCAATTT 23831 37 100.0 33 ..................................... GGCAGCTCTGGCGGCAGGTATTGCCCCGCAAAG 23901 37 100.0 42 ..................................... NNNNNNNNNNAGATGACCGAGGAATCGATGCGATCGCTGCAA 23980 37 100.0 34 ..................................... AAAAGCCGCTTCATATTTTGAGTACCAAGGGCTA 24051 37 100.0 33 ..................................... AGTACTAACCGGACAGGCTAACAGAGTACCCGA 24121 37 100.0 32 ..................................... ATCGGTGCCTCCGCCCTTCATAGCAAGGAACG 24190 37 100.0 34 ..................................... CCGGCACCCATGGGAAGATCGTTGGCTGGAGGGG 24261 37 100.0 36 ..................................... CGGATGGCTGCGAGCGATCGCCGCCATTGCCGGATG 24334 37 100.0 36 ..................................... GGATGGGCGATAATCCATCCGAATCAAAAGCTCCAG 24407 37 100.0 39 ..................................... GAGATCGCTGCGATCGCGTGCTAGACTGTTTGGCAACAG 24483 37 97.3 38 ....................................N NNNNNNNNNACTGATGCCGAACGAGAATGAATGGGGGA 24558 37 100.0 33 ..................................... TACGGGATCGCCCAAGACCCCGAAAACTTACAG 24628 37 100.0 33 ..................................... CTGTGCAGGCAGCGATCGCCCCAACATCTGAGC 24698 37 100.0 36 ..................................... ATCTTCTTCGTATTCTTCGGGGATCAGGGATTCTTC 24771 37 100.0 38 ..................................... NNNNNNNNNNTCGCCGACCACCCCTCGCGCTCCGCCGA 24846 37 100.0 34 ..................................... CAATCCGGAAGACTCTGAGGAACGCACAGCACGA 24917 37 100.0 33 ..................................... TCGGTGGGCGCCGGCTTCGGGAGGGTGCCGCGC 24987 37 100.0 40 ..................................... GGCGATGATGATTTTCTGCTATGCATCCAAGCCGCTGCTA 25064 37 100.0 35 ..................................... CCCTTGGTATATATAGCCAGTATAGCACGGATATA 25136 37 100.0 33 ..................................... CGGGCACCAGCCACCATCCGGCAATGGCGGCGA 25206 37 100.0 32 ..................................... CCCGTATGCAGTGAGATGCTCCTCAAGGTAGG 25275 37 100.0 38 ..................................... TGAATAATGGGTGTATCCCGCTCGCGCCACAGAATACC 25350 37 100.0 36 ..................................... AACCAAATGGACACCTACAGCTCCGCAGAACTCTCC 25423 37 97.3 40 ....................................N NNNNNNNNNCTATTCCGCCGATCAGCTTTGCGCTGCGGCT 25500 37 100.0 33 ..................................... CCAATCTCTTATCCGAATCGCGATCGTATGCGG 25570 37 100.0 33 ..................................... ATTCCCCGCGCAGAGCTTGGCGGCGGGGATACA 25640 37 100.0 32 ..................................... GGTGCCGGATTCAAAAAGAAATCGGGTATCAA 25709 37 100.0 34 ..................................... CCTGTACCCCTAGGATATTGAAGAAGTGCCTAGC 25780 37 100.0 35 ..................................... CACGAAGGATGTCGCCGCCGCCACGGAGCAATTTC 25852 37 100.0 38 ..................................... CTCGCAGATTCTCTGGGGCATTCTCGGCATCGGGCAGA 25927 37 100.0 43 ..................................... TGCTCGTCGCTAGTTGGCTGCTCGTTGCTAGCTGGTTGCTCGT 26007 37 97.3 42 ....................................N NNNNNNNNNTATCCGGACGAATGAGGCGATCGCCCATCAGAT 26086 37 97.3 36 ....................................C GACGCCGGCATGGGTGCCGGCAAAACCAGCCAAGTG 26159 37 97.3 33 ....................................C CTGCCAAGCGATAGGCATCTTCGGCAGAGAGGG 26229 37 97.3 36 ....................................C TGAATGCCTATTGCATTCTGGGGCAAGTGGCATTCC 26302 37 97.3 33 ....................................C TGCGGCATCGAAAAGGATGCAGCGATCGCTCGA 26372 37 97.3 32 ....................................C CTTCTAGGACGGCTTTTCCTGCTCTCTAATAT 26441 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ================================================= ================== 80 37 99.5 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAT # Left flank : GCAACTTAAATTAATCCCTATTAGGGATTGAAATCGGGACAAACTCCGGGAGAGCGACGAGAAAATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATATCCCGACCTACCGTCCACAGAAGGCAACCTCGGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGAGCCGTGAGCAGTGGAATATTTCT # Right flank : CACCTATATATAGCTGCCAATAGCGCCAGGGTAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAGCCCAGCATCCCGGAATACTCCTAGGATCTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATCAGAGAAAAGTACCAAAATCCTTCGCTGCGTCGTCTGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATCCGGAATCCCCTTGGAGATTCCATCCTCGAAGGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATGCTAGTTTGTAGTTCATATTGAGGTCTCCTAATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATCTTGCATGTTGCCTACCTCGGTGGGCAGCTGCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATGGAGGGAACAGTCATGAGAACGTCCCCACGCCTTAGTTGCAACTTAAATTAATCCCTATTAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 1798-2636 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000175.1 Fischerella thermalis WC213 NODE_1156_length_11020_cov_20.365789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1798 37 100.0 33 ..................................... CTCTCCCTGACCGGGCTGCAAACCAAAGACAGC 1868 37 97.3 42 ....................................N NNNNNNNNNATTTCAGATGTGGGAATTTGTATGTCGCGATTG 1947 37 100.0 36 ..................................... CCTGACAAGGTGCGACTCCACGGGGAACGATCCACC 2020 37 100.0 31 ..................................... CTGCTCGCCTACATCGAGCATATGGAATCCG 2088 37 100.0 33 ..................................... GCTTGCTGGTGATCGACGAGCTGGTGACAGTGG 2158 37 100.0 34 ..................................... GACGCGATGCGTAGGATGGGCAGAGAAGACTTGG 2229 37 94.6 39 ...................................NN NNNNNNNNGAGGGGATCCAGGCATCGCCCTCTCTGGGGA 2305 37 100.0 35 ..................................... CAATGATCCACGACGAATCAGCCATTAACCACAAG 2377 37 100.0 42 ..................................... CGTATGTGGGGCGGACTTCCATCAGCATTATCGGTGCCGAGT 2456 37 100.0 35 ..................................... GCGATCGCCCCACCCGCCCCACATCTGAGCAGCGA 2528 37 100.0 35 ..................................... CCGGAATACTCAAACCATCGATAGATGGTTCGCTC 2600 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 99.3 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCTTGGCTTGATGGGGAGATGCTTATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTCTCACTTCTTAAAACAGCCCTCAAATCATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGATTTTTGTGGGTCTCCCGGAGACCCAGATGAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTGCCTGCAAGGGGATTGCCCACCGGACTATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 2 2888-5086 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000175.1 Fischerella thermalis WC213 NODE_1156_length_11020_cov_20.365789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================== ================== 2888 37 100.0 33 ..................................... TTTCTCACTTCTTAAAACAGCCCTCAAATCATT 2958 37 100.0 35 ..................................... GGATTTTTGTGGGTCTCCCGGAGACCCAGATGAAA 3030 37 100.0 32 ..................................... TTTGCCTGCAAGGGGATTGCCCACCGGACTAT 3099 37 100.0 34 ..................................... TGGGTGCCCGCGAAGGTGAATAGGGTCTCGGCGG 3170 37 100.0 36 ..................................... AGAGATCGCGATCGCGCCCAAGCCGCTTTGCTTGAG 3243 37 100.0 56 ..................................... GANNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCCACCCAGCACAGGGAGGAATTC 3336 37 100.0 35 ..................................... ACCTGTCCTCCACTTTATCCGCATAGCCTGCCGTG 3408 37 100.0 37 ..................................... AAGTCCAGACTCGATGACCCAAAAGCACACCAAGATG 3482 37 100.0 35 ..................................... GGAATCTCCGATTTCTCGATGATTCTATCGTGGTC 3554 37 100.0 36 ..................................... TCCTAGGAAAGCGCGACTCGGATGCGAAGCTAATCA 3627 37 97.3 45 ....................................N NNNNNNNNNCCTCGGCATTCGGCGATCTGATCACATGCACGGGAG 3709 37 100.0 34 ..................................... CCTTCTCGGAGAATGAGCTTCCTGCCACTAGGAG 3780 37 100.0 37 ..................................... CCTAGACCCATACACCACAATACCACGTCCCTGTGGC 3854 37 100.0 46 ..................................... CNNNNNNNNNNCCGATAGGCATCGACCCCGATCCCTACAAGGAATC 3937 37 100.0 33 ..................................... CCCTGGCGTTGCCCGAAGCTCCAGCAGATATCT 4007 37 97.3 42 ....................................N NNNNNNNNNGCCGATCGCTAACCCTAAGCGGCTAGCCAGTAC 4086 37 100.0 34 ..................................... CCATGCCCTTGGAAGTCTTGGCGATCGCACCATT 4157 37 100.0 36 ..................................... CAACTTCTTGGCGCTATCTGGAGCAATAGCCCGGAA 4230 37 94.6 37 ...................................NN NNNNNNNNGATCTTCCGCGATCGCCGGAACAACAACG 4304 37 100.0 43 ..................................... TGCATACCGGTGGATCCTGCCCGCGATCGCACCCAGCGGAGAC 4384 37 100.0 34 ..................................... TACATGTTTCTTTTTTTTTGATAAAATCAAATTG 4455 37 100.0 37 ..................................... GCCCATCGAGGTAGGCAATCTGCAAGTACTGCCCTGT 4529 37 100.0 32 ..................................... GTCGATGGGGAAGAAAGCAGCTTCACCATCAA 4598 37 100.0 34 ..................................... AGCTGGCACATCGTGGTCGTCGACCCAGACGGCG 4669 37 100.0 47 ..................................... GTGNNNNNNNNNNAGCTATTATCTATCGACTTCTCCCATACATTTGG 4753 37 100.0 39 ..................................... CGATCGCTGCACAGATTTCTCCATCCGATGGCAGCGATC 4829 37 100.0 37 ..................................... GCCAACCTGTCCGTTGGGAGTCCTAGTTCTTTGCAGG 4903 37 100.0 40 ..................................... NNNNNNNNNNGGAGTATAACTACGACAACCTGGAAATTAT 4980 37 100.0 33 ..................................... AGTCAGCCTCCTCAAGCCAAAGCTCAACCCAGC 5050 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================== ================== 30 37 99.6 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AATTAATCCCTATTAGGGATTGAAACCGTATGTGGGGCGGACTTCCATCAGCATTATCGGTGCCGAGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGATCGCCCCACCCGCCCCACATCTGAGCAGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCGGAATACTCAAACCATCGATAGATGGTTCGCTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCTTGGCTTGATGGGGAGATGCTTATC # Right flank : CTTTACGATGCCTCGTTTCTCCTCTTGAGACAAGACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCCTTGGCGGTGCAGAGGCACGGGTGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATGAATCGGGCTTGGCGGTGCTAGGGTGCCCAACCCCAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGGATGCTTAGTGCAGCCCGGATCGGAACCGTGCACCCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 3 5384-7334 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000175.1 Fischerella thermalis WC213 NODE_1156_length_11020_cov_20.365789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5384 37 100.0 39 ..................................... ATGAATCGGGCTTGGCGGTGCTAGGGTGCCCAACCCCAG 5460 37 100.0 39 ..................................... GGGATGCTTAGTGCAGCCCGGATCGGAACCGTGCACCCA 5536 37 97.3 43 ....................................N NNNNNNNNNGCGGCTCAGATGTGGGGCGATCACGGCTCAGATG 5616 37 100.0 35 ..................................... CAAAGCGCGATCGCTCTGGGACTAGCTAGTATGGG 5688 37 100.0 36 ..................................... GCCGATGCCGCGATCGCGACAAACTGAGCCGGCGGG 5761 37 100.0 39 ..................................... ACGGTGAAGTGTCTATCATCACACTTTACGATCCAAGCT 5837 37 100.0 34 ..................................... GGCACAGCCAGATAGGCTTCGTGCCGGAGCGGTG 5908 37 100.0 35 ..................................... TTCCCTGGAACTCTTTCATCTGGGTCTCCCGGAGA 5980 37 100.0 35 ..................................... CTTTACTGCGATGCAATGAAACTTGAAGATGCAAT 6052 37 100.0 37 ..................................... CGATGGTTGAGATCAAGTCTGAATTGAACAACATAAG 6126 37 97.3 41 ....................................N NNNNNNNNNTCGCCGAGAGCAGCAGCCCCGCGAAAAGCTCG 6204 37 100.0 35 ..................................... CTTTGCGATCGCGCCCTACCTCTCCGCCACCAACC 6276 37 100.0 31 ..................................... CAGTATTCTTTCCCCAGAGGAATCTGCACAC 6344 37 100.0 42 ..................................... NNNNNNNNNNCTTTCTGCCAGGAGACTCCGACGCGACTATAT 6423 37 100.0 32 ..................................... AATTTACCGCAACATCCGCCGGCACATCTATA 6492 37 100.0 34 ..................................... TCCGTTTTTCTTCTTGCTAGTAAGCGCGATCGCT 6563 37 100.0 37 ..................................... GATCTGACCTTGCCGCCAGGCACTGCGGTGGGCGATC 6637 37 100.0 37 ..................................... CAGGTGATCGCTGGCTGGCTCTGTGTGGGCGATCGCT 6711 37 100.0 33 ..................................... TGACGAACTCCCCCATATGGAGCCAGGTGGAAG 6781 37 91.9 36 ..................................NNN NNNNNNNTTGTACCCGAAAACAAAAGCTCCAGCGAC 6854 37 100.0 35 ..................................... AAGGGGTGCTGCGACACGTGGACAATCCAGCAAGG 6926 37 100.0 34 ..................................... GCCGGAAACCCAGTGCTACGAAGAGCTTAAGGGG 6997 37 94.6 42 ...................................NN NNNNNNNNGGCTTTGGGAGCTTCGGCGGAGTATTTACTGGCT 7076 37 100.0 40 ..................................... CGCCCCACGTGGGAGCTAGGGGACAACGGGATACTGTGGA 7153 37 100.0 36 ..................................... CGAGTCGGGATCCACCGCGCGATCGCCGGAAGAGCA 7226 37 100.0 35 ..................................... CCCCCGCCAGCCAGATTAGCGAGAGAATATCACTC 7298 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 27 37 99.3 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AGTCCTAGTTCTTTGCAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNGGAGTATAACTACGACAACCTGGAAATTATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGTCAGCCTCCTCAAGCCAAAGCTCAACCCAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTACGATGCCTCGTTTCTCCTCTTGAGACAAGACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCCTTGGCGGTGCAGAGGCACGGGTGT # Right flank : CATATCTCGGCTCGCCGCTCGATGCGCTGCTATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGATGAGTGCTACCGGATAGCCTCCTCCGGCTGCTCTTGTGCGATCGCCTCGGACCTATTAGGGATTGAAACAGATGAGTGCTACCGGATAGTGCTAGAGAATCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTCCCGAACAGGATTCGGAAATTGGACTGTATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTGGCTGGAGCTTTTCCCACAGGTAGCCACAATCTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGNNNNNNNNNNGGGCGTGGTGGCAGAAATCATCCACGATCCCTCTGCCCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGGGGAATCTCCCATGGCATGACCCCCAGGTGTTGCAACTTAAATTAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 4 7518-8424 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000175.1 Fischerella thermalis WC213 NODE_1156_length_11020_cov_20.365789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 7518 37 100.0 33 ..................................... GTCCCGAACAGGATTCGGAAATTGGACTGTATC 7588 37 100.0 36 ..................................... GTGGCTGGAGCTTTTCCCACAGGTAGCCACAATCTC 7661 37 100.0 50 ..................................... GNNNNNNNNNNGGGCGTGGTGGCAGAAATCATCCACGATCCCTCTGCCCA 7748 37 100.0 31 ..................................... CGGGGAATCTCCCATGGCATGACCCCCAGGT 7816 37 100.0 32 ..................................... AACGTGATTATCAAACCATCAAGTTCCAACGC 7885 37 100.0 32 ..................................... TATCGATTTCTGGGCTGAAGGACACCCGTGGA 7954 37 100.0 36 ..................................... CTGCCGACTGCCAAAGTGATTTGCCACGATTTGTCC 8027 37 100.0 32 ..................................... CAATGGCTGCCCATTGATGCGCACTGAGTTCA 8096 37 100.0 39 ..................................... TCATTGTCAGCGCTCTTCTGCGGAATCGTACGCGATCGC 8172 37 100.0 33 ..................................... GGATTAGCCTGGCGATTTTCCTCGGCATTTTTT 8242 37 100.0 34 ..................................... GAGAGAGCGATCGCGCTTATTTCTGGAATAATGG 8313 37 100.0 38 ..................................... TTTGGCGAATAGACGCACCCTGTGGGGACGCGTCCCTC 8388 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 13 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TATTAGGGATTGAANNNNNNNNNNGGCTTTGGGAGCTTCGGCGGAGTATTTACTGGCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGCCCCACGTGGGAGCTAGGGGACAACGGGATACTGTGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGAGTCGGGATCCACCGCGCGATCGCCGGAAGAGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCCCGCCAGCCAGATTAGCGAGAGAATATCACTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATATCTCGGCTCGCCGCTCGATGCGCTGCTATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGATGAGTGCTACCGGATAGCCTCCTCCGGCTGCTCTTGTGCGATCGCCTCGGACCTATTAGGGATTGAAACAGATGAGTGCTACCGGATAGTGCTAGAGAATCT # Right flank : CATCCCGCTGCTCCGGGATGCCCTAAACCGGAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCCTGCCGCCAGGCGCTGCGGTGGGCGATCGCATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAACGTGACAACCCAGCAGACCGGCATTGCCCAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 5 8820-9214 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAK01000175.1 Fischerella thermalis WC213 NODE_1156_length_11020_cov_20.365789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 8820 37 100.0 34 ..................................... AACGTGACAACCCAGCAGACCGGCATTGCCCAGA 8891 37 100.0 35 ..................................... CTCTCCCCGCAGCCAGCGTACTCTGCGAGAGTTCC 8963 37 100.0 36 ..................................... AAAGAATAACTGGATGGCACTAACAGAAGGACTATC 9036 37 100.0 34 ..................................... TGCTCCTGATTCCATACGAAATTTCTGTTGATTA 9107 37 100.0 34 ..................................... CAGCCCTGTAAACTTGGCTATTAGCGCTTTGAGG 9178 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTTAAATTAATCCCTATTAGGGATTGAAACTTTGGCGAATAGACGCACCCTGTGGGGACGCGTCCCTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCCCGCTGCTCCGGGATGCCCTAAACCGGAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCCTGCCGCCAGGCGCTGCGGTGGGCGATCGCAT # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTTGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCCCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //