Array 1 196639-197451 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPCF01000009.1 Klebsiella pneumoniae strain AR_0040 scaffold00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196639 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 196700 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 196761 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 196822 29 100.0 32 ............................. GCACCCTCACGTATACCTTTTGCACAGTGTTA 196883 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 196944 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [196998] 196998 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 197059 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 197120 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 197181 29 100.0 32 ............................. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 197242 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 197302 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 197363 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 197424 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.3 31 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3126683-3124033 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPCF01000002.1 Klebsiella pneumoniae strain AR_0040 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3126682 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 3126621 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 3126560 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 3126499 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 3126437 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 3126376 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 3126315 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 3126254 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 3126193 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 3126132 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 3126071 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 3126010 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 3125949 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 3125888 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 3125827 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 3125766 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 3125705 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 3125644 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 3125583 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 3125522 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 3125461 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 3125400 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 3125339 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 3125278 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 3125217 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 3125156 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 3125095 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 3125034 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 3124973 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 3124912 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 3124851 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 3124790 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 3124729 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 3124668 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 3124607 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 3124546 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 3124485 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 3124424 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 3124363 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 3124302 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 3124241 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3124180 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3124119 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 3124061 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //