Array 1 83115-87042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFDF010000010.1 Klebsiella pneumoniae strain 6-39 NODE_10_length_181221_cov_52.280815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83115 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 83174 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 83235 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 83296 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 83357 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 83418 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 83479 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 83540 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 83601 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 83662 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 83723 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 83784 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 83845 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 83906 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 83967 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 84028 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 84089 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 84150 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 84211 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 84272 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 84333 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 84394 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 84455 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 84516 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 84577 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 84638 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 84699 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 84760 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 84821 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 84882 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 84943 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 85004 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 85065 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 85126 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 85187 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 85248 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 85309 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 85370 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 85431 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 85492 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 85553 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 85614 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 85675 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 85736 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 85797 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 85858 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 85919 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 85980 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 86041 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 86102 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 86163 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 86224 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 86285 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 86346 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 86407 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 86468 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 86529 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 86590 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 86651 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 86712 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 86773 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 86834 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 86895 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 86956 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 87014 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //