Array 1 318111-317925 **** Predicted by CRISPRDetect 2.4 *** >NC_015682.1 Thermodesulfobacterium geofontis OPF15, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================== ================== 318110 24 100.0 30 ........................ CTTTGCAAAGCTTCAAATCTATTATCAATA 318056 24 95.8 30 ..T..................... TCTCTTAAAGCCCTCTGCTCAGCTAATACA 318002 24 100.0 30 ........................ CTAAGCAAAGATTCGAACCTCTTGTCATTT 317948 24 83.3 0 ........T...A.T........T | ========== ====== ====== ====== ======================== ============================== ================== 4 24 94.8 30 GCCTCAAACCTTGCATTCATCTCC # Left flank : TTATAATGTGGTCCGAGGGGCAAACGAATAAAACTTCAGAAGGCTCAACACTAAGCCTTTCTAAACAATATTTTATTCCAAGGGCTATAGCAGGGGCGGTGTTTCTTCTTGCTGGCTCAAGAAGAATTTTATCGGTAAGGTTTTCAGAAATCTCGTTTAACTCTGCAAGCACATGAAATTTATACTGCTCATTAGTAAGTAAGATAATGTCTTCAGGAGATGAAATTTTTAAAATCCTTTCAATTGTTTGCTGAAGGAGGGATTTTTTGCCATTAAGTTTCAAAAATTGCTTAGGGTAAGTTTCTCTTGATGCAGGCCAAAGCCTTGTTCCTGAACCACCAGCAAGAATTAAAACTTTCATCTACCCTTTTAAAAACCCAAATAAAGTTATAAGAATAGCAAGAAAAGAAAACCCTACTACTATTAACCACTGCATAAAATTAAAACGCCTTTCTAAAGCCTCAAATCTCTTATCCATAGCCTCAAATCTTTTATCCATT # Right flank : TCTCTCAGAGCCTTAAGCTCCTCTTCCACCCTAATAAGCCTCTCAAGCAAAGAAATAGCCTTTAATTCTTTTTCCTTCTCTTGAAGATATTGAGATAAAACCTCAGGAAGAAGAGAAAGTATAATCTGCTTTAATTGTTCCTCAGAAAATTCCTGCATAAGGAAAGAATAAAATACCTGTTAGATTTGTCAAGAGAAGAGTTAGATTTGTCAAGAGAAGAAGAGAGTACGTCAGGAGTATAACCTGACAATCTTTAGCTGTTTTTATGTCAGCCAAAGCTTGATCAAGCCATCCCAAAACTTCCTTTAAGTTCTTCACAGTTTAACTATAAAATTTATTTTTCAAGAAATTTTTAATACCCTAATTTAATCAACATCCATAAATGAGTTTGTAAAATTAGCCCATAAAAAATTTTATGTTATAATTTTATGTAACTTAATAATAATAAGTATAAAGGACATGTTTCAAAATTTAAGCAAAGTAATAAAAATTTGTGGTAA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAAACCTTGCATTCATCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 1115343-1118448 **** Predicted by CRISPRDetect 2.4 *** >NC_015682.1 Thermodesulfobacterium geofontis OPF15, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================= ================== 1115343 34 100.0 43 .................................. ATTACAAAAATAAAATTTTTCATGTGGACAGGTCCATTCAAGA 1115420 34 100.0 42 .................................. AAATTGATCATAAAGTATTCTTTCAATTGTCTCTTTCAAATT 1115496 34 100.0 45 .................................. ATTTCGTTGAACTTCTTTATCTTACTCGCACACTCTTTTTCACAA 1115575 34 100.0 40 .................................. AACCTCTTTGTAAATCATTTTAACCCTCCCTTTTTTTATT 1115649 34 100.0 44 .................................. ATCTTCCGGTTTTGGTTTGTGCCATACTGGGAATTCAAATACGA 1115727 34 100.0 40 .................................. AACAGGACATTTTTCTAACATAACCTTACCTCCTTTTTAA 1115801 34 100.0 38 .................................. AAAATTGCTCTATCCTCTCAAACTCAACTACTCTAAAT 1115873 34 100.0 43 .................................. CACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1115950 34 100.0 42 .................................. AATACAAACCTCTTTACCCTCAGCACAAAGCTCTTCATATGT 1116026 34 100.0 41 .................................. ATGTGGTAATTTTTTTTATCATGGCTTACACCTCTTTTTTA 1116101 34 100.0 38 .................................. AAAATGATTTAATTAAATGTTGATAGTTCAACCAAAAG 1116173 34 100.0 45 .................................. AAAGAGAGGAGTGGAGGATTTATTCAATTTTGATGGTAATTTCGG 1116252 34 100.0 42 .................................. AATACAAACCTCTTTACCCTCAGCACAAAGCTCTTCATATGT 1116328 34 100.0 39 .................................. ATCTTTTTTTTCTGGCATAATAACCCTCCTTTATATTTT 1116401 34 100.0 39 .................................. AATAAGATCCCTGTCTTCTCCTATGATAATGAATTTTTT 1116474 34 100.0 41 .................................. ATATACAAAAGCCACTTTCCTTATAATAAGGACAATTTTTA 1116549 34 100.0 38 .................................. AAAATGATTTAATTAAATGTTGATAGTTCAACCAAAAG 1116621 34 100.0 42 .................................. ATTGACACCTCCGTAAACTTTCGTATCGGCTGTATAATAGAA 1116697 34 100.0 42 .................................. AGATCTAAATCTACCTCCCCTTCCCTTTTCTCTTTCAAATGG 1116773 34 100.0 43 .................................. CTTTTTCATTTTTGTCCTCCTCCTTTTGATTTTTTATTTTTAT 1116850 34 100.0 43 .................................. CACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1116927 34 100.0 34 .................................. ATTAACATCTGCAAAATTTATAGGAATGTTAATG 1116995 34 100.0 40 .................................. ATTTGCCATTTCCTTTCTCATAAGTCTCACCTCCTTATTT 1117069 34 100.0 43 .................................. AAAGTTGCTACTTTTTCAATCATAGTTTTCCCCCTTTTTAGTG 1117146 34 100.0 38 .................................. CGCAGACTTTATGACATCAGAAAGTCTAATCTGAGAAG 1117218 34 100.0 39 .................................. CTTCTGTCCAGCCCAGCCCTAATAATTTGATATTGATTA 1117291 34 100.0 42 .................................. CCCTAAAAAATTGGGCAACTCTAAAAACTACTGAAAGAACAC 1117367 34 100.0 43 .................................. CACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1117444 34 100.0 34 .................................. ATTAACATCTGCAAAATTTATAGGAATGTTAATG 1117512 34 100.0 40 .................................. ATTTGCCATTTCCTTTCTCATAAGTCTCACCTCCTTATTT 1117586 34 100.0 43 .................................. AAAGTTGCTACTTTTTCAATCATAGTTTTCCCCCTTTTTAGTG 1117663 34 100.0 38 .................................. CGCAGACTTTATGACATCAGAAAGTCTAATCTGAGAAG 1117735 34 100.0 39 .................................. CTTCTGTCCAGCCCAGCCCTAATAATTTGATATTGATTA 1117808 34 100.0 42 .................................. CCCTAAAAAATTGGGCAACTCTAAAAACTACTGAAAGAACAC 1117884 34 100.0 43 .................................. CACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1117961 34 100.0 42 .................................. CCCTAAAAAATTGGGCAACTCTAAAAACTACTGAAAGAACAC 1118037 34 100.0 42 .................................. CACCCAGAGAAAAGAATAATCAAACAATCTTATTAAAAATTA 1118113 34 100.0 41 .................................. CATTAAAGATACAGCCTTCATCACTCCATAACCTTCTATAG 1118188 34 100.0 42 .................................. CAATATTTTCTACTTTTTCAATTTTGGTATCCCATACTTTAG 1118264 34 100.0 42 .................................. CATATGTTTTTGCGGTGATTATTCCTTGACCTACTGATTTCA 1118340 34 97.1 41 ...................C.............. CGTATAAATTTCTTTGCTTCTTCAAGTTGATAGTTTAAATC 1118415 34 97.1 0 ...................C.............. | ========== ====== ====== ====== ================================== ============================================= ================== 42 34 99.9 41 GTTGAAACCTGCCCTGGATTAAAAGGGATTGCGA # Left flank : AAAAAATAAGAGAAAAGGTTAGGAAAAATTTGAAAAAGCTTGGAGTGCATGCTCAATGGAGTGTATTTGAGAGTTTAGAAAGTTATGAAAACTTAATAAAAGTTTTGCTTGAGGAAGAGGGTGAGAAATATAGAGTAGCTATTTTTAAGATTAATCCAAAAGGAGAAATAAGAAAAATTGGTCAAAATTGGGAAAAGATTAAATTTATTTTTTAAAAATTTTTACTATAATAAATTTTAATAGCAAATTGTTCTTTGAAAATTGAATAATTTAGAAGGGCAGGTTTTTTATTGGAGCATTAATTTTAAACTTTTTCTCCTTTCCATAAGTAAAAATCATTAAAGCTTTAAAGAAGCAAATTTTAAAAAAGAAATATTGAGATTCAGTTATCCCTGATCTTGTAGCTCAAAATAAATGTGTTCTCCAAGGGTAAATTTTAAAAAATTTAATTTGTTTTAATATTCACAAATAAGATTTTATAAGATTTACATAGTGTTAGG # Right flank : ACTTGGGGATCAAAAAAGATTGCGGCCGTCTACTTGCAAAGTAAGACCAAACAACCTTCTTTGGTTTCTGATTTAAAAATTTTTAAAAATTGGTTATAGAAATTTCTTTAAATATTCAATCCATTCATTGGGGAGACTGTTTTCAATGGCTCCTTTGAGAATGGTTTCTATATAGGATCTCGGTGGTTTCCCTCTTTCCTTTGGTTCTGGTCTCACATAAGCTATAGCTTTTATTTTTTTTACCCATCTCTGGTAGAAAAACTCCAAATTCCTTTCTTGTGTAACTAAAAGGATAGCCTTCATACTTATCTAAACAATTAATAAGATCATCAAAGGAGTTAAACTTAAATACTACTCCCCAAACCCTTTCGTTTGGATTTTCAACCATATTAGCAGTGGGACCACCCCTCGTACTTGAATATCCATCAAATACAAGTTCATAGCCTTCAACATACCCAATACCAATCTTTTTCCAGAGGTTGCCACAACGCTCCTTCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCTGCCCTGGATTAAAAGGGATTGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 1225130-1221572 **** Predicted by CRISPRDetect 2.4 *** >NC_015682.1 Thermodesulfobacterium geofontis OPF15, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1225129 29 96.6 35 ...................A......... CTTCTTGAATAGCTGAACCTAAAAAGTTTTAACAC T [1225120] 1225064 29 100.0 36 ............................. ACTTATTATGACTCTTCTTCTAATATTGTGATCACT 1224999 29 100.0 37 ............................. AAATTAACTATTAGCTAGCTAAAGCAAACTCTAAAGT 1224933 29 100.0 36 ............................. TTTTAATTCTCACTGGTGTGCTTACTCTGAAAAAAA 1224868 29 100.0 36 ............................. GTAGCTGAGGGTAAGGTGATAGAAGTAGATGTAGAT 1224803 29 100.0 36 ............................. AAAAACACAGTCAAAAAATTGACAAATGAAAATAGA 1224738 29 100.0 36 ............................. AATACACCCATCACTCCTTATCCACTCTTCTAAGAA 1224673 29 100.0 37 ............................. AGTGGAGGTAAGAGATAAAGGATGGAAGTTGTATAAG 1224607 29 100.0 36 ............................. AATCTATGTTTACAAGATTTTTTGAGGTCTGGTTAA 1224542 29 100.0 37 ............................. GAACTGAAAGCGGAGTAAAAAGAGGCAAAAAGTCTTG 1224476 29 100.0 36 ............................. GTGGAACTCTCTCCCTTATAAGAGAAGGAAATTGTA 1224411 29 100.0 36 ............................. TTTTTAGAAGAGTTTTTAGAATGTTTTGCTATATAT 1224346 29 100.0 35 ............................. TTTTGTCTCTAAAAGTTGCTATAACTCGGGGAAAT 1224282 29 100.0 38 ............................. ACGTTAGTAGTGCACGGAATAGAAATGATATAAAAGAA 1224215 29 100.0 38 ............................. GGGGCAAGAATTTGGTTGATTTTAAGAAGGCTATGAAG 1224148 29 100.0 37 ............................. AAAAACAAAATCCCCGTTTTCTGTTAAAGCAATCATT 1224082 29 100.0 37 ............................. GTGAGAAGAGCTAGTTCGTTTTCACTTATCTCCTCGG 1224016 29 100.0 36 ............................. GGGGTTACATTTCTTTTTGAAAAAGAGATTACCTGA 1223951 29 100.0 36 ............................. CAGTTCAGTTTCCTGTCTGGTTTAATTTAGAAGTAG 1223886 29 100.0 36 ............................. AATGTCAAACTTCAGCCGGTAGTGGAGCTAGTATTT 1223821 29 100.0 37 ............................. CTTTAAATCGTTTTTTTGAAATGCCACGATACTGGAG 1223755 29 100.0 36 ............................. TTGAACAGAAAAAAGAACAGACACAGACAGAACCAC 1223690 29 100.0 36 ............................. TGGAGGAGGCGATTGTGAGAACTCCTGAGTGGCAGG 1223625 29 100.0 37 ............................. CATAATACGCAAACGCCTCAAAATGCTGTGCACTATA 1223559 29 100.0 36 ............................. CTTTGCCCTCCTCCTATACTCTTTCTTTACTTCCTC 1223494 29 100.0 36 ............................. AAATTTCTTCTCTTCATCATAACTCTTAACCCCTTC 1223429 29 100.0 36 ............................. GAGTTAAGAAGATATAACAAGAAAAAATTGCACTAC 1223364 29 100.0 36 ............................. AAGATACGAAAGAGCATTTATAACATCCCACGCCCT 1223299 29 100.0 36 ............................. TTGCTTATTTTGGACGAGGTATTTGTGCCGTTTGAT 1223234 29 100.0 36 ............................. GCCTCCCATTCACATATACATTAGAACTGCCAGCAC 1223169 29 100.0 35 ............................. CTATTTGGCGTAGGATTTGAAGGTGTGAGTGAGAT 1223105 29 100.0 36 ............................. CACATGAACAGAAAAAAGAAAAAAAAGAAAGGAGAT 1223040 29 100.0 36 ............................. AGCATCAACAATAGAAACAGAAAGTTGAGAAGAAGT 1222975 29 100.0 36 ............................. TGCTTCGAATGATATATTACTACAAAAATCTGCAAA 1222910 29 100.0 37 ............................. TTCGGAAGATACTGCAAGAATGATAGCGGCTACGTCT 1222844 29 100.0 36 ............................. GTCTCTCATGATTAACGTATAGTTTCTGTATCTATT 1222779 29 100.0 36 ............................. GGATGGGTGATGTGAGAATGTGAGAAATTTCACGAG 1222714 29 100.0 38 ............................. AAATATCCTCATTTGAAAAATTTTATAAGCAAATACAA 1222647 29 100.0 37 ............................. TCCAGTCAATTAATGAATTTTGTTGAAGATCTAAGGC 1222581 29 100.0 37 ............................. TGGTTGGGGCTTGGTGTATTTCAGGAGATGAGGGAGA 1222515 29 100.0 36 ............................. GGTAGGAGATGTAGGAAGGATAGTTGATGATATAAA 1222450 29 100.0 35 ............................. CCAACAAAAGTCCAAAAATAATCCATATCAAAATC 1222386 29 100.0 37 ............................. ACTGAAAGTAAGACGGTTGAATTTGAGCAAGGAATAG 1222320 29 100.0 38 ............................. GAAGGTATAGAATAAAAAATGCTGGGTCATTAAATAAT 1222253 29 100.0 39 ............................. GTATCAAGCTTCAATTCCTCACCTGCAGATAAAACAACG 1222185 29 100.0 36 ............................. GCCTCCCATTCACATATACATTAGAACTGCCAGCAC 1222120 29 100.0 36 ............................. TTGCTTAGAATGGTGTATTATTATAAAAATCTTCAG 1222055 29 100.0 35 ............................. AGTATGCCTATTATATATGTTCTTGAAAATGAAGA 1221991 29 100.0 38 ............................. GATTTTAGAGATGTAGGAAGTGTTGTTTTTGCAGGTGG 1221924 29 100.0 36 ............................. TCATCCATAAATAACAACACAGTCCCCCAAAAACAT 1221859 29 100.0 36 ............................. TTCCTGTGAAAGTTCTTTTAAAGGTTCAAGTTTTAA 1221794 29 100.0 36 ............................. ACTTTTACTTTTCGGTATCACCTTCACCCTTTTTGC 1221729 29 100.0 35 ............................. CCATTTACCTCTTTTTTGTTTTGTTTTCTATCAAA 1221665 29 100.0 36 ............................. TGGGTTGAAAGTAGTTATTATGCAGGACCTGTTTGT 1221600 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 55 29 99.9 36 GTTTAAATTCCTCTTTGGTGGATTGAAAC # Left flank : CCACCACCAGTATTCTAAAGGTGGCTCATAATCATCGGTTATAACAGGAGGATAAGGCTTTTCTTTTAAAGCATATTGAATTAGCTTTTTATCTGCTTCTATAACTTTTGGGTGGTTGTCAAGACCTCTTTTATGAATTTCAGTGCGATAGGGTAAGGTTGCTTCTGCTGAATAATCATCAAAAAAAGTTTCTATAGCTTCTTGAGATGCTAAACTAAATGCCCATTCTTCAATTAATTCTTCATCAGAGAACCTTGATAAGTCCATCTCTTTTCCTCTCTTTTAAAAAGGTTTCAAATGGCTTATTCAACTTAAAATAAGTTTTTATTGCAAGATCATCATCACTTGATATTACTACTTTATCACCTTTTCGAAAAATGTAAAAGGTTTTATCTTTAACCCTTTCAATGTATACTTCATCCGGCTTTTTTATCACCTCATAGGCTGAGTGATAATATTCTTTAGGGGTTTTAAAACCAAATTCATGCCCGTGTTTTAAA # Right flank : CGCATTTGATTATAAGAAATATCAAGCATTTTCTAAATGAACCTATCAAAATTTTGCGTCAAAGCTCAACCTTTTAAATAAGTTCAAAAACCCTATTTGTAAAGTTACCCGCCAATATTCACTTTTCAAAGATCTATAAAATATTAGCTGTTAGGTCTTCGACATCGGTTAAAATATGCCTTTCAAAATTAACTCCGTCAGGAAATGTATAAATTATTACACTGTCTCTTTTTTTGTCCACCACATTAAGTATTTCATTTTCAAGTCTTTTTAGCTTGCCATAAGTCAAGTCACCTTCAAAAACTGATTTTTGAATATGATGAAGATATTTTCTTGCTATTTTCATTACCTTTATTAATCTTTTTTGATCTTCCTTTTCTATCAAAGATATATCATAGATCAATATGATTTTCATACTACCACCAAACCTTTAACGGATTATAATGTTTTTCACCTAAGAAATGTTTTACAAGTTTATAAAGTTCTAATTTTATTAGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTCCTCTTTGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //