Array 1 267138-268246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXJ010000001.1 Proteus terrae subsp. cibarius strain JX19 NODE_1_length_417387_cov_165.358249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 267138 28 100.0 32 ............................ CATATATCGTCATGGGCTAACGCTATTCAAGC 267198 28 100.0 32 ............................ TCGAGCTTCTTTGCGTAAGTTCGCCATACATC 267258 28 100.0 32 ............................ AGAAAAAGTAAATCAGATGCTAGAGCATATTA 267318 28 100.0 32 ............................ TTAATGACGAAATAACATTATCTCTTCAGTGG 267378 28 100.0 32 ............................ TTACCAACTGCGTCCAATACACCACCAGTGGG 267438 28 100.0 32 ............................ TAGCGAAAGCATTTAATACTGTTAATCCCACT 267498 28 100.0 32 ............................ TTTAAATGAGGGCACATAGCTATCAATGCTAT 267558 28 100.0 32 ............................ ATTACCGCACACCGCCTAAATGCTTCGGATCA 267618 28 100.0 32 ............................ TACGAGTTCTTTCTTTTCTTCTTGAGTTAAAG 267678 28 100.0 32 ............................ TCCAACTCACTAACCATTCGACTCATATACCA 267738 28 100.0 32 ............................ TAGCCCCGTAATCGCCAGTGGAGAAATACCGG 267798 28 100.0 32 ............................ AGTATTAAAGGGAAGCTGATTTTGAGCTTTCC 267858 28 100.0 32 ............................ ATTAACGGGGGTGTGGTGATAATGTTCTGCTC 267918 28 100.0 32 ............................ TTGTTGCTCAAGCTCACCATTCAGCAAAACCA 267978 28 100.0 32 ............................ CATCCCGAAAACACTAATGATGAAACATGTGT 268038 28 100.0 32 ............................ TGTGACAGAAATCTCTATCACATGGGCGCCAC 268098 28 96.4 32 ..........G................. AACAGCCCACCATATTCACGTCCAAAGTGAAT 268158 28 96.4 32 ..........G................. TATTGCAGTGAACACAGCCAGCATGAATATTG 268218 28 89.3 0 .......A.........T..T....... | G [268244] ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.1 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GCAAGGGCGTGCAATGCAATGCTCCTCTCTTATTCACGTTATTATTGATTCAACGGAAAATACGATTAGTCGAGTGAGAGTGGGCGGAAAAGCGACAATGATAGGTTCGAAGATTATTACTCTTTAAATTACTTGCGGTATTTTATATCAAGTTATTCCTAATAGGCCCCAGTGTAAAAACTAGGGCCTTTGTATTTTAAGTATTTATATAAAAACGACGTATTTATTGCTTCTTAAAATTTTATTATTGTTCGCTATGTGATTTGATTTTTCATTAAATAGATTTTATGGCAGAAAATGCGTAGGTGGTTTTTGTGAAAGTACCCGGAACGTTGAACTTTGGTTTTGACTTAAGTATATTCAATAATTAACCCTTTTATTTTGTTCTTTAAAAACGATAACAAAAACAGATGGTTACATTTTGCTGTTTTAAGCAAGGTAAAAATAGCTAAATGTTGCTAACACCTTGCTGTATCTTGTTTTTCTATGACAATACTATT # Right flank : ATTTATTTAATATATTTAAATCTTTTTCAGTAGTTATTAAAGCGTGTTTCACTTGTATATTCCTTTCTTATTGTATTTAGAAATAACTATTTGGCATTTTTTATAATTAAATTTTCCTTAATAGTTCACATATATACAATTTGCTTATGTCATGCTTATTCCTTAATTGGTATTGTTTGGAAGTGACTAAAAGAGGCTAAAGTAATGGAAGATTTATCCCCCTCCGATTTGAAAACCATTCTTCATTCTAAAAGAGCCAATATGTATTACTTGGAATACTGCCGAGTGATGCAAAAAGATGGTCGTGTTTTATATCTTACAGAGTCGAAGAAAGAGAATCTCTACTTCAATATCCCTATTGCTAACACTACCGTCTTATTACTTGGTAATGGCACATCAATTACTCAAGCCGCAATGCGTATGCTTTCACAAGCTGGTGTATTGGTAGGTTTTTGTGGTGGAGGTGGCACACCTCTACACATGGCGACTGAGGTAGAGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 276960-278666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXJ010000001.1 Proteus terrae subsp. cibarius strain JX19 NODE_1_length_417387_cov_165.358249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 276960 28 100.0 32 ............................ AATTGAAGTACCGCGAGGGAAATCTTTAACCA 277020 28 100.0 32 ............................ TGAATCAGAACAAGCTAAGTGGGCTATTAGCT 277080 28 100.0 32 ............................ TAACATTAACCCTATAAGGTGATCTAGTTTTT 277140 28 100.0 32 ............................ TAAATTCGCTCGTGCTTGCGACAGACACATTA 277200 28 100.0 32 ............................ AGAAAGGGTTATCACTTGCCCTAGCATGTCGC 277260 28 100.0 31 ............................ ACAGCAGGCCAGAAAGGATTATCACTTGCTC 277319 28 100.0 32 ............................ ACCTCATAACCTAGGAATGTATGCTTAAGCAT 277379 28 100.0 32 ............................ AGACATTCGATAATGAGCTAAGACGACAGTTT 277439 28 100.0 32 ............................ AGTGACCGACAAAATACTCATGCGTTTCTTCA 277499 28 100.0 32 ............................ CACGAAAATCGTCAACCAATTCCCATGCATCA 277559 28 100.0 32 ............................ ATTCAATATCAGGGGCTAACTCTGGATTAATA 277619 28 100.0 32 ............................ TTTCACTCCTGTATTTTTAGCTCCAGCCCCCA 277679 28 100.0 32 ............................ ACGAAGCACTTTAATACCGTAATCCCGCAGTT 277739 28 100.0 32 ............................ ATTTATCAGACATCATGCGTAATAAGCCTGAT 277799 28 100.0 32 ............................ AGGTGAAGAGCAAATTCTAGCAACGGAAGATA 277859 28 100.0 32 ............................ ATGGGGATGGTCATTTGATTCCCCGCACGTTG 277919 28 100.0 32 ............................ ACAAAAAGACGAAACCATTAAAAATAATGGCT 277979 28 100.0 32 ............................ CGAAACATTTGATAACCGAAAAAAAGCAATGC 278039 28 100.0 32 ............................ ATCACATGCTCTGGCGCACGTTCACGGACTTT 278099 28 100.0 32 ............................ CAACAACACAGCACCACACCGATTTTACAACT 278159 28 100.0 31 ............................ TACAGTCAGAAAGTATTTGAAGATGCTTGGT A [278184] 278219 28 100.0 32 ............................ TATATGGTGGATGAAGTAGTAAACACTATCGA 278279 28 100.0 32 ............................ AGTCAAACTCATAACTAATTCTTTTTGTTCGT 278339 28 96.4 32 ..T......................... TACCACCAATCACCAAAACTTATTCAGAGGAG 278399 28 96.4 32 ..T......................... TATTACAAATCCCCATTCATAAAGTGAGAGAC 278459 28 96.4 32 ..T......................... TGAGAAATCAACATTCCTTCATCGTCATTGCA 278519 28 96.4 32 ..T......................... TATGAGTGAATATCGTCCACTGGCAACCAAAA 278579 28 92.9 32 ..T..............T.......... CATAATCAAATCACCGAAAATAATAAGGTGAT 278639 28 89.3 0 ..T......T.......T.......... | ========== ====== ====== ====== ============================ ================================ ================== 29 28 98.9 32 GTCCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGTGGGAGAATATGCCTGTTTTACGCGCCACAATCCTAAATCTCAACAGCGTCGCTTAAAGCAATTGGAACGTCGAACTTCTTACTTAGCACAAAAACATGGTGTTGATGAAGATACTATGCGAGCGGAACTTTTGGCATCAATTGAGCAAAAATCGGGTGAAAGTAAATTGCCATATATTAATGTGCAAAGTTTATCAACATCTACTGAACCTCAGTTACGTCATAAGTTTATGCTTTTTATTCAATGCAATAAGTCGAACTCGCAATTGAGGAATAGCAACACATTTTCTTGTTATGGGTTGAGCCAAAAAGAAAAAGGGAAGCAGACTTTTGTACCTTGGTTTTAACCTAAATATTCAATAGCAAAACCCTTTATTTTTCGCTCTTTAAAAACTTCAGTAAAAACAACAAGCTATATGCGGGCGTTTTTAATAAGGTAAGAATGGTTAAATCTTACTAACGTCTTGCTGGAGCTTGTTTTTTTGTGATAAAGCTATT # Right flank : ATATAGAGGAGAGATTGTTTTTCAGGGTTAAGGGCTCACTGCATCCCGGATGTTTTATTTCCGTTCGTGTACAGATGCTAGAGCAATCCATTTATAACGTGAGAATGCGTGAGATGGAAAAGTTTCTTTTGGTACTAAAAAACTATAGAGAAAATAAAATTATTAAATATGGGGATAAGGCAAGGATATTTATTTGGTATATGGAAAATATACAGAAAAGAAACGCCACTATAGAAATAGCACTGCCTTTTTTAATTCAAGATTTTCGTAGTTATAGTTTAGGGAGTGATCTTTCAGATGATGAGATAAAAAGTACAATAAGGAAAGTTAAAGAGTATCTTATTCAAGCTGAAAATAGGTATAAAAAAACTAAAGGGTATGATAAGAGTTAATCAGAACACCAATAAGACACCAGAAATTGATAACTGATTGAATATATAATTCGATCACTGGCACTACTTTATTTTTTCAATAAATTAGCCATTTCTGACATTCGTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //