Array 1 24658-20748 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIH01000012.1 Halostella salina strain CBA1114 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 24657 37 100.0 36 ..................................... ACGCTTTTGTGCGCCAGCTCCGGGTAGTCCTGCAGC 24584 37 100.0 36 ..................................... AAACAGTCCGGCATCGGCTCGTCGACAAAACGGCAG 24511 37 100.0 37 ..................................... TGTACCACGTCGTCGAAGCCGTCCCACGACGTATTAC 24437 37 100.0 36 ..................................... AAGTCACCATCTTCGGCGGGATCGGACACGTCAACC 24364 37 100.0 32 ..................................... CACGCGACGCGGCGCGTGTGTGTATCTCGCGC 24295 37 100.0 37 ..................................... GACACGCTTGAGGTGCGGGGACGCGACGGGAGCGTGA 24221 37 100.0 37 ..................................... AGACGATCGAATCCGGGGACCTCAAGCGGACCGTCCA 24147 37 100.0 37 ..................................... ACAGTTCGGCATTGAGGCCGATCGGGAGGTCTTCCAG 24073 37 100.0 39 ..................................... GGTTCGTGTGGCGAATATCCACAGTGCGAATACTGACGC 23997 37 100.0 35 ..................................... AGGTTGGCGTCGCTCTGGATGGCGCACGCAGGCTC 23925 37 100.0 35 ..................................... CCGTCGCTGTACTGCGGGAACAGGTGGACCCAGAG 23853 37 100.0 36 ..................................... ATGACGGACGGCGGCCAACCGACCGACGAGGTATCC 23780 37 100.0 37 ..................................... AAACATGAGTCAGAGCTACGACGGACCGACCGAAATG 23706 37 100.0 34 ..................................... GGCGGTGAAAAGCGGGGCGTGCATGGTCTGGGAC 23635 37 100.0 38 ..................................... TGTATGAACGATCGTCCCACGCGGACACGTAACGCCAC 23560 37 100.0 38 ..................................... AGCCGGAGTCGTCAGTCTTCGATGTCGGAGAGGTCCAG 23485 37 100.0 36 ..................................... AATCAATCAAGCCCATGACTGACGAAGAAGAACTGA 23412 37 100.0 36 ..................................... CTCCCGAGAGAGTGAGAGCACTATGAGTTCGCAATC 23339 37 100.0 34 ..................................... GGTTCCGTTCTCCTGATTGTCTCTGGGGTCGCTG 23268 37 100.0 37 ..................................... CCAGCTGCGGCATGTCCACTGACTCGTCCATGCCAAT 23194 37 100.0 36 ..................................... GGACAACGGCGGCGGGGATCCGGCCGAGATAGCACG 23121 37 100.0 38 ..................................... CGGCGGTGGTGGTGGACTGTACGGCGGCGGTGGCGGCG 23046 37 100.0 37 ..................................... ACCGCATCGGGCGCGCTCCGGGCGAGCGTCGCGGCGC 22972 37 100.0 35 ..................................... TCGATTGCCCGAGCGTTAACCAGCTGGCGGATGTT 22900 37 100.0 36 ..................................... CGCTCGAACCGTCCCGGCTCCCTGCCGGGGCGTTCA 22827 37 100.0 36 ..................................... TGTTCCATATACCACCCGTCGCTGCCGTCGTACAGG 22754 37 100.0 34 ..................................... AAGAACCACGCCCAGAAAGCCCAGATGACGCCCG 22683 37 100.0 38 ..................................... GACGGCGACGGCGCGATCGGCGACCCCGACAGCGCCAA 22608 37 100.0 36 ..................................... ACGGTCGCGCCGTCGGCGTTGGTCTCGACGAGCCAT 22535 37 100.0 37 ..................................... TATGTCGACTGGAACGTGGACGCGTGGCCGGAGGACG 22461 37 100.0 38 ..................................... TTCATCTTCCCGCGGGGCGACGGCACCGACGTGTACGT 22386 37 97.3 34 .............A....................... TCCACCATCGACATCATCCCCGCATGGCTGGCGG 22315 37 100.0 36 ..................................... TCGTACATTTGCCACGGGTCCGTATTCAGGTCCGAC 22242 37 100.0 33 ..................................... TCGTATGCCGAAAAATACCTCCGGCGCGCCTAC 22172 37 100.0 36 ..................................... GCGGCGTGCATATGGCGACGGCCGGCACGCCCGCGG 22099 37 100.0 37 ..................................... CCCGGCTCGGGGCTGTCCACGGCCTCGATCTCGACGA 22025 37 100.0 36 ..................................... GACTTGCGACACCCACCACCCCCACGACGGGGAGTG 21952 37 100.0 36 ..................................... TTGGCGCACCAGCCCGGGGAGTTTCTCCCGAGCGCG 21879 37 100.0 36 ..................................... TCGTCGGGGATCGCCTCGTCGAACACGTCGGTGTAG 21806 37 100.0 36 ..................................... ATGCTGCGTATATACCGCAGTCTGCGCTGTCCCAGC 21733 37 100.0 38 ..................................... TGCCACGACGCCCCGCCTTTGATGGCCGCCCAGATCAT 21658 37 100.0 36 ..................................... TTATGCAACCGCCGGCACGTACTGCTTTCGTGATAG 21585 37 100.0 37 ..................................... ACGGCGGCTCTGAACCGTCTAAACATCGTTGCGGCAA 21511 37 91.9 38 ..............C......C.A............. AACATGGCCTGCAAAGGCAAGACCTTCAGCCCCCTCGC 21436 37 91.9 37 ..............C......C.A............. CGATCCTCGGCACGGCCGGCTGGTTCTTCTGGCCGCT 21362 37 94.6 33 ..............C......C............... GAAATCTTCAACCGGGATGCACAGCCTGAGAAT 21292 37 89.2 37 ..............C......C.A.A........... TCCCAAGTGCGGGTCGCCCGACTGGTTCGAACCCGCG 21218 37 83.8 34 ..............T......C.TTA..A........ AAGAACCCCGGGTATCAGGGTCGGATGTTAGCGC 21147 37 86.5 36 .C............C......C.A.A........... GAGACGGAGATGACACTCCGGTGCCCGGGGTATGAT 21074 37 86.5 36 A.............C......ACT............. AGTTGGCTGTAGTCGCTCCGGCCGTCGCCGCCAGCG 21001 37 78.4 36 ...T...G.CT...C......ACT............. ATGTCGAGATCGAGGAGCTGCCAGTCCGATGTCCCC 20928 37 83.8 36 ...TT.........C......C.A.A........... AGCACACGCGAGATTCCCGAAGGCATCCCGCTCGTG 20855 37 78.4 34 ...A......G...C......C.ATA.....C..... TGGGATCCTGCGTGGGCGCTGTTTTCGGCGGTGT 20784 37 91.9 0 .......C.............C..............A | ========== ====== ====== ====== ===================================== ======================================= ================== 54 37 97.3 36 GTCGCAGAAGCCAGAAAAGCCGAGACGGCATTGAAAC # Left flank : ATCGTCAATCTTGGTGGCGGAGCCCGCGATGTGCTCCTTCCGTTGACCATCGCAACGCTGGTTCACCGGGACTGTGTCGATACAGTCCTCTTTTTCAGCGACCTGGATCGCTCGTTCGAGGAGTGGTCGCTACCGAATATCACGGCAAGTCCACCGGAGAAATCGCTGGAAACGTTGCGCCTTCTCGCAACTGTTGACCAGCCTGTTTCGATTTCCGAGTTGGCAGATGAGAGTTCAGTGGCCAAGAGCACTGTTGGGCGACACGTCGACCAGTTGGCCGTGGTTGATGCCGTCGACACCGAACATACCGGGAAGACCAAGCTCGTAGAGCTGACGCTCACCGGTGAGCTATTGCTACAGCAAGTGGAATAATCGTCCCAGCCCGGCCAGTCTTCGTGGACCTTTTTAGTATCTCTGTACAGCCCCGGTCGACGAAACGTGGGTACTGAGCCAAGCCAGTAACAAGCTTTATTGCCTCTATCCCGTGATTTTCACCCCCT # Right flank : ATGGTGTGATCGCCTGTCGGCCGGGTATATCGTGATATGTTGTGGTGGCCCATGAACTCACTCAACCACTGTTCTGGTTCACGTTAACCAACACAGTCCACCAATCCCGGCTTCTGTTGGTTAAGACTGCCACTGGAGGGGCTGTCTGAACCCTTCAACCACTGCCAAAACGGGTGCGTGATATCACGCCTATCTTCAGTAGAATCGAACTGTTACTAATTTGATTTGGAGAACGTCTCGATTTCACCGATAGCTGAGTCGTCCGATGACGATGGCCGCTGTGACCCAGCGTAATACTTTTGCACTATTGGACACCATGAGTGTCCATGAACACCAAGAGTGACCAACAAACTATACTCAACGTGCCATTCCCCTTCGGGGAAGAGCAAGTATTCCGCTACCGGGCAATGGAGGACATTCTCGTGTTGCTGATTCGAAATCCATTCAGGGAGCTCACCGTCCGACAACTCCGAGAACTGACCGACAACGGAACGAAGACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAAGCCAGAAAAGCCGAGACGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [47-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 34377-36221 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIH01000012.1 Halostella salina strain CBA1114 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 34377 37 100.0 34 ..................................... TCGTCGGCGGTCTCACTCATCGCTACCACCCAGC 34448 37 100.0 36 ..................................... AGCATCGCCTCGGGCATCCCCCCAGTCCACCGGTTG 34521 37 100.0 33 ..................................... ACAGCGACACCGGGCTACGAGGCGTTTGAGAGC 34591 37 100.0 36 ..................................... CGGGCGGCGGCCCCGTCCCACGGCATCAGCGGCCCC 34664 37 100.0 36 ..................................... GAGGACCTCGTCGTCGCGAGCGTCGCCGGGCTCGAG 34737 37 100.0 36 ..................................... TCCATCGGACCCGCGAAAGTCGGTCGGATACCGTTT 34810 37 100.0 34 ..................................... TATTAACATGGGAGTGCTCGACTGGCCCGAGAAG 34881 37 100.0 35 ..................................... AACCCGGCGGGCGACTACAACTTTCGCGGTGCGGC 34953 37 100.0 35 ..................................... GGAACTGTCGATCCGCGGCAGCGACAGCGCCACCC 35025 37 100.0 36 ..................................... GGTTGCATATCGCCAGCATTCGGTCGTTGCCGTCCG 35098 37 100.0 37 ..................................... TCGTAAGCCCGGGGAGAGCAACCCCGTAAACACGGTA 35172 37 100.0 35 ..................................... CGCCATGGATCACCCTCAATCGCGGTACGGGAGTG 35244 37 100.0 35 ..................................... CCCGCTCGATGACTGCGAGAAGCATTCGGATTCGA 35316 37 100.0 34 ..................................... TGGGTCGGACGCGAGACGGACGACGGCCGTTCGC 35387 37 100.0 37 ..................................... AGGTAGTCGTAGCAGACCTTCACGGCGTGCTGACGGC 35461 37 100.0 36 ..................................... CGGGCAACACCTCGGGCCGGCCTTCCACGTCTTCTT 35534 37 100.0 35 ..................................... TCTAGGAGTTGATCCTCGTCTAGAAACACTCATCC 35606 37 100.0 35 ..................................... TAGTCGTGGGGCCGGTTCTGGTTGACCGGCGGGAC 35678 37 100.0 36 ..................................... GATTCGATTCGTGCGCCAGTCGAAGATTGTGGCGTT 35751 37 100.0 37 ..................................... ACGGACACGGCGGTCGTCAGCGTTGACGGCGCGGCGT 35825 37 100.0 38 ..................................... TAGGTTGTCTTAGGCATCGTTCTGAAGTTGCTGGTAGT 35900 37 100.0 36 ..................................... TTTCGAGTTTTGTCGCTGTTATCAACTGAGTGGTTT 35973 37 100.0 33 ..................................... TCGAAACGCCTCGTATCCCCGACCCGGAGGCCC 36043 37 100.0 34 ..................................... ATTGTCGTCTCGCCGGGCATGACCGTCTCCTGCT 36114 37 100.0 34 ..................................... CGGAGTATATCGCCCCCCAGCAAGGCGGAAAGAC 36185 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.9 35 GTCGCAGGAGTCAGCAAAGCCACTACGGCATTGAAAC # Left flank : TCGACTACTCCGTGTCTCGACGGAAGGCAATCCGGCAGCAGGTGATCCTACTCCGAAAAGCGATAACAGACGAGATGGATAGCTACCACGCGCTTACTTTCAGCCGATAACATGCGTCTCGCCATTGCCTACGACATCAGTGACGATTCGAATCGACGACGAGTGTATCGAACTCTTCAGCGATACGGTGCCTGGAAACAGTATAGTGTTTTCGAGCTAGATGTCTCCAAAACTGACCGTGTAGAGCTAGAGGACGAACTCAAGAGTCACATCGACCCAACCGACGGAGATAGAATCCGAATCTACCGTCTCTGTGAGTCCTGTGTAGACGACACTACGGACATTGGTGCCTCTCAACCAGATGAACAGTCGAACGTGATCTGAAGACCTCCTTCGTCGACCTTTTTAGTATCTCTGTACGGCCCCGGTCGACGAAGAGTTACCCTTGAGCGAGTCACGTAACAAGCTTTATTGCCTCTATGGCGTGATTTTCACCCCCT # Right flank : ACCTCCAGCAGACAGTCACTTGCTGTCGCAGGCTGCAGCACCGGGAGATGGTAGTGATAGTCGATAAGCTTGTCTTGGACTAGTTGACCCTTTGTTCTCACATTCGCACCTGGTTAGTGGCTGGGATCGTTCCGGATTACCGGAGATATGTGAACTCAACAATGAGACAATTCCGCTATCTTCAGAATGAGATAGAATAGATATTTTCTGGTTGGGGATGTCTCAGTACCACTTGCTGGGAATTCGCCTGGAACTGGGAGAGTGTACCTTCTCGCTGTTCACTAGCATTCTCCAAACCCACAAAGGTACGCTGGAACGTTTTCCTGTAACCACTCACGCTTTCCATCAGCAGTGCTTCAAACGCTCAAAGGTTCGTCTGGAACCGTTCAGATGGCGGCGATAATCCTCGTCACGCACCTCGTTTCAAACCCACATGGGTGCATCTGGAAATTGTGGGGGGAGTTCCCGCCGACGATGGAGTTCAAGTTTCAAACCCACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGAGTCAGCAAAGCCACTACGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA //