Array 1 1508754-1509320 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000001.1 Streptomyces tubercidicus strain NBRC 13090 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================== ================== 1508754 29 100.0 32 ............................. AAGCCCTTGTGTTCCCGGTCCTGGTTGACTCG 1508815 29 100.0 32 ............................. GTTCCAGGGCTGGTCCTCGCGGGGGCTGCCTG 1508876 29 100.0 32 ............................. GGGTGGCAGTGCTGGCCGAGCTGGGGGTGTTT 1508937 29 93.1 38 ..............C.........A.... GGCGACGCCGTTGCCTGCCGCCGCGACCTCAACCCGCC T [1508963] 1509005 29 75.9 196 ..CT.......A.....A....C.C.G.. TGGGCCTTGGTCCGGGGACCTGTGTCCCGCACCGGGTGTCCGCCTCGGCGGTGACGGTCCTTCAGCGAGCTGGGAGGGTGCTGGCGCTGTTCACTAAGGCCAACTGGAGGTGGTGGCGGCGGTGTCGTGTATGTCGGAGTGGATGTAAGTGGTTCAAATCCGTGCTGTGCGGGTGTAATGATGCAGGTCACGAAGA 1509230 29 86.2 32 ...........AT.C..........T... TGGGTCACCACAGACGAAATCTGCGATAACGT 1509291 29 93.1 0 ...........A..C.............. | T [1509316] ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================== ================== 7 29 92.6 60 CTGCTCCCCGCGCCTGCGGGGATGGCCCC # Left flank : GACCAGGAGGCTGCTCCCCGCGGGTGCGGGGATGGCCCCTCGGACTGTGGGACCGAGAGTTGGACGGCATACTGCTCCCCGCACGCGCGGGGATGGTCCCCAGTCCGTGTTCCAGGACAAGCCCGTGGACTGCTGCTCCCCGCACTCGCAGGGATGTCCCAACGAGACGAGGGGCCCGGCCAGCGCGGCTGCGGATCTGCTCCCTCGGCGTGAGGCTGCTCCCTGTACCCGCGGGGATGGTCCCGGCAGCAGGGCCAGTCGTACGCCTGCAGATCGTTGCTCCCTGCACCCCGGGGGCGCCACCTCGGCCTTGGTCGCGAGGGCCTGCTCTCCGCGTCAGGTGTCCACCTCGGCGGTGACGGTCCTTCAGCGAGCGGGATGGTGCTGGCGCTGTTCGCGAAGACCATTTGGAGGAGGCGGTGGCGATGTCGTGTATGTCGGAGTTGATGGAAGTGGTTCAAATCCGGGCTGTGCGCATGTAACGATGCAGGTCACGAAGC # Right flank : CCCCCGGCCGCTTCGATCCTGCGGGCCGAGCGCTGCTCCCCGGGGAACGCGTGACGCTTAGTGATCTTTCCGGCGAATGCGGGGGAATCTTCGAACCTCCGCACAAGGGCTTCGATGACGGCAGACTCCTACTCGGGCAATTCCACTCAGGCACAGCTGGGTGGAACTTGGCAGTCCACCGCGCCGCTTCTCTCGGGTTTGCGCCTTGCCCCGACGGGCGCGGGCAGATCACCGCTGGTGGAGGCGGTGAAACGGCCCGAGAAACGTCCGCGACAGGTGCCGCGGACGGGCCCTGCCCGAAGTGAACCGCTAGCTCAGCCCAGTCGAGGGCTGTCCCACACTGGGTCATCTGGGGCTGGGCGGCCAGTGAGTCGACGGAGGGGCGGACCAGGCGAGGTCAGTTGCTGACGGACCTGTTCATTGAAAGCGAGACGAGTGGCTTCGACCCTTTCTCGCAGCGCAAACCAGTTGTCAGGTGTACTCGGCCCGCGCTTCAGTTC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-2.95, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1519719-1520461 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000001.1 Streptomyces tubercidicus strain NBRC 13090 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 1519719 29 100.0 32 ............................. CACCTGCCCGCACGACCTTCGTGACGCCCTCG 1519780 29 100.0 32 ............................. GATCCAGGTGTCGTTCAGCGATGCGATGTAGT 1519841 29 100.0 32 ............................. CTGCTGGGCAGATTCCTCGTCACGCCGATCTT 1519902 29 93.1 32 ...........T.C............... TCGCCGTCCTGCTCTGCGCCGTCGGCGTCACC 1519963 29 89.7 32 ...........A.C.T............. ACCTTCGACGGCCGGTACATCAAGCCCGGAGT 1520024 27 89.7 134 .........A......-........-... TGCCTCCGCCTCCACCGTCCGATGATGAAACGTCTGCTCTCCGCACCAAGACTGGCACGCTGCGCTGGCTAGCCGTTCTGCTCCCCGCGTGCGGGATGGCCCAGGTTCCCGAGGGTGCCGAGTGCCGACGCCAG G [1520032] 1520186 29 82.8 32 .......A...G.CT..........A... TCGTGGCGCGACATGTACGGGTTCGGCTTGCT 1520247 29 93.1 32 .........C.A................. GAGCAGCCCAACTGCCAGTGGCTGCAACACAG 1520308 29 89.7 32 ............A...........AC... TGGAACTTCGACGTGAAGCTGTGTGCCAAGAG 1520369 29 93.1 32 ...........G.............C... GCGTTGAGGATGGTGCGGTCGTCGGCGTCGTT CG [1520384] 1520432 28 86.2 0 ................-.....A.TG... | AT [1520443] ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 11 29 92.5 42 CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : ATCGGCCAGGGGAACATCCAAGGCATCGGAGATCTGACGCAGGGCACCCAGGCCGTTGACCGGGATGACATCCCGCTCGACCTGAGACACCCAACTCTCCGACCGGTCGATCATCGCAGCCAGGTCCCGTTGCGGCCATCCCTTGCGCCTGCGCGCCTTGACGATCGTCTTACCGAGTGTCAGTCCGCTCCCCGCCACTGGGCACGCCCCCGAAGTCCCGTATCCGCATCGAGTGAGCACGCAACGTTACTGGCGGAGGAGGGCCTTCTGCAGGGGTAAGGCAGCCAAAACAGGGCCATATGCCGACTAGGCCCGCCGGGCTACGCTGGCAACGCGTGCTGCTCCCCCGCCCTGGCCTGGCGCCGGGCGCCGGTTGAGCCGCCGGCCTGCTCCCCGCACGACGACGCCAACGTGATGCAAATGTCGCAACGGTCGGATCGGGGTTGGTGGAAGTGGTTCAGAACCGTGCTGTGCGCGTGCAACGATGCAGGTCACGAAGT # Right flank : CTGCTTGGGAGTGTGTAAGCCTGAGCGCGCTCCTGCTCGCCGAGGCCGTGGGTCGCCCGAGCCCCACGCTGGTGGGGTGTGAGAGCGTCCAACTGGACTGGCCAGAGGTGAATGTAAAGGGGCTCTTCCTCGTACGAGGAAGAGCCCCTCTGGCAGAGCGCCCGGCAGGCCTTGCACCTGCATCTCCCACCGGCTGGTGGACGTCTTTCCTTGGACCACAGACGCATGGTTCCGGCCCGAGGACCGAAGTTGCTTCATGATCATACTGCATGGCGCTCCAGCAGGGAGAATCCGCCGTACGCCCCCGCGCAGACCAGGCAACGGGTTTGCTGGTTATGGCGGATCGGTCATAACCAGCAGAAGCACTCCTAGCGCGGTGTTGCTGCGGCAGAGACGGTGGCGATGTGGGCTCGGCAGGTAGAGACCGCCTGGCACACCGGTACCCCGTCCAGAATCAGCCAGGGACCGTCCGCTTGCTCTCCTGCTCCGCACGCGCCGGA # Questionable array : NO Score: 4.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.95, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1524957-1525460 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000001.1 Streptomyces tubercidicus strain NBRC 13090 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 1524957 29 89.7 32 ..........C..C.G............. GCCATGTGGGGCGGCGCGCCGCTGTCGACTGG 1525018 29 79.3 140 ..........C..C.G.....G...C..G GCGGCGGTTGAGCCTGTCGCGGTCCGCCGGACTGCTGCCCGCGTGACGAGGCCGGCAGGGTGCAAATCCTGCAATGGCCGGAGTTGGCGAAAGCGGTTCAAATCCATGCTGTGCGCGTCTAACGATGCAGGTCGCGAAGT 1525187 29 96.6 32 ............................A ACGTCGCGGACGTGGGCGAGGTAGTGCAGTTC 1525248 29 100.0 32 ............................. AGGCCGGCGAACGCCGCGTTGTGGCAGACCAG 1525309 29 100.0 33 ............................. CCGGCCAGTGCCACCGACATGGCGCCGGCGGCG 1525371 29 86.2 32 ..........CC...G.......A..... CAGCCTTGGCAGTACGCGCACTGGTTCACCGC 1525432 29 89.7 0 ..........CC...G............. | ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 7 29 91.6 50 CTGCTCCCCGTACGCACGGGGATGGTCCC # Left flank : GGCCGGCCTCTTGCCCCGCGATCCGGTATCCGTAGTCGGAGGAGTCCGTCTCGTGGTAGGCGCCGTCGGTCAGTAGCACGGCGGCCGATACTCCATTGAGCCCTTCCAGCAAGCCGGCCCGCAAAGCGTGAAGGAATTCTGGAGGCAGCCGTGACTTCGGTACGGCGTTTAGCAGTTCAAAGTTTCCGGCAGGGCCTGGTGGTTCGAAGTCGGCAACAATGTTGGCGTAGGAGCCGCAGCCTCCGAGGTTCAGCATGACGCGGACGGCCACGTTGGGCACGGAAGCAGGGAGGGCAGCCATCGGCATACGGTACGTAGATAGGTGGCTTGTTGACTGGCCGTTGCTTTACTTCCCCGGCTCAGTAGATCAGGAGTCGAGAGAACTTCATGGACGGATCGGCTCCCACGCTGGAGACACGCCTCATCTGCACGAAATGCCGGAGTTGGTGAAAGTGGTTCAAAACCCGGTCCTGCGCGTGCAACGATGCAGGTCACGAAGC # Right flank : CTGGACGGCCCGTTGCAGCAGCCAGTCCCGATGCGGCATAAGTCGCGAAACCCCAGAAGTGCAGCCGGCAGACCTCGGTGAAGCCATTACGTCGCCCCAACAGGGCAGACATTGCCTGATACGGCACTGAATCATCCCAGTTGCTGACGCTGCCCATGTCCTCGATCCTGTGTGCTCGGCAAGCAGGGAGGGCACATGGGGCTGGTTCTTTTCCCGGGCGACGGAGACAACAGCAGTCCGGATGTCTCCTGGTCCTACAGCGGCTTCGCCGCGTTCCGGCGGCGTCTGGCCGAGACCGAGGGGATCATCCTCTCCGAGATGTGGGGCTTCGGCGGCGAGCGCCCGTGGAGCGAGGTGTCCACCGCTCTGGAGCCACTCCTCGATCATCCGGATGACGGCGGTGACGACCTCTCGCCTGCCGAGTGCGCGTCAATGATGGTCCGACTGGGAGCGATCACCGACCAGTGGGCACGGGAGGGCAGCGACCGGTTCCTCCAGCA # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:-1.83, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTACGCACGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 664384-663744 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000003.1 Streptomyces tubercidicus strain NBRC 13090 sequence3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 664383 29 93.1 32 A..T......................... CTCGCCCGCCTTGTACAGAGCCTGCTCCGTGC 664322 29 82.8 32 G..G.......G.AT.............. TACCCCATGCGGTGGCTGCCGAAGGCCCTCGT 664261 29 79.3 32 G..G.......G.AT.........A.... GCCACGGAGGGAGCCACCGAGGCGGGGATCGC A [664233] 664199 29 96.6 32 .................A........... CTCCTTGTCGGCGATGCCCAGGTGGTCCGAAG 664138 29 96.6 32 ...............A............. GTCGCGTGGCAGTCCAGGAACCGGCCGACGCG 664077 29 100.0 32 ............................. GTCATCCTGGCGATGCCGATCATCGCGATCGC 664016 29 100.0 32 ............................. GCCTCAGCCCCCGCTTCGATGGTCTTCGCGCT 663955 29 93.1 32 .......G.C................... GCCAAGCGGCTCGTTGCCGTCACCGCCCTGGA 663894 29 100.0 32 ............................. GCGGTAGACGACGGACCGCAGCGCGGCGATCG 663833 29 100.0 32 ............................. ATCAGGCCGTACGCCAGGGCCTGGGCCTGGCT 663772 29 89.7 0 ...........G.A..........A.... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 93.7 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : TCGCCACCAGAAGCGCCGACCCCTTGGTCTCGTCTCTGGCGGTACGCAGCCCCGCTACCTGTGCGAAGGGCGCGTCCTTGCCGAAGAGGTCGAACAGGTGACGGTGACCGTCAAGGTAAGCATTGAGCTTGTCGCACTGCTCAGGAGAGAAGGCCCCGGCCTTGAACATCGCAACCCACTCAGCGGCATCCCGCGGCCGTCCCAGAGCATCCACGACGATGGGCAGCAACAACTGCCGGAAAATTGCAGGCTTCTGGGTCGGCAGTTCGACAGCGATGTCCTGGAACCGCTCGGCCCCCAGAAGGAGCCGTCGTACACCGACCTCTTCGAAGGCACCAAGCCCTCGGTGCCCCTCCCCCACAACACTGTTCGAGGAGCGTGCGGACAGCCACGCGTCGTCCAGCAAATTACACAACTAGGCTTCCCCCCATGCATCTACGCCATAAGACGCGAGAGGCATCGTTACACAGCAGCCCCCAGTCCCGTCTCCAAATGCCAAA # Right flank : TGGCGGCAGAGTGGGCTGCTCCCCACGCCCGCCGCGAGCATCGTCGCCGCTTCCACTGACGACATCATGGCCACAAACGCCCCGAGGTCTCGCCCTGCGCCCCCTGGCCGGACTCCACATCGCAGGCATCTTCCTCTGGTCAGCCCGATATTCCAAACGAAACTGCAAGCTTCTCCCACACGTACACGTGCTGTCTGCTCTCACCGGGATGGCCTCCCGGGTACCCGGTCCCACTGCCCGGAATCGGGCTCAAGGAGCACGCTTCGACGCTCGTGTCCACCGAACGATCGGGACATGTGCTGGCTGGTCGCTGAAGATCTGGAGTCGGCCGCCATGCACCGCGTCGGCCGAGAGCATGGCGGTGCTCGACGAGCCAGCCGGACGACGGCAGGCGCAGAAGTGCGCCATCATGCATGAAGGTTTCGGAGTAACGGCCGGCGTATGGCCCCCATGGCCGAGGGTTCATCGACCATGGCGAGTGCGGCAAGCGATTTGAAGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 679884-678871 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000003.1 Streptomyces tubercidicus strain NBRC 13090 sequence3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 679883 29 79.3 32 .GA.C...AT.A................. AGGTGGAACTCGACGATGTAGGTGGCGTTCGC 679822 29 89.7 32 ...........A.CC.............. GCGAGGCCGAAGGCCGTCGCACCCACGGCTTC 679761 29 89.7 32 ...............AT........C... CGCGGCCTACGGGCCCAGCCGCCCGGCTCTCA 679700 29 93.1 32 ............TG............... ACGGTCTGCTTGTCCGCGGACCAGTCGAGACC 679639 29 100.0 32 ............................. GAACCGGTCCCCTGGTGTCTGGACTACGCCTT 679578 28 93.1 33 .....................A...-... GGACGCTCTGTAGAGCCCCGGGTGCCGATCCTC 679517 29 72.4 32 C..C....T....TC..A...A...C... GACTCGGTGGCCCTGGGCGTCGTCGGCGCGTC 679456 29 69.0 32 C..C.TT.....TCC..A...A....... TCGAGATTCATGAACTACCTCTGACGGAGTTG 679395 29 79.3 32 C..C........TCC......C....... GGGCGCCACGTGACCGACGTGCCGCTGATCCG 679334 29 82.8 32 C.AC.....A..............C.... GACGGCATCTCGCCCGCCCAGCCGGGCCAGCG 679273 29 96.6 41 .......T..................... TCGCCGCCATCGTCACCGCCGGCACCGCCGGCACCGCCGTC 679203 29 82.8 32 C..C.......A.CC.............. TGGTCGATGAAGCCGCGGACCTTGACCCCACC 679142 29 79.3 31 C..C.........CCA.....C....... GCGGTACCGGCGGTGAGGGACGCCGGTTGAT 679082 29 96.6 32 .....................C....... GGCCACCTAGCCAACCCGGCCGGCATCACCAT 679021 29 89.7 32 ........T..CT................ GCCACCAGCGACGCGATCGTCTTCCCCGAACG 678960 29 96.6 32 ............T................ AGCTCGGTGGTGGTGGGGCGCCCGCCCTCGCC 678899 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 17 29 87.6 33 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GCCTCCTGGGCGGCCAGGGTCTCCTCCAGCCGGCCCAGGACGTCCTCCATGTCCCGGGCTTCGTCGAAGGCGGCCCGCATGTCGTCCAGGCTGATTCCGGCCTCGGACATCTTGCGGATCCACAGCAGGCGGATCATGTCGTCGTAGCCGTAGCGGCGGCGTCCGTCTCCGCCTCGCTCGGGCTCCGGCAGCAGACCGATCTGGTGGTAGTGGCGAAGGGCGCGCGGGGTGGTCCCGGCGAAGGCGGCGGCATCACCGATCTTGACCTCGCGGGGAGGCGTGACGGAGGGGTACATCGCAGACAGGGCCTTTCGTGCTGTGGTGCCCTCGACGACACCACATGCCGCTACGGCATATGCAACTACACACCACCCAGATCCTGACGGGCTATCGGGCGGTCCCTCGCTATTGGTGTCCCGTACCAGGACAGGCCCGGAATGGGTGGGGAGATCCGTCGAGCAGGTCTGATGGCACCCCGAGCAGGGGCTGGGGATTTTCAA # Right flank : TGGAGGGCGTCCTGTGCGACACCCCGTCAGCACCGCGACAGGTCTCCTGTTCCAGGCCGACGCGGAAGCGTTCCGGCACGCCCCGGTCCGGCTACTAGCCGTCCGCAGCCCGTGGCTGCGCGAGATGCTCGACAACCTCACCCAGCACATGCGCGCCGGCCTCTTCTAGCCAGTCGGCAGAACGCGCCGACGTCTAGCCTCTGGCCCATCCGGTGAGCGTGCTGCCGCGAGCGAACCGTGCCGGATAGTGGTGCCTCCCGAGCAGCCCTGAACAAAACCTCGCGGACTCCGGCTTTCCGGTCCGGCTCAGACAGGCAGTCCGAACATAAGAGCGGCATCCGGCATCCCATGTCCCTTAAACTGACGGTAAGTGGGGGATTCGAGACGACGAGGAGCACTGTGCGAACAGGTCGAGTCGACGCCTCAGGGACGAACCCAGTGCCGCACCACCACGAAGCTACCGACCGTGGCCCCATACCTCAGGGGCTCGCCAGGTCCGC # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [12-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 683404-681186 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000003.1 Streptomyces tubercidicus strain NBRC 13090 sequence3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 683403 29 100.0 32 ............................. TCGTGTCCACGTCGGCGGTGTCGGGGTCGATC 683342 29 100.0 30 ............................. TGGGCGGCCGCGGACTCCGGCACGGTCACC 683283 29 100.0 32 ............................. TCCTCAGTGCCAGGGGCCGGAAAGGCAAGCTG 683222 29 100.0 32 ............................. CGAGGCAGACGTCTGGCGCCGTTTCCAGACCG 683161 29 100.0 32 ............................. GTCGACCACGTCCTGGTCGGCCCTGACGGGCA 683100 29 100.0 32 ............................. GGAATGGAGCAGGTGGCTGCTCGCCGCCGGGC 683039 29 100.0 32 ............................. TGCGGACTCAGCGCATTGAGGTGCGGATTGTC 682978 29 100.0 32 ............................. GATCCGTGGGCAGCAGCGCGACGGAGGGCCGG 682917 29 100.0 32 ............................. GACTTCGAAACACGCCGCACCGCCGGAACCTA 682856 29 100.0 31 ............................. ATCACTCGCGCGACTGGCCGGGTGGCGCGCG 682796 29 100.0 32 ............................. GGGTGTGAGGTCCCGGTCCCCGAGTGCGGTTC 682735 29 100.0 32 ............................. CACTGTCGTGCTTTCCATTTTGAAGGTACGCC 682674 29 96.6 32 ............................T TTCTCCCGGCTGCGCCCGGAGACCCAGGTAGG 682613 29 82.8 32 C..C.................G..CC... AACCAGGACACGGACTGATGGGCGACCCCCAC 682552 29 79.3 34 C..C.A.......T......A....C... TTGGTAGGGGACCTGGGTTGCACGTTCCCCGCTT 682489 29 96.6 32 ...........A................. CGGCCGCGCTGCCGCCATGGCTGCTACCTCGC 682428 29 96.6 32 .....T....................... CAGCAAGTTCCTCATGCTGGCCGAGGTCGGGT 682367 29 82.8 32 C..C.......A.CC.............. CTGCCGGATCTGCTGGGGCGTCCACCCCTCCA 682306 29 100.0 32 ............................. CTCGGCGACTCGAGGGCGGCGAACGCTGCTCT 682245 29 93.1 32 ........G...............A.... GTGCCCTCGACGAGTTCGTACAGGGCCTGGTC 682184 29 96.6 31 ............................T GGAACTTCTGGTTGCCCTCCCCCATGCCAGC 682124 29 100.0 32 ............................. CCGGCGACGGAGTTCACGACCATGGCGGTGTC 682063 29 100.0 32 ............................. AGCTTCACCATGCTCACGCTGACACCCAGGTA 682002 29 96.6 31 ........................A.... GCCGGCGCTGCTGGCGGCTCAGGGAAACAGG 681942 29 96.6 32 ........................A.... CAGCGCTTCGTACGACACCGCGGTTGGCGCCG 681881 29 96.6 32 ...................A......... GGCGTCGGCGGCCCGTGGGCGGACGTGACCGG 681820 29 96.6 32 .........A................... GCACTGGTGGCCCGCACCAGTTCGGGGTGCGG 681759 29 89.7 32 ........T.....C.............T CAAGGTGCTCCCGCTGACGCCCCACACCGCCG 681698 29 100.0 28 ............................. CCTCCTCGACCGGGATTTCCCACTCTGC 681641 29 79.3 32 C..C....T..A.CC.............. CAGAATCCCACCCCTCCTGCACCTCCCACTTC 681580 29 82.8 32 C..C.......A.CC.............. ACGAACCTCCTCGTCGACACGGTCCGTATCAC 681519 29 79.3 32 C..C.......A.CC.....A........ ACGACGGACGCGGGGCGTTCCCGCAGAGCACG 681458 29 100.0 32 ............................. GACAGAGCGGTCCGGGTCACCGCCAGCGTGTG 681397 29 100.0 32 ............................. CTGCTGACACGGCACCCCGACCTCTTCGCGGT 681336 29 100.0 32 ............................. TGGGAAGACGCCATCGCATGGGTGCGCGACCG 681275 29 96.6 32 .............C............... TACCCGGCCATCCCTGCAGGCCACGAGGGGTG 681214 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ================================== ================== 37 29 95.5 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CCATGAGGGTGGCGATCCCCTCGCTTGAGCGGCTGGCAGATGTCCTCGGCCTGATCCGTTCGCGCCGGATCAGCCGGAGGGGGCAGGTCGGCGCCTACTCCTACGCGGTTCATGGGGCAGGGTGCCGCTTCGTGTGCGACAACGGCACTGAGGTCGATGTGGACTTTGCAGCCGACGGGAGTGAAGTCTTCGACCTCTGGCGGCTGCGCTGGTATGGGCTGAGCCTGCCGGAGCCTCGTGACGTCACGGATCAGGACCTGCGGGCAGCGGCGCGGTCGCTGCAACCGCTTCTGGCCGAGGTGCGGCCGGGGTGGTTCAGCGTAGCCACCGACATCACCTGTGCCGGGTGCACGACGCCGGAGCGGTGCCCCAGGCCGCAATGGCTCTGCGGACCACTGCGCCCCGCTGGAGCCGCAACCCAACTGAAGGGCGTTATGTCCGAATCGCTGAAAGTTAGTAAACTCGACTCACCGTCTTCCTGAAACCGCAGCTCACAGCCT # Right flank : ATGGCCTCGGTGCGGGACAAGATCGGCGAGGACGTGGTCCTCGCGCATGTGATGGGGATTCTTGAAAACGGTCAGGGATGCTCTTCGCATCACTTGCTCTGGTGTTCAACGAAGTGGGGAGTTTCAAAGGAGCGTGGCCCGGGTCGTCGGCTTGGGTCGCCTGCTCGTGGAGTGTGCGGGCCGTGTCGAGACGTCGAGACGCTGGCTTCGTATCGGTGGCCTATCCGGGATCCTCACGCACGGCCACACCAGCGATCAGCTGCCTGCGGAGAGGTCCCCGGCAAGGAGCTGTGCCGTGAGTTCCATGCACCGCGTCCGGGCCGCGGAGAAGCCGTAGGGCATCTTGGTGACCGCTTCGAAGGCGCTCATCTGGGCTTCCTCCTCGCCGCTCGCCTCGGCGTCGTAGATCTCGAAGAGCTTCTCCTCGGCCGCTTCCAGTCCGGCCGCTTCAATGGCCTGGAGCAGGGCCTTGTGGTGGGCGCAGTGCTGCGCGGCGAGTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 684802-684279 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000003.1 Streptomyces tubercidicus strain NBRC 13090 sequence3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 684801 29 79.3 32 T....TG.......C..A...A....... TCGACGCAGGGAGGCGCCATCGCCAACAACTC 684740 29 89.7 32 ............TAC.............. GGGCTGAGCAGTGCGCCGCCGGAGGCGAGGAT 684679 29 82.8 33 G..G....T..G.G............... GTAGTTGAGTCTCGGGACGATCTCCCCGCTTTC 684617 29 93.1 32 ..............C.T............ GACCAGCTCTCGAACCAGCTGTTCAGCTCCCT 684556 29 93.1 32 ...T..........C.............. GGCAAGAAGGCGCTGAAGGCTGCCCGTACGGC 684495 29 86.2 37 ..............C...........TGG TCCCCGAGCTGGGCCACCCCGTTGGCGGCCCCGAGCT 684429 29 100.0 32 ............................. TGCAAGTTCCTGGGGTACGTCGACCCCGGAGG 684368 29 93.1 32 T.............C.............. CGTCTTCCGGCCGGCTCATGACTGGGTCCTCT 684307 29 96.6 0 .....G....................... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 90.4 33 CTGCTCCCCGCACCTGCGGGGTTGGTCCC # Left flank : GTGCTTCGTACGGACGGGAGCCGCATCGACTTCTCGTACCAGACCTGCCTGAGTCGCCCTACCTACCGCCAACAGGTCATGAACGTCATGCGAGACGAGGTTAAGACTCACGTCAACACCTACTTCGAGGCTCGAAAGGAAGCTGGCTCGTTAACCTCGGACCAGTCCGGCGTGCATCTGAATAGCAGCAACACGGCTGTCAGCTACTTCCGCGGACCCTCGTTTGTCGTCATCGCAGAGGAGTTCGCCGGGACGGTCGGCGGGTGGGAGGCGATTGAAATGACCCCGTCGACGGAGCCCGGTCTCGGAAGGTTCAGGGATCGCCAGTTGGCTCAACAATGGTGCAGCCACCATCAGGAGCGTGCTGTGCTTGGACTTCTCTCGTCGCAGGAGAACCAAAGACGTCCTCGCAGATAGCACCCAGGTGGCCTCCCTACGTGGGGGAGATCATGGTTGGCACTCGGCCTGTCGGGGGCCGTCGACCACTGGATCGTCGGTGC # Right flank : GGGGGGGGCTGACTCCGGGTTCGGTGTCACAATTGTGGCCAGGGGTGCTATCGATTCCCCGCCACCATCGGGTCACCTCAACTCCCCCGCGAGACGATCGGGCACCTCCAGCTCCTGGAGCGCCTTGCCCCAGACGGGCGGGGCCCGGCGGCCTGGCAGCTCGCCGCCGGCCTCGCCCGCCCCATAACGGTGGCTGCGGAAACCGACGGCCCGGCTTACTGATCGTTTCAGAATGCCAACCTGCGGAGAAGCTGGCGGCCCATGGAACAATTCCTTCAGCCACGGGCGCAGGGGGATGACGCGGTATGGAACGGGTTGGGGCTGCACGGGATCTTGTGCTCGGCTACATCCACGCGCTGAACGCGATCGACGACGCCATGAGGGTGGCGATCCCCTCGCTTGAGCGGCTGGCAGATGTCCTCGGCCTGATCCGTTCGCGCCGGATCAGCCGGAGGGGGCAGGTCGGCGCCTACTCCTACGCGGTTCATGGGGCAGGGTGC # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 686765-685818 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIR01000003.1 Streptomyces tubercidicus strain NBRC 13090 sequence3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 686764 29 100.0 32 ............................. TTCATCTATCGAGCCACGAAGGACTCCGCCGC 686703 29 100.0 32 ............................. GACCGGGAGGTCTGCTACTGGGGGCGTTCAGA 686642 29 100.0 32 ............................. GACCACGAGGGGCCCCTGTGCGGTGTTTTCGC 686581 29 96.6 32 .........A................... CCGGACGACAGCTCAGACGTCCTGCTCCGGAT 686520 29 96.6 32 .......................A..... CCCGCCCGCCACCACGTCATCCATCAGGCCGG 686459 29 100.0 32 ............................. TCGCCCGCACTCAGTACGCCGGACGCGAGTCC 686398 29 100.0 32 ............................. TCTGACGGGGCTTTGGGGCCCTGTCCTTGTCG 686337 29 100.0 32 ............................. AACATCCACAACACCACGACCGTGAACGCCAC 686276 29 100.0 32 ............................. CCGGCCATCACAGCCCAGGAAGCGCCGGGCAT 686215 29 100.0 32 ............................. GTGGAACCGCTCTGCCGGTAGTTCGGCCCGTG 686154 29 100.0 32 ............................. TGTCCGCCAGACTGCCGGGCGAGGCGACCGCG 686093 29 100.0 32 ............................. AAGATGAACCGCCTCCCCGCCGGCCTGGCCGC 686032 29 100.0 32 ............................. TTCATCGGCGCCGTGATCCTCGCGGGCATCAT 685971 29 100.0 32 ............................. GACGTCGGGAAGTGGCGCACCGGCGGCTCGGA 685910 29 96.6 32 ....G........................ CGGAACGGTGCCTCGACCCGGCACGATGCGTT C [685901] 685848 29 82.8 0 ...C.......A.C.......G......T | A,C [685824,685838] ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : TGCGGTCGGCGTCGCGGGGGATCCTGCCCCTGCACCAAGCCCCCACCCTGCGCGCGAGACCATCTCGGGGTGGAGCAATCGGCGGCGCACCGCGCGGCGCGCTCTCGTCCTGTTCGGCCTCAGGCGCCGCCGGCAGCGCCTTGTATGAGCCCGTTACTGTGGTAGGCGGAACAGCTCCCAGGAAACATCTCCATCAGCCCGACTGAGACCTACCGTCGGCGGGCGGCCAAGTCGAATCGGGCATCGCGTCCCGCCATCACGCCGGCTCAAACCCGGCAAGATCCGGCGTGACGGATCGAGTGAGAGTCCAGTATTAGCCTGGGGACACCGACATCACCTGTGCCGGGTGCACGACGCCGGAGCGGTGCCCCAGGCCGCAATGGCTCTGCGGACCACTGCGCCCTGCTGGAGCCGCAACCCAACCGAAGGGCGTTATGTCCGAATCGCTGAACGTGAGTAAAATCAACTCACCGTCTTCCTGAAACCGCAGCTCACGGCCT # Right flank : GCCAATACCGTGGGGTCACGCTGGCTGCCGCTGCTCCCCACGACACAGGGATGACCCTTGGGAGGGGCTCGCAGACGCCTGCACTCCTGCCCTGCTCCTCCGTTGAGAGTCCGCCCGAACCTATGAACCCAACTCGAACCGCTTGCTTGGGGAGGTGAGCAGGACTACACCAGGATTCCTCGTCGCTCGAACCCGAGGGTTGACGTGGCGATAGGACGCGATTGCCAAACGCTGTCGGAATAACTGCGCCGCAGGGCTTACAAAGTCTAAGAGGGAGTGGCCATGCCTGAATTTTGGATTGGGCATCGACGGTATCGGACGAAGGGGGAGGCGAAGGAGGCCGTGCGCGCAGTGCTGTACCGGTACCCCATGGGAAGCATCGTGGACCAGGAGGGCGACCATCAGCTGCTGCTGGACCTTCTCGACAAGCATCATGAAGCGGAAGACAAGGTCGGCCCCGGCATTGATGCGTTTGCGATCGCTCCGCCGCAGCGAGGCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //