Array 1 472182-472397 **** Predicted by CRISPRDetect 2.4 *** >NC_016109.1 Kitasatospora setae KM-6054, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 472182 27 100.0 36 ........................... GACGCCTGGGCCGAGGGCGGCGACGCGCTCGGTGTC 472245 27 100.0 36 ........................... AGCGCCGGCGCCGTGGGCGGCAGCGCCTGGGCCGAG 472308 27 100.0 36 ........................... GACGCCGAGGCGCTGTGCGGCTCCGCGCTGGCGGTC 472371 26 81.5 0 ......A.....T.G..-.A....... | C [472383] ========== ====== ====== ====== =========================== ==================================== ================== 4 27 95.4 36 GGCGGCGACGCGGGCGCGATCGGCGGC # Left flank : GGCGAGCAGGACGAGAGCGGCCGGGGGATGCTGCTGATCAACGAGCTGGCGCACCGCTGGGGCAGCCGGGCGACCAAGGACGGCAAGGTGGTCTGGTTCGAGATGGAACTGCCGGTCCGATCGTCACACTGATTCGGCGTCAACTCCCTTCCCCCGCAAGCCCGTCAACCGCGCGCGTCACCCCGTACGGCATCCGGCGGTACGACGCTCACCCGTCGCGGCGGTGCGTGTGCCCCGGCCGGGTGACCGGTCGGCCCGCAGCGTGCGGTGCGGGCCCGCGGACGCCGATGATCGTCGCGTCCGGCACCAACCCGCGCTCGACGCCCCGGCGATCGGCGCCAAGCTTGGAGAACTCGATGCGTTCCAGCCTTGCCAAGGTCACCACCGCCACCCTCCTCACCGGCCTCGCCCTGCTCGGCAGCGCGGGCACCGCCTCCGCCCACTGCCACCACGTCCACCCGCACGGCGCGCTGGCCGTCGGCGGCGACTCGGCGGCCCAG # Right flank : CGACGCCCTCGCGGTCGGCGGCGACGCCTTCTCCTCGCACTGACACCCCTCCCCCTCCGGCGCGGCGGCGGTCAGCTCCCCACCGGGCGCCGCTCGCTGCCCGCTGCCCGCCGTCCGCTGTCTGTCAGGAGAGCGGGGTGACGTACGCGCCGGAGATGCCGCCGTCCACCAGGAAGGTGTTGGCGGTCATGAAGGAGGAGTCGTCGCTGGCCAGGAAGGCCACCGCGGCGGCGATCTCCTCCGGTTCGGCGAACCGGCCGAGCGGGATGTGCACCAGCCGGCGGGCGGCGCGCTCCGGGTCCTTGGCGAACAGCTCGCGCAGCAGCGGGGTGTTGACCGGCCCGGGGCACAGCGCGTTGACCCGGATGCCCTCGCGGGCGAACTCGACGCCCAGCTCCCGGCTCATCGCCAGCACGCCGCCCTTGGAGGCGCTGTAGGAGATCTGCGAGGTCGCCGCGCCCATCACCGCCACGAAGGACGCGGTGTTGATGATCGAGCCC # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGACGCGGGCGCGATCGGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 613839-613078 **** Predicted by CRISPRDetect 2.4 *** >NC_016109.1 Kitasatospora setae KM-6054, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 613838 29 100.0 32 ............................. GGATCCGGGTCGCTGGCCGACCCGGTCGTCAT 613777 29 100.0 32 ............................. CGGGACCGCGAAGTCGTGCTCGCTCTAGTGGG 613716 29 100.0 32 ............................. CTGCTCGCGGAGCTGCGGACCCGCGGCGTGAT 613655 29 100.0 32 ............................. GCCTACGCCGACGCCCAGCACACCCTCGCCGA 613594 29 100.0 32 ............................. TCACCCCCACCGAACTCCTCGCCACCGACGCC 613533 29 96.6 32 ............................T CCAGCCGTGGGTGCCGCAGCAGTTCCACAGCA 613472 29 100.0 32 ............................. CTCGGCGAGGCTGCCGACCTGATCGACACCAG 613411 29 100.0 32 ............................. AGGTTGACCCTGTAGGTCAGGACGCAGTGCTG 613350 29 96.6 32 ............................G CGGCGAACGCGGCGCGCACCGCGTCCAGGTCG 613289 29 96.6 32 ............................T CGGCGTCGCGCCGTCTTCCCCCGGGTTGTCGG 613228 29 100.0 32 ............................. GGACATCTGGGGCGACGACGGGCGGGCGTGGT 613167 29 100.0 32 ............................. GCGCCCTCGTCGTCGGTCAGGCCGTCGACGGC 613106 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : GCCCTCCTCACCCCGGACGGCATCGACCTGGACGACCAGGACGTCAACCAGTTGTGGGACGAGAAGGTCGGCACGGTCCAAGGCGGCGTCAACTGGTCAGCGGAGAGCGCTGGTTCCGTCCTCCGCGCCATCGATCCCGGCATGGGGGACGAGAACGAACACCTGGCGATCATCGGCCCCGAATTCGACAACGACCCGAAGCAGCCCCCGCGATGACCGTCATCGTCCTGATCGCCGCCCCCGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCCACGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGACCTCCTCGCCACCCGCATCGGCACCGGCCAAGCCATCCTCGTCGAACCCGCCACCAACGAACAAGGCTGGACCGTCCGCACCGCCGGCACGGACCGCTGGAAGCCCGTCGACTTCGACGGACTGATTCTCTCCGCCCGCCCGACCCGATAAAACCGCAGC # Right flank : CCCGCACATGTGTTGCATGGCGATGCTGGCTTGAGCTTGCCCCGCTTTGACAGACACCGTTGGTGTGGTGGTCAGGCCGCGAGGGCGGCCTCGTATTCGGCGGGACTGCGGTAGCCGAGGCTGCTGTGCAGCCTGCGTATGTTGTACCAACCCTCGATCCATTCGAAGATCGCGGTCCGTGCTGCGGCCCTGCTGGGCCAAGGCCGGTCGCCGGGCAACTCCCGCTTCAGCGTGGCGAGGAACGACTCGGCGAGCGCGTTGTCCCAGCACTGGCCGGTGCGGCCGACCGACAGTCGAATACCGAACTCGCTTGCCATGATAGCGAATTCACGGCTGGTGTACTGACAGCCGCGATCCGAGTGGAAGAGCGCTGTTCCGCTCGGGCGGCGGGTTTGGCAGGCGGTCCGTAGCGCGTCGGCGACCAGTTCGGCCCGCAGGTGGTCCGCGGCGGCCCAGCCGACCACGCGACGGGAGGCGATGTCGATGACGGTGGCCAGGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 623530-625876 **** Predicted by CRISPRDetect 2.4 *** >NC_016109.1 Kitasatospora setae KM-6054, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 623530 29 96.6 32 ............................T TGACGTGGATTCCATCAGACGTGTGTCGACGT 623591 29 100.0 32 ............................. GGGACGGCCGAGGGGAGGACGTCGTGTCCCTC 623652 29 100.0 32 ............................. GGTCGTGGTGCCGGAGACGGTGATGCTGGGGG 623713 29 100.0 32 ............................. CAGCAGGCGGCCGGAGCCGAGCGCGACGCCTA 623774 29 96.6 32 ............................A CGTGTCCAGCGTAGGCCCAACTGGGTTGTGAT 623835 29 100.0 32 ............................. TGCCGTTGCAGGCGTAGCACGGGGGTTCGTCG 623896 29 100.0 32 ............................. CGGCTGCCGCCGCTGGTGAAGGTGAAGCCGAT 623957 29 96.6 32 ............................G ACCGACATGGCCCGTGAGTTCGCAGTCCGGCA 624018 29 96.6 32 ............................G CAACCGGGGCGGTTGTCGTGACGGAGAAACGT 624079 29 100.0 32 ............................. CGGCCCGGGATCCACGTCGAGGACATCGTGAA 624140 29 100.0 32 ............................. CGGGACAGCGGCGGCCGGGGCTGCGGGCTGCT 624201 29 96.6 32 ............................G TCGGCCGAACACCGCGCGGCCACCGGCAAGGA 624262 29 96.6 32 ............................G TTCGACCACCACCCTCAGGTAGCGGCTGCCGG 624323 29 96.6 32 ............................G CCGAAGCCGCGCTCATCGCCGCCCACCGCCTC 624384 29 96.6 32 ............................G GGCGTGTACCCGGAGGCCGGGCTGCAGATGTC 624445 29 100.0 32 ............................. CGGGAGCCGCGGCAGGAGATGGTCAGCCGGGC 624506 29 96.6 32 ............................T CGCTGCTGGCGGCGCGGCGATTCAACCCACCG 624567 29 96.6 32 ............................G GGCGTGTACCCGGAGGCCGGGCTGCAGATGTC 624628 29 100.0 32 ............................. CGGGAGCCGCGGCAGGAGATGGTCAGCCGGGC 624689 29 96.6 32 ............................G GGTCTCGCGATCCTGGCCAGGATCGGACTCGT 624750 29 100.0 32 ............................. CGGCCCGGGGCGCCCGCCGCCGGGGCGGAGAG 624811 29 96.6 32 ............................T TCTGTCACACAGATGGCATATTCGCGGGGCAT 624872 29 96.6 32 ...............A............. TCGGCGAGGCGGGCGGACGTCATGCGGACGAG 624933 29 100.0 32 ............................. GCGGTGGACAGGCTGACCACGCTGGTGGGTGA 624994 29 96.6 32 ............................G CGGGGCACGACCCCGGCCGAGGACAAGGCGTA 625055 29 96.6 32 ............................T CGCCCGGCGCCACGCTCAAGGACCTGCTGCTG 625116 29 100.0 32 ............................. CGCTGGACCGGGCTCACCGGCGCGCGCCCCGG 625177 29 96.6 32 ............................T TCTGGGCGTGCCGGTCTGCCCGACCCATTCCG 625238 29 96.6 32 ............................T CGGGAGAGTTGGGGCCGGGCGACCGGCTCCCG 625299 29 100.0 32 ............................. CCATCCCCGACGGCCGCGCGCTGTTCCTGGCC 625360 29 93.1 32 ..................A.........G ATCGGCCTCGGCGGGATCGGCGACACCCTGAA 625421 29 96.6 32 ............................A GCGGGCCCGCCCCATCCATCCGGTGGACCGCA 625482 29 100.0 32 ............................. GATGAGGGCCTGGCGCTCAGCCGGGCTACGGG 625543 29 100.0 32 ............................. GGACGAGGGCCCGTGCGGCAACGCCACCCACC 625604 29 96.6 32 ............................T ACGAACCGAGTAGCGTGACCGGGATGCACCAG 625665 29 100.0 32 ............................. ACCGACTTGACGAGGTCGGTCTCGTTGACGTC 625726 29 100.0 32 ............................. CGTGGCCGGCTCTTGTCCGGCATCACCCAGGC 625787 29 96.6 32 ........T.................... ATCTCCTCTTGCTCGTGACGAGTGGTCAGGCC 625848 29 93.1 0 .........................G..G | ========== ====== ====== ====== ============================= ================================ ================== 39 29 97.9 32 CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : CAGCCGCGAGGGTGTACTCGTTCCACCTCAACCCCGCCGCCCGCACCGCAGCAGCCCCGGCCGCGTCCATGAACTGGAAGGCCGGCGTTGCCTTCCCCAAGTCGTGCACACCGCAAAGCCAAACGAACAACAACCGCCCCCGACCCCGCCCACCCGCGATCACGTCCAACCTCCGACGCGTCACCGGCGGCAAGTACTCCTCCCACATCACCTCGGCCACCGCGGCCGTGTCCAACATGTGCGAGATCAGGAGGTTCGCCGTCCCCCCGGCCTTACCCGCCGACTTCCCCCACAACGCCCCTAACCACCCGGCCGCCTCCCCCGAGAGCCCCCACCGACTCACAAGCCCACCCACTCCCTGTGCCTCCGATCCGCTACGCTCCGGAGCGTAGAAGACCCCACTGACAATCCGGCCGCCACCCAGACCATGCGCACATCCCAACCGAGTTCAACTAACAAAAATACTGCCCCCTAACCCACAAAACACCAGCTCATCAAGC # Right flank : GCTACCACCATCGACAGTCCCTCCCCTGCGAGTTGATCATTCCTTCTCGAGCCATGGTCCGAATCGGAATACGGAGCCGCTGTTTGCGATTGGTCTCTTCGCACGATCGTACGAAGGGGGACGCTGGGTGAGCGATTTGAAGATGTTCAGGCTCGGGGTGGACAGCCGGGATGTGGAGGTGCGGGGCTCGACGGTGGCGTTGGAGGTGGAGCTGCAGCGGCGGGTGGAGGCCGGGATGGAGCGGATGCTGGGTATCCGGTTCCTGGCGTCGGAGTACCCGACGGGGCCATGGCACCGGGGGCGGGTGGACTCGCTGGGGATGGACGAGAACGGCTCTCCGGTGGTGGTCGAGTTCAAGAAGGGCAGCGACAGCGGGGTCGTGTCGCAGGCGCTGTCGTACCTGACGTGGTTGAAGAGCAGCCGGCTGGAGTTCGAGGCGCTGGTGCGTGCGACTACCGCCGATAGATGACACATACCGACGATGACTATCACCATGATCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7272977-7274051 **** Predicted by CRISPRDetect 2.4 *** >NC_016109.1 Kitasatospora setae KM-6054, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 7272977 29 100.0 32 ............................. CGTGCCGATCCGAAAATCATGGTCAGGTCTGC 7273038 29 100.0 32 ............................. GCACAAGAGAGGGGCCGGCGGCTACCGGCCCC 7273099 29 100.0 32 ............................. CCTGTCGTCAGAACGTGCATACCGTCCAACGG 7273160 29 100.0 32 ............................. CGGTCGAACACGCCGTCGGTCTGCGCGCGCCG 7273221 29 100.0 32 ............................. CAACTACCAAGCGGGCCACCGCACCCACGCCC 7273282 29 100.0 32 ............................. TCAGCGGGCGACTTCCGCCCAGCATGTTGTCA 7273343 29 96.6 32 ............................A GTGCAGCAGGCGGTCCGCGGTGCCGGGCGCGA 7273404 29 100.0 32 ............................. GGGATCTGCGGGAGGCCGTCTATCCAGGTCTT 7273465 29 100.0 32 ............................. GTAGTGATCACGAGGCCGAGCCAGGTGGTCAT 7273526 29 100.0 42 ............................. GCGATCCAGCGCATGCTGCGGTCGCCGCCGAGGCCCTGGGCC 7273597 29 100.0 32 ............................. GGCATCGGCGGCGCGATGGAGCAGGAGCCCAT 7273658 29 96.6 32 ............T................ GGATTGGGTGCGCCCCCCGGTATGCACCACAG 7273719 29 100.0 32 ............................. GCGACGCCGCGGGTCCGGATCACCGCGACGTA 7273780 29 100.0 32 ............................. GACGCCTACCGCACCGTCGCCGCCCAGCTCCG 7273841 29 100.0 32 ............................. CACGTCCGGACGCTGGCGCACTCGACGTACAG 7273902 29 100.0 32 ............................. TGCTCCAGCCAGTACGGCAGCCACTCGGAGAG 7273963 29 96.6 32 ................T............ ACGCCGACCGCGCCCAGGAGGAGCTGGTCCGC 7274024 28 79.3 0 ............TT........-..G.GT | ========== ====== ====== ====== ============================= ========================================== ================== 18 29 98.3 33 GTCCTCCCCGCGCGAGCGGGGGTCTACCG # Left flank : GCTCGCACCCGGCACCGACATCGCCACCCCCGACCCCGACGAGCAACTCGTCGACCTCTGGGACCCGGTCCTCGGAGCCGTCCCCGGCGGCGTCAACTACTCCACCGGAGAAGCACAGTGAACCGCCGCCCTTCGGCAACCGCCGCCAAGGAACCCCCATGGCATCCCTGACCGTCCTGTCGATGACCGCCGTCCCCGACCACCTGCGCGGCGCCCTGACCCGCTGGCTCCTGGAAGTCACACCCCAGCTGTACGTCGGCACCGTCTCCGCCAAGGTCCGCGAAGAACTCTGGTCCTCCGTCAGCAACTGCATCGCCGACGGAGTCGCCGTACTCGTCCACCCCGCCGCGAACGAACAGGGATTCGCGCTGCGGACAGCAGGAACCCAACGACGCCAACCCATCGACTTCGACGGCCTGCTGCTCATCGCCCAAACCCGAGCGACCACACCAGAAGGTCAAGAAATCGCAAAGCCCTAGAGAAGGCGCAGGTCAAAAAGG # Right flank : TTGGTGCGTGAGGGTGTGTGGTGCGGAGGGCGGGTCTTTCCCAAGGGGGCGAGTTACTGTCGGACTTCGGTCTCATCATGCTTCTGCCGGGGCGACGAATGTCGCTCCGAGCATCACCGCAGCGGCAGGTGTCTGATCCCGGAGGCCGGGAGGATCCTTGATGGTGCCCATGCCCGAAGGGGTGCTGGTGGGCCTGGGGAATGGCCGGCCGGCCCGCACCCGAGGTTTCAGTGCAACTGGTGGCAATTGCGTTCCTGAACCGTTTGATTGTGATCGCGGTCTGCGAGGGCTGGAGGGCGTAGGCGTCGAGCTTGTTGTGGAGGCCGATGCCGCGGCCCTCCTGGCACAGGTGGAGCAGGTGGCCGCCGGTCTCGGCGATCCGCTGGACGGCCTCGCGCGGCGGCGGGGCGGTGGTCGGGGCGTCCGCGGTGGGCGTGGTCTGCGGTTTGGTGCGAGGGGCCCAGCCGGGTTGTTCACATGCGAACCGGGCTGTGCCCCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //