Array 1 123257-123109 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000014.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 123256 28 100.0 32 ............................ TTTTGGCCAGCTTAATCTCTCTAATTCAATTG 123196 28 100.0 32 ............................ ATTAAAAGAGCTGAAATAGAATTACCAGATCG 123136 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTACCGTATAGGTAGTTTAGAAA # Left flank : CATTGCCCTGCCAAGGCAATGGCGCTGACGAAGTGGGCGATAAAAAACGATTTTGTGGTGCGACTTTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAATGGGGAAGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAACTAGTCACCAAACAACAAAACGTCCGAAACTCAATCAACCAAAAAATTTTAAGGAACGGGGTTTTTGAAACTTAAATTTCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TGATACAATCTCTTTATTATTTATATCGTATGTTATACCCCAAAATTGAAAAATACATTTTCAAGAATTAAAACTATGTTTTAATAACCTAACTTAATAATAATATTTACAAAATTTAACAAATAAACAATTAAATACTATTGCTTAGATTTTTTTTATGACTATACTTTCAGTGTTTATAATAAACAATATCCGATGGATATTTAGCCGATTGAAATAAAATAAAATCAAATAAAACAGGTAATTACTTGACAGGAACGTCAAAATGCATTATAATTTTCAACACCAAACACCAAACACCAAACCTGCCCAACCTATAATTTAACGTTAGTAAAGTTAAGCACGTACGGTCTATTATCTTACTACAATTTATTTTTCCAGCAAATTCGGCAAAATTTCTCAAAATTTCTTATTTTAGCCTTTTTATCTCGGCCGATGGTTTTGGTATTAACCATGGTTGTTTTACAGTCTATCTCTTTTGCTAATTATGCATTAACCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7544-7751 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000018.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7544 28 96.4 32 ....................C....... ATCATAGCTCCAATATGGTCTAGATGAGCACC 7604 28 100.0 32 ............................ AATACATACTCATACTGAAAACACATATCAAT 7664 28 100.0 32 ............................ TCGAGTTACAACTCCTCAAATTGCAGAACACG 7724 28 71.4 0 .......G....T....CG....TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.9 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CTTAGGTATTGAAGCTGAGGTAAGAAAAATAACGTTAGAGCGATAAAAACGATTTTGTGGCGTGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACACCCGGTGCGTTAAGAACGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGGCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACATAAAATAAAATAATTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTCTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGACATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 73483-73271 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000018.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73482 29 100.0 32 ............................. ACGATATCATTATCACTGCCACTGGTGTTACT 73421 29 100.0 32 ............................. TTAATTTTGATGGTTTGGGTGATATCACATGC 73360 29 100.0 32 ............................. ATTTAAAATCACTCTCAGAGCGTGATAAAAAC 73299 29 79.3 0 ...C..............T..C..TTG.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTGGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATTGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTATAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAGATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAGAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATTATCGATAAAAACAACA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83695-83115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000003.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83694 29 100.0 32 ............................. CCGTTTTTGCCAGAGCTAAGGCGGATTTGATT 83633 29 100.0 32 ............................. TGATGTATACAGGCTTTCTAATGAATCCGTAA 83572 29 100.0 32 ............................. CTACAGTCTACAAGAGCAATACTAAAATCATC 83511 29 100.0 32 ............................. CACATTTAATACATAAATCAGTCACTAATGCT 83450 29 100.0 32 ............................. TACCACAAATGCCACTAAATAACTTTTCAAAT 83389 29 100.0 33 ............................. CTTGGTTATTCAGCACGTCAAGCTTGTTAATGC 83327 29 100.0 32 ............................. CAGCCATAGATAATATGTCTGGTTTATTTGAT 83266 29 100.0 32 ............................. AAAAACCAGATTATTTAATATTTGCTGATTCA 83205 29 100.0 33 ............................. GACTAAATAATGGCAAAATTTAAATTAGTTGCA 83143 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.3 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAAGTTAATGTTCTTTAAAAATTAGGAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAATTATCTATATTTAGA # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGCATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101724-101998 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000003.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101724 29 96.6 33 ............................T CCTCCAGCGTGGGGAAATTGTGCAGGCACATCA 101786 29 100.0 32 ............................. GCTTTAGGGCTGCTGTTGAGTTTCAACTGATT 101847 29 100.0 33 ............................. CAGAAAAAGATAGAGCAATAGCATTAGCTAAGC 101909 29 100.0 32 ............................. GGCTTGGCAAACTTCTATTGATGGCAATGTGC 101970 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 33 GTGTTCCCTATACACATAGGGATGAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACTAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAAAAAAAATCGGTAAAAAATTACTCTCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TTATTACTGGCTAATTCGTTAAAACTACCTGACGAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAATCAGTGGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTCAATCATATAAGTGGAACATTACTTGATATTTATGAAGCACGCTTTAATGCACAGGAATCACCAGATGGTATAACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAAATAAAATCTTAACGCTCGATGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43756-43902 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000006.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43756 28 96.4 32 ....................C....... TTTACTTATTAGTAACGATCTAGGTATTGAAT 43816 28 100.0 32 ............................ TTATATTGTTGAACAACAGAACGGCAGAGTAA 43876 27 92.9 0 .....................A-..... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 33 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GTGTCTATCCTTAGCTATTATTTCTTAGTTCTTAGGTATTGAAGCTGAGGATAAGAAAAATAATGTTAGGGTGATAAAAAACGATTTTGTGGTGCGACATTCACAAAGTGCTGACAACTGAGCGAGGTTAGCATGACAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCATGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTTAAAGAATAAAAAATTTTGCGGAAAGGGGTTTTTGAAACTTAAATTCCTACTTATTACTAACCCTTTTTTTTAACTTAAAATAAAATATTTAAAAATCAATACGTTGAAAAATGGCTCAAAAAAGGGTTTTTAATAGTAAAATTGAGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAATCAAGAAATACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGGATAAAGGGGCTATTATTTCTAATAAACAGCAAATAATCGATGCGGTTTTCGAGCTATCAGTATTTTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTAATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCACATCGTTTATTATTTAACCGCAGTTTATTATTTCGACAATTTCC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9266-9533 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000010.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9266 28 96.4 32 ............T............... TATCGGCGAGGAACTTAAAAGGATCATTGATG 9326 28 100.0 32 ............................ TTAATTAAACAAAAAGCGTTAGATCGTATTAT 9386 28 100.0 32 ............................ AGCACGCTAGTAAAAGATGTCGGTGCTGGCGG 9446 28 100.0 32 ............................ CGCATTAGATGAAAATAAACTAAATACAAACA 9506 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GTATTGAAGCTAAGGATAAGAAAAATAGTGTTAAGGCGATAAAAAGCAGTTTTGTGGTGCGACATTCGCAACGTGCTGACAACTGAGCGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGACGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATGGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCCCCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATATTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATGTAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTATCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGATTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67568-67775 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGI01000010.1 Gilliamella apis strain P62G Gilliamella_apicola_P62G_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67568 28 100.0 32 ............................ CTTCTTTAGCTTTTCGGTAGTGAGCGGTCAAC 67628 28 100.0 32 ............................ TACAATTGTTTGTTAGTCAAGTGCATTGGCAA 67688 28 100.0 32 ............................ ATTCGAGTTAAGATAATTGGCCTCATCAAGAC 67748 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : ATAAGAAAAATAGCGTTAGGGCGATAAAAAAGCGATTTTGTGGTGCGACATCCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGATTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCTAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTACTAACCCTTTTTTTTAACTTAAAATAAAATATTTAAAAATCAATACGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACAACATTTATAGTATATCCGGTTCTA # Right flank : ATAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAGTATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //