Array 1 274930-274412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVML010000003.1 Escherichia coli strain UFMG-H7A NODE_6_length_367894_cov_4.150478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 274929 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 274868 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 274806 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 274745 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 274684 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 274623 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 274562 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 274501 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 274440 28 75.9 0 .A.........C..T....T-.G.....C | C [274415] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302123-300630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVML010000003.1 Escherichia coli strain UFMG-H7A NODE_6_length_367894_cov_4.150478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 302122 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 302061 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 302000 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 301939 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 301878 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 301817 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 301756 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 301695 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 301634 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 301573 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 301512 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 301451 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 301390 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 301329 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 301268 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 301207 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 301146 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 301085 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 301024 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 300963 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 300902 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 300841 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 300780 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 300719 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 300658 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //