Array 1 924384-931349 **** Predicted by CRISPRDetect 2.4 *** >NC_017502.1 Mycoplasma gallisepticum str. R(high), complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 924384 36 100.0 30 .................................... ATTTTCTCTTGGAAAATTACCAATTATACC 924450 36 100.0 30 .................................... CAAGATTTTAAATTCTGTTATAATCACCAC 924516 36 100.0 30 .................................... TTTTGCAACAGCTGGAATCGTTAGTGTGAT 924582 36 100.0 30 .................................... TTTAAGTGCGCTAAAACAAACTTTTTGTTA 924648 36 100.0 30 .................................... TTTAAGTGCGCCAAAACAAACTGTTTGTTA 924714 36 100.0 30 .................................... ACGAATCAAATTATTATTTGAATACAATCG 924780 36 100.0 30 .................................... TCGCGCGAAGAATAGTATAACACTTGTTTA 924846 36 100.0 30 .................................... AATTTAAATATTTGTTTATAATTATTATGT 924912 36 100.0 30 .................................... TATAGAACCTGTTGCTCTATTTGCTTTTGA 924978 36 100.0 30 .................................... TATTTTTTAAATGTGTAACCTTCTTTTTCA 925044 36 100.0 30 .................................... TAAATAATTTACTCGCATTAACTTTAGCTA 925110 36 100.0 30 .................................... AGAATAAAGGGTTAGATAGTTCTTGTTTTT 925176 36 100.0 30 .................................... TCCCATACAAAACCCGTCTTTGGACGGGTT 925242 36 100.0 30 .................................... AAAGCAAATAGAGTAACAGGTTCTATAACC 925308 36 100.0 30 .................................... AAATTTAAAATTGCCTATTGAATTCGTGAA 925374 36 100.0 30 .................................... TTTTTGGTTTAAAAAAGAACCACAGGGTAA 925440 36 100.0 30 .................................... AGTTAACATCAATGTAATAAATTTGACCTA 925506 36 100.0 30 .................................... ATGTTAACTCGATGTATCCTTACGTAATGA 925572 36 100.0 30 .................................... CTTTTTGTGCCAATTTACCGTACAAAGAGT 925638 36 100.0 30 .................................... AAAAACGTCGTCAATTGCGCTAGATCAGCC 925704 36 100.0 31 .................................... CAAGTCGATATAATTAAGCTATTTGATCCTA 925771 36 100.0 30 .................................... CGCCTAATAACCCACTACTAAACGCCACCC 925837 36 100.0 30 .................................... ATTAAAATTTAAATTATAAAATTCGCCAGC 925903 36 100.0 30 .................................... CTACTTCATTAAATCTACCCTCTGGAATAA 925969 36 100.0 30 .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 926035 36 100.0 30 .................................... CACACGATTGTCTTAAAGTCAAATCCTTCA 926101 36 100.0 30 .................................... GTTGAGCTAATTGGACTTAAAGCAAATATT 926167 36 100.0 30 .................................... TTGTTGTCGTAAAAATAGTTGATTGTATCG 926233 36 100.0 30 .................................... AGACTGTTTGGTGTAACTATTTATGTCGTA 926299 36 100.0 30 .................................... CACACGATAGTGTTAAAAACAAACCCATCG 926365 36 100.0 30 .................................... TTGTTTGATTTATTGGGTCGGTATAAGTTG 926431 36 100.0 30 .................................... AAATCTGAATGTTTGGTAATCTTCATGGTG 926497 36 100.0 30 .................................... TCGAAGTAGGCAAAACTTAATATTACGACT 926563 36 100.0 30 .................................... AATGAAGTAGATATCGTTAACTTCTTTTGT 926629 36 100.0 30 .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 926695 36 100.0 30 .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 926761 36 100.0 30 .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 926827 36 100.0 30 .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 926893 36 100.0 30 .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 926959 36 100.0 30 .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 927025 36 100.0 30 .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 927091 36 100.0 30 .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 927157 36 100.0 30 .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 927223 36 100.0 30 .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 927289 36 100.0 30 .................................... TTGACAATCTTATGATCTCAACTCACCCGC 927355 36 100.0 30 .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 927421 36 100.0 30 .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 927487 36 100.0 30 .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 927553 36 100.0 30 .................................... AATCCAACAAACGATACGGATGGTGTTAAT 927619 36 100.0 30 .................................... TTTGTATAGCTATTTATGTCATAGATATAA 927685 36 100.0 30 .................................... TTAATCTTAAAATAATAACTGTCTACTTGT 927751 36 100.0 30 .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 927817 36 100.0 30 .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 927883 36 100.0 30 .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 927949 36 100.0 30 .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 928015 36 100.0 30 .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 928081 36 100.0 30 .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 928147 36 100.0 30 .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 928213 36 100.0 30 .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 928279 36 100.0 30 .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 928345 36 100.0 30 .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 928411 36 100.0 30 .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 928477 36 100.0 30 .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 928543 36 100.0 30 .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 928609 36 100.0 30 .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 928675 36 100.0 30 .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 928741 36 100.0 30 .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 928807 36 100.0 30 .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 928873 36 100.0 30 .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 928939 36 100.0 30 .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 929005 36 100.0 30 .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 929071 36 100.0 30 .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 929137 36 100.0 30 .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 929203 36 100.0 30 .................................... AATCCAACAAACGATACGGATGGTGTTAAT 929269 36 100.0 30 .................................... TTTGTATAGCTATTTATGTCATAGATATAA 929335 36 100.0 30 .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 929401 36 100.0 30 .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 929467 36 100.0 30 .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 929533 36 100.0 30 .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 929599 36 100.0 30 .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 929665 36 100.0 30 .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 929731 36 100.0 30 .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 929797 36 100.0 30 .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 929863 36 100.0 30 .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 929929 36 100.0 30 .................................... ACTAACAACTCTAACGTCTCATTTTTCATA 929995 36 100.0 30 .................................... TGACTTTAAATGATATCCGCAACATTGATA 930061 36 100.0 30 .................................... TTATTATCAAAAATGCCAAGACAACAGTCT 930127 36 100.0 30 .................................... TATTTGTCAATAAGCCGTCTTGAGTTCGTT 930193 36 100.0 30 .................................... CAAGACATTTTAATGTTACTAAACGGTCTT 930259 36 100.0 30 .................................... GTTATGCAGATAAGTTTCACACCGACTACT 930325 36 100.0 30 .................................... TTAAAGTGCCGATAGTTTGTCAGATGTGTT 930391 36 100.0 30 .................................... TGTCAAATATATAAACGTGTTTTAAGTTAG 930457 36 100.0 30 .................................... AAAACCAGCTGATTTAGACGACACAAATAA 930523 36 100.0 30 .................................... TCTTAATCAATGAACCCGCACCATATTTTA 930589 36 100.0 30 .................................... TTCATTAAACCAGATTTAATTTATGGTGCA 930655 36 100.0 30 .................................... CTTTTATCATAATACTTATTGTAAAATTCG 930721 36 100.0 30 .................................... TTTCTTGATATAAGGATATAATATAATCAT 930787 36 100.0 30 .................................... AAAAACTTGACAAAATTAAAAATAAAAGTT 930853 36 100.0 30 .................................... AAAATTCTAATTAACATTCATCCAGGTTCT 930919 36 100.0 30 .................................... TGTCGCTATACCCAAACCCAAGTTTTTCCA 930985 36 100.0 30 .................................... TTAACTTTAGTTTTTCTGAATTTAGTCTAT 931051 36 100.0 30 .................................... TATTACAGATATAAAAGAAATTAAAAAGAT 931117 36 100.0 30 .................................... TTTAATGTGTATTTAGCGTTATGGTTTTTA 931183 36 100.0 30 .................................... AAAAATAGGTACAAAAAATTGTTTTAAGTT 931249 36 100.0 29 .................................... ATAAACTGCAATTTTTTCTCGATGAACCA 931314 36 97.2 0 .............G...................... | ========== ====== ====== ====== ==================================== =============================== ================== 106 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGTCGTGATATTATTTCGTTAGATACTTCTTACTCTAAGATTCTGAAATCAATAATAAAGATTTCAGAAGACTATATAGATCATGAATTTATCTATTCATATTTAGAATTATTACATTGATCAAAAGAAGTTAAAACAGTTATTCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTAAGTAACTTAACTCAAACTACTAATTTAATTATTATGAAGAATGATATTATCTATGATCTTGAAAAAAATTTTGAGTTTTTTGAGACATACTGTTTAATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTTAAAGTTATGGTTGATGATGAGTTTAAGACCACAATGTCTTTTCAACAGCTAGAAATAGTAAAAAAGGAATTAAAAAAGCATATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTATAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAAGATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTTTCTTGTAAATCTTTGATGGCATAAGATAAGTTGGCAACCTCAATTAAATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACTGTGTTGTTAATACTTACTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //