Array 1 4147-3378 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSD01000037.1 Paenibacillus macerans strain J1TS5 sequence037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4146 32 100.0 37 ................................ GGACGTGCGCTTGGTTGGTCCCCGGCACCTGCGGCCA 4077 32 100.0 34 ................................ GTCACCCGGCTCCATCGCCGTGTAATCGGGAACC 4011 32 100.0 34 ................................ GATTCCGATTTCGTCATGCACGTGGAGAACCGTG 3945 32 100.0 35 ................................ ATCGTGAAATCCACCGGAGTCACCCCCCCCATACC 3878 32 100.0 37 ................................ AGCACTCTATTGGGATTGGGTTACACGGGGAGGGCAG 3809 32 100.0 36 ................................ AGGCTCTATGCACGCGGGAGCCGACTACGGTAAACA 3741 32 100.0 34 ................................ AGGCGGGCGGCCTTGAGGCTGCGCTTAACCTCGC 3675 32 100.0 34 ................................ TTAGCCCCTATACGGATATAGAAGAGTAGACACA 3609 32 100.0 35 ................................ CGGGCTGCCCTCCATTTATAGTCATATCCCCTCTG 3542 32 100.0 35 ................................ CGTCGTCCTTGAAAAGAATCAGCACGTCCTCCGGC 3475 32 100.0 34 ................................ AGCCAGTGTTTTACAGTTTGTTCCAAGATACTTT 3409 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 100.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Left flank : ATGAGTACCCGCCATTTTTATGGCAGTAGGTGAGTCGGGATGCTTGTACTCATTACTTATGATGTTCAAACAACAGGCGTGGGAGGGGCCGCGCGGCTCCGGAAAGTGGCTAAGGCATGTCAGAACTACGTGCAGCGGGTGCAGAATTCCGTGTTTGAGTGCATTGTGAATGCAGCCCAGTTCACTGCTCTGAAATTGGAGTTAACCCAGTTAATTGATGAAGAAAAAGATAGCTTGCGATTTTATCGGTTGGGCAATAACTACAAAACCAAAGTAGAGCATATTGGGGCCAAGCCATCGATAGATTTAGAGGAGCCGCTTATCTTCTAGCGGTGCGAACCCCAAGCGCACATAAAATCCCTGGGAGGTTCGCACCCCGCGTCATTAAAGGATTTGTAGAGATTTTGGTTAAAATTAATGGAAAAATTTCGTGCTCGCAAAATGGGTTCGCACTTTTGGGCTTACGAGGCCTTGTGCCACAAGGATTCGCATGGCCCGCT # Right flank : TTATGCGACGCTCACGGCGGAATACCCGGACATAGTCGCACCAGCAAAATGAGCTTTTTCTCGAACAAGCGGTCAAACGATTGAGAAATATTCAGTCCTTAAATAGCCGGGGATAGAGAGGAAAAGTACGGGCGGGGGAATGACGGAGGAAACGGAGGTCCTATACATCGTTATCAGCAAACAAGAGGTGTCCACGCTTAATAAGATTGTCAAATCCATCGACAAATCCGCCTTTATCACCATTCACGACGTGCGGGATGTGTTTGGCGAGGGGTTTTTGGATATTTCGAAGTGAGTGACAAAAAAACGCAACCTTATTTGGTTGTGGTTTTTTGTTTCTCAATAAGTAAGTTGGCAAGACGCTGATAGCACTGTGTGCTCAAGTTCGACCTGGTATAATTTGTTTATGGAGCAACAAGGAGATGGTTACTATTAAGAGTTTTGTGAAAATCAATATAATGAGTTTTGGATACGCGGTAATGTTATCTTTCCCTATACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28497-29194 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSD01000027.1 Paenibacillus macerans strain J1TS5 sequence027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 28497 32 100.0 33 ................................ GCTGCGGTTTGCTCAACACGCTGGCCGAGAGGC 28562 32 100.0 35 ................................ GCTCCGGAATTTTGCTGCAGAAAAATTTCGTTAAC 28629 32 100.0 34 ................................ CGTGGTATTATTTAGGTGGGTATTTTCTTTGACC 28695 32 100.0 35 ................................ ATTATACAAAAAATTATCCAAGGAGTGTTGAACAT 28762 32 100.0 34 ................................ AAATGCACATGCTGCCGAAAAGGCCGATCTATCA 28828 32 100.0 35 ................................ CCGTAGGAATCCCGACGAAAGGCATTACGTATAAC 28895 32 100.0 33 ................................ AAGCTCATAGTCCAAAAAATCATTAAGAATGTT 28960 32 100.0 35 ................................ CCAATCGTCCGACCCATCCTCGCGTTTGACCTTGC 29027 32 100.0 37 ................................ CCAAATGTTAAGCCGGTCAAGTCTTTTGCTTTCGCGC 29096 32 100.0 35 ................................ ATATGCTGCACAATGAGCTCGTCCAATTGTTGAGA 29163 32 81.2 0 ..........G.............GAG...TT | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 98.3 35 GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Left flank : CGCCAAATGATCGAGGAATTAATGGATTTATATAGCGGCAAACCGGCCTTTTTGGACGAGTTGAGCCAAATCCATGACGGGTTAAATTAATGAGATCCTCCCTTGGGGAGTTTTTTGTTCAATTTAGAAGTCGTCGCCGCTTGGCTATACGGCCAAATTGACCGATTATTCATGGATGGATATTAGGAAATTTGTGGGGGAAAAAGGTTTTTGGGCGATTGGGATCGAAATAGGTGCGTAAGGCTATGTACCTTTAACGAGAAAGATACGACGATGTAGCCTTGAAGTAATGAAGAGTAATCAATTGGTTGGTAAAAGCGGGAAAGAACAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTGCGGGATATTGCGGCTTTGTTTAACTTGTTTTTAAACCATAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTTTGCTGGATGCGGGGGTTAGGTGGACGGA # Right flank : TATCGGATTTGTATAGCGGCAAACCGGGCTTTTTGGACGAGTTGAGTCAATTTCATGACCGGTCTAATTAAAGAACTCCTCCCTCGTAGGGGAGTTTATTGCTCAACTAGCTTGGCTACAAAGTCAGTAGACCGATTCATTAGAGAGATATTTGGGAAACTGTGAGGAAAAAGTTTTGGCCGATTGGAATCGAAATAAGTGCGTAAGGCTTTGTGACTTTAACGAGAAATATACGACGATGTAGCCTTCAAGTACTAAGAGGAAGATAATCAATTGGCTGTAAAAAACGGGGAAATAGCAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTCCGGGATTTTGCGGCTAAATTTTCCCTATTTTTAAACCATAAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTATGCTGGGTGTGGGATTAAGATGAACGCAGTCGCTCCCTATGCGGGAGCGTGGATTGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 29665-31428 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSD01000027.1 Paenibacillus macerans strain J1TS5 sequence027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 29665 32 100.0 35 ................................ GGATACTCTTTCACACGACGATTAACCAAACTACG 29732 32 100.0 36 ................................ TGGTAATCAGGTTGAATATCAAAACAATCAACCAGC 29800 32 100.0 34 ................................ AGGTTCGTAATTACGAGAACAACGAAGGACGCCG 29866 32 100.0 34 ................................ CTTTGGCACCGTGACTGATACCTCTGCTGGATCG 29932 32 100.0 33 ................................ CACCCAAATTGATCCGAATGACAACAAACATCC 29997 32 100.0 36 ................................ ACGAGCGGAACAATCTTAACGAAAAGGACAACGAAG 30065 32 100.0 32 ................................ TTGCTCGGCGCATTTGCGATCTTCGCGCACTA 30129 32 100.0 37 ................................ CGATCACCCGAGCCATAAAATCACCCTCTAGCTTAAG 30198 32 100.0 35 ................................ TGCCGGCTGGTCGTTAAACATCGGGGCGGCAAGGC 30265 32 100.0 34 ................................ TTGAGCACTCTTTTGGGATTGTGCTTTGCGTGCT 30331 32 100.0 33 ................................ TTAAGAAAGTCTTAGAGGAATCGTTGGTGCACA 30396 32 100.0 33 ................................ GATGTAAACGGCCCTGCGCTCATCATGACGAAT 30461 32 100.0 38 ................................ TCGACGAGATCGAAGAGAAAGCGCCGGAAGCGCCGCAG 30531 32 100.0 35 ................................ ATCGAAAATAACCACGCTGCCATGCACATCCGCGA 30598 32 100.0 37 ................................ ATTGGCATGTTTTAGCCCTCCTTAACCTATAGCAACG 30667 32 100.0 34 ................................ GTCGATATTGGCCGTGATGTTTGTAGCTTTACCG 30733 32 100.0 36 ................................ AGTCGGTGACACTGAGGAAAGCAGAAAACGTGGTTG 30801 32 100.0 33 ................................ TGACGGCCGAGGTATCCATAACGCTACAGGAGT 30866 32 100.0 34 ................................ TGATTTGGCCAGCAAGAAAAAGTATTCATGAGCC 30932 32 100.0 35 ................................ TTCTGAAGATCATTACCCTCATGTGATTGGAGTGT 30999 32 100.0 36 ................................ GTAGCTCTAGGGCTAATTACACTGGTAGCCAAAGTC 31067 32 100.0 34 ................................ AGGTCAAGCCACACCAAACCTTTGCTTAAACATC 31133 32 100.0 33 ................................ GTTAATAATCTTGATGTTGCGTTGCTTGAGATC 31198 32 100.0 35 ................................ GAGTAGGGTTTCCGCACATTACAGCTTATTGAATT 31265 32 100.0 33 ................................ ATCCATACTGAATGCACCGAGAAAGTCTGTATA 31330 32 96.9 35 .............T.................. GCCGACGGTCGCATATGTATGCCCATCCCCAAGCG 31397 32 93.8 0 .............T..........C....... | ========== ====== ====== ====== ================================ ====================================== ================== 27 32 99.7 35 GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Left flank : CGCTCCCTGTGTGGGAGCGTGGGAGGAATTATCGGATTTGTATAGCGGCAAACCGGGCTTTTTGGACGAGTTGAGTCAATTTCATGACCGGTCTAATTAAAGAACTCCTCCCTCGTAGGGGAGTTTATTGCTCAACTAGCTTGGCTACAAAGTCAGTAGACCGATTCATTAGAGAGATATTTGGGAAACTGTGAGGAAAAAGTTTTGGCCGATTGGAATCGAAATAAGTGCGTAAGGCTTTGTGACTTTAACGAGAAATATACGACGATGTAGCCTTCAAGTACTAAGAGGAAGATAATCAATTGGCTGTAAAAAACGGGGAAATAGCAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTCCGGGATTTTGCGGCTAAATTTTCCCTATTTTTAAACCATAAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTATGCTGGGTGTGGGATTAAGATGAACGCA # Right flank : GATGTAAAATCAATACCAAGTTGCCCCTTAAGATAACGCCACTCTCAAGCCTCAGCGTTCCTCTCTGCACGAGAGGGTGGAATGAAAGAAGGTCTGATTCTTTGCGATTACCAGGATCAATAGCCACTTCCCACATAGGAGTATCTTAATGAAAATTGCCTTTGGTTAAAGGCTTTTTTTGTACACTCAAGGAATGTGGAAATGTTCGCGTGTTTAATGTGGAGTGATTTTAGAGTGAAGCCCCCTCCTTATCAATTGCCTAGATGATTACTCCTTCGCTTAGAGAGAGGAGATAGATAAAGTTAAGGGAGGTTATGGAATTAACGGATTTATAAACGGCAAACCGGCCTTTTAGATGAATTGAGCCCAATCCACGATTAGACAAATTATTGAGCTCCTCCCTCGCGGGGGGAGTTTTTTGCTTAACTTGGAAATCACTGTAGAAATCCGCCCACAAAGGCAATCACAACCCTCAGATTCGTTTCTCACTCTTGCTTTAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 39989-41082 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSD01000027.1 Paenibacillus macerans strain J1TS5 sequence027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39989 32 100.0 33 ................................ TCGAGCCAAGGCATTGCCCGATTCGGCCATATG 40054 32 100.0 33 ................................ AATTGAATTAAGCAACTCATTAGTAGGAGTGCC 40119 32 100.0 34 ................................ TAAGCGGTCTTTATCCTTTTGCCAGTCTCTAACC 40185 32 100.0 34 ................................ CAGAAGACATATACACAGCAATGAAAATATTCAA 40251 32 100.0 34 ................................ CTTCCCGGTAAACACTTCATAGTCTGCCTTTCGG 40317 32 100.0 34 ................................ GGCCAACGCCGGAACCGGCACGAATGATAAAACA 40383 32 100.0 33 ................................ AGAGATAAAGCCTCCTACTTTGGAAAAGAACCC 40448 32 100.0 36 ................................ GGCATGCCAATGGCCAATTTCGTCAAGCTGCCGGTA 40516 32 100.0 34 ................................ TCCTTGATGAACATATGTTGAACCGCCGTAATAG 40582 32 100.0 35 ................................ CTAATTGGGAGAAACACCAAAATACTGAGGCTCTT 40649 32 100.0 34 ................................ TAATAGTTTCACGCGCTCCCCTCCCTTTACTTCT 40715 32 100.0 33 ................................ GCTTGATTCTCTGGACTACCGGGTAAATGATCT 40780 32 100.0 35 ................................ CTCGATCTGTTTGGTCATGGCCTGGGCGATTTCCT 40847 32 100.0 36 ................................ GAAAGTGTTCGGGTTTATTGCTGACGATGTAGTCCC 40915 32 96.9 36 ............A................... TTCGATCAATTCTTTAAAACTCCAAAACCGTATTGT 40983 32 93.8 36 ..........C.A................... TTTATCCGGAGCACAAGAAATTTCAAACGATAATTC 41051 32 90.6 0 ..........C.A.........A......... | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 98.9 34 GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Left flank : CGTAAAGCATTTAACTGGCCGAAGCCAAAGAATTCCGAAAAAATAAACGTAGAACAGACGGCAGCAACGGAAATTGAGGACATAAAGAAGCAGTACGATTTGCAGAATTATCGGGTGTGCGTTAACCTGGACAGCAAGAGCGGGGAAAAAGAAGAAATCTCGCTGCTTTCTCTAACGTTTCAACTAAATCAGCTTTTGATGCTGATTAATAACCCGATGTTATTCCCACATAAAGCCTATGTAGATATGTTTAACGAGCGGTATACGAAGGAGTAGCCTTGGAGCATGAACCGGGAAGTAATCGTTCTCTAGCAAAACGGAATATAGTGGCGGTGCGAACCCCAAGCTCACATAAAAATCCCGGGACATTCGCACCTCTCGCCCAGCGCGGGATTTCGGGATTTTACGTCAATACTTACCCCATTTATTAACCATAAAAAAGGGGATTCACACTAAAGCGTTTTCAAACCCTTGCTGGATGCGGGGTTGAAATGATCGCG # Right flank : GAATTTTACGCTGCTCATTTCTTCCATTTTGTGTCGCTCCCTACGAGGGGCTAGAATGGGATTTACTTTCCCAAGAAAGAAAAAAGACTCGCTAACTGGGTACGTAAGAACGAGCCCATAGGTTAATTTTGTACACATGAAGGAGAACCAGCTCACCTACTGTCCAAAAATTCTGAAGAGAATTTCTGGACAGTGAGCCCTTTTACATAAAAATAAGGAATTGCATTTTCGTATAAATTTAAAAAGAAGAACTACGAGTCTGCCTAAAAATCGATGCTTGACTGACGGGTTAGCCTCGAATGATCGATCCATCCGAAATATTTTCTACGCTAACGGTTGTCAGCGCGCCTATTCGGCCGAAAATCGGGGGGTTTCTTTTCTAAGGGTTGTATATGTTTGTATATGTGCTTATTTGGACGAAAACAGCCCTTTTACCGCCGAAAATTGGGGAATAAGCTCGCTGGCAACCGTTACATTTTGCAAACCCCCGTTTTAGCTCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12414-10494 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSD01000045.1 Paenibacillus macerans strain J1TS5 sequence045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 12413 33 100.0 36 ................................. TCACCCGGCTCCATCGCCGTGTAATCGGGAACCGGC 12344 33 97.0 35 ................................A AGGATTAAATAAAAATTACGCTTAATCGCATCCAG 12276 33 100.0 35 ................................. GGTACCGGGAAGACGGATAGCCGGCGGAGGATCTC 12208 33 97.0 33 ................................A CCATTAAACGCGCGCTGAGCGATCGGCTTGATC 12142 33 97.0 33 ................................A TAGGATCACCACCACTTAATTAATGACTTAAAC 12076 33 100.0 31 ................................. GTAATGACATGCGCCGATATTTGCGAGATGT 12012 33 97.0 34 ................................A TAGGATCACCACCACTTAATTAATGACTTAAACC 11945 33 97.0 38 ................................A ACCTGCCGGAAGATAGGATGCTAGTCTATGATCCGCGC 11874 33 97.0 34 ................................A CGGTTGGTGATATGCCTTGTTCCGCCACCGCCGA 11807 33 97.0 33 ................................C TTGTACTGCCGCACAGCGGGATTACGTCTTACC 11741 33 97.0 33 ................................C AAAACGCCGAATCGTGGACAAACTTCTCTTGCG 11675 33 97.0 37 ................................T TCCTTGGCTGCTTTGCCTTCCGCGTTAATTTGCTCAA 11605 33 100.0 35 ................................. GGAGGGGGAACGGACCCGGGAACCGATCCGGGGAC 11537 33 100.0 33 ................................. CGCCTCGGCCTCTCGATTGGAGCTTCCGCGTCA 11471 33 97.0 33 ................................T ATTTGCTCCTCTCTTACATTCCGAGATTTGCCC 11405 33 97.0 34 ................................C GCTCCGTCTCCGCTGTATGGATCTGCATTAAACC 11338 33 97.0 35 ................................T CCTTTCCTTGGAATGGATAGCTTAGACAACTTCCA 11270 33 97.0 35 ................................A TTTTCGGGAGTTGGAACGGCTGGCTCACGCTTGAG 11202 33 97.0 36 ................................A CGAAGAGTTACTGGAGGTTTTTTTGAGTAGTTTAGG 11133 33 100.0 32 ................................. GCTCATTTAATTTTCACCACGCTTATTAAATT 11068 33 97.0 35 ................................T GGACGAATATGCGTCGAAAGAGCCGCCGCACAAAT 11000 33 100.0 37 ................................. CGAGTACGCGCCGCAATTTAAAGGCTTGGGCTATAGC 10930 33 97.0 37 ................................C GGGAAGCAAACGGGATTGCAAAGGGAGAATCTATCCG 10860 33 97.0 35 ................................C AGTAACATCGTTTGCGAGAACAGTTCCTCGAAATT 10792 33 100.0 35 ................................. TTAATCTCAAAATCTTTGCGGTCCCGAAACTTCTT 10724 33 100.0 34 ................................. GGACGTTGAAGGCCGAGTAAAGGCTGCTGCCCCG 10657 33 100.0 32 ................................. CCGCTGGGAATTATCCTGCGGCTTTTTGCTTG 10592 32 84.8 34 ........-..C.C.......A..........C CTATGTCTTGAAACTATTTTTAAATGAGCTCTAT 10526 33 75.8 0 ....T....C.C..C..A.........A...AA | ========== ====== ====== ====== ================================= ====================================== ================== 29 33 96.9 34 GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGG # Left flank : CGACGAATACCCTCCATTTCTGTGGAAGTAGGTGATTATGAATGCTGGTATTGATTACTTACGATGTGAGTACGGTGAATGCCGCGGGACAAAGACGGCTTCGCCAGGTTGCCAAGGCCTGTCAGAATTACGGGCAGCGCGTGCAGAACTCCGTATTTGAATGTATCGTAGATGCGGCGGAATGGGCCGCGCTTAAAATTAAGCTGATCGAATTAATCGATCCGGAGCAGGACAGCCTGCGATTTTACCAGTTGGGCAACCAGTATAAAAACAAGGTGGAACATGTAGGTATCAAAGCCTCTCTTGATTTGGAGGGGCCTTTGATTTTGTAGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACCAAAATGATTGCATTACATTTGAATAATAGTAAAATAAATCCATTTTATTTGTTTAAAACTAGTCGGAAAATTAGATTTTAATACAGAATATGTAATTTATAATCCATATTCTGTTAGAAATCGGA # Right flank : CGTCCAGCAGAATCGGGAAAGGGCGAGACAGTATTCCAGGAGGGCCATCCCCCTCCTCGCACTTAAAGTAAGGGTTGAACAAGCCGCTAGAGCAATTTACTCCGGCGGTTTTGTTAACTTATAAATCACGGAAGTCAATCTCAATTCCCGCTCACTTGAACAACATAGCCGGCCCTCGATTCAGCAAGTCTGTTTTTTAAAACATAATAAGTAGGTTTATCGCATTCCGCAAAAAACAGGTATCCTTTTAAATAGATTCAAAGCAGGTATAATTACGGCAAAGGAGACAGATCGCATGTTGATCAGGAACGTATATCTGCGCCTGTCGGTCAAGTGGAAGGTCATCCTCATTTTTACCTCGCTGTTGGTGTTCATGAGCGGTTTATTTATCATTGGCTTTAATTACATCAACAAGCTCTATGATCGCCAACTGCTGCATAGCTCTTCGGAATTGTTGAACCTATACTCTACAAATATTGAGAATGAACTGCGCAAGATCG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 21132-20832 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSD01000045.1 Paenibacillus macerans strain J1TS5 sequence045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21131 32 100.0 36 ................................ CCGATCGAAACGGTCCACCTTGCAATCGTGCAACCG 21063 32 100.0 34 ................................ GCTCACCTGAAGGAGAACGGTATTGACGAAGCTG 20997 32 100.0 35 ................................ ACGTCGCTTTGACCTCGATGATTTTCCAAATCCGA 20930 32 100.0 35 ................................ ACGGCGCCGTCCAACGGATTATAAGCGAAGGTCTC 20863 32 81.2 0 ......................AA.AGCG... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.2 35 GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Left flank : AGCTTAGGCTTGCAGCTAGTCGTTTGGGTTTTTCATGAAATGATTCTCTTTTGCTATCCATTCCTCTAAACCTTATATTGAGATATAAAAGGCACCACGTAGGGTGTCTTTATCGCTTTATTTTGGTGCTTTCTGCTGTCTTTTTAGTCTCATATTGGTAAACGAGCTCCGTACAGGTAATAAAAATGATCTTTTCTGTGTATGGCTAGAAAAATGAGGTTAAGATTTCATATTCAATCAAAAATATTTGCGAAAAAGGTTTACCCTTAGAGTAACTGTGAAGTAACATTTCAATATACATTGTTTGTACTTTAGCTCAACTCCATATTCGGTGCGAATATAAAGTGAACATAAAAATCCCGGGGGATTCGCACCAGATTAATCGTGCTAAATACCCTTTTTTTCAATAAATACCCATATATAACTTTCAAAAATCCTTAAATTTGGGTTTATATAGATAATTAACTCTAAGATTTTACTAATATATGTTAAAAAACGCT # Right flank : GGCGCCTTCCTTACAGAGTTTATAAGTCATATCTCAATGGACAGTCCATACTGGGCTGTCCTTTTTTAGTTGAAGCTGTACTTTGTTGATATGGGGGCATAAGAGCATATGATAATTCTCTAAACTAAGATGAAAGTAATATTACCCAGAAAATTGTAGAATATTGGAAGGAGATTAGAGGGGGGGTGAAGAAATAAAAAAGTTGTAGTTCTTTAGGCGTGTTTCAAGCTTTAAACTAGAGAGTCGTTTGGATTATTTTTCAGCGACAGGAGGCAGGCAATGGAATACATAGCCCATATACGTGAGAGTGACCGGGAAAACCAATTGCTTGAAACGCATTTGCTTGGGGTCAAGAATTTAGCCGAATCTTTTGGTGCTAAGCTTGGAATCGGGCATATTACCGGCCTGGCTGGAATCCTTCATGATATGGGGAAGTTCACGAAGGCATTTCTGGATTATCTCATCGAAGCGGTGAATCATCCGGAGGCTCCGCCAAAGCG # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //