Array 1 7214-10103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000117.1 Geitlerinema sp. PCC 9228 Ga0115370_1133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 7214 23 100.0 49 ....................... AGATAGAGGAACATTCACTTCCTCTTGGTCGGCGGCTTTCATTCCTAAA 7286 23 100.0 47 ....................... TCAGGACAGCCAAAGAAACGTCCATATAGCCCACTTTCATTCCTAAA 7356 23 100.0 50 ....................... CCATAAAGCACGACCTGATGCTGTAGCTTCTAGCCTCTTTCATTCCTAAA 7429 23 100.0 53 ....................... TGGATCTCCAATAAAAAGGATCTTCTTATTGACAGGACTCTTTCATTCCTAAA 7505 23 100.0 50 ....................... ACAATCTCAGGTGTCCATCGCGACGATGGATCGACTCTTTCATTCCTAAA 7578 23 100.0 49 ....................... TCGCCTAGGGTTTGAGAAAGGCTGCGCGATAACATCTTTCATTCCTAAA 7650 23 100.0 53 ....................... ATTTCAATTCTGGCTACGCACGCGCCCGCCAGCTTTTGGCTTTCATTCCTAAA 7726 23 100.0 52 ....................... AGAGTCTCTAACGCGGGAAAAACAAGCCGAATCGCCGTCTTTCATTCCTAAA 7801 23 100.0 55 ....................... TCTCCGATCTGCCGCAAGCTTCCGGCGAAACTTATTACGCGCTTTCATTCCTAAA 7879 23 100.0 49 ....................... GAGTTACCCGAAACCAAGCGCCAAATAGGGTTGGACTTTCATTCCTAAA 7951 23 100.0 50 ....................... TATCTACTCATTCGCTGCGGCGAACGGCTTTAACCTCTTTCATTCCTAAA 8024 23 100.0 48 ....................... ATCAACTTGTTTTTTGACATGGCTAAGGTGCTGGCTTTCATTCCTAAA 8095 23 100.0 50 ....................... CCCATTGTTGAACGAGCATGGAAATACCTCGGCTGACTTTCATTCCTAAA 8168 23 100.0 47 ....................... ACTATATCCGAGTGAGGCTTATAGTAGTGTAGTCTTTCATTCCTAAA 8238 23 100.0 50 ....................... TCTCCTGAGTTGATGACTACAGTTTCATCCGAGAATCTTTCATTCCTAAA 8311 23 100.0 50 ....................... CCGTTGGCTAACTATGCCGGTTAGCACCCCCTTAATCTTTCATTCCTAAA 8384 23 100.0 51 ....................... ATCGTCAAGCGCCCCCTTGAGCTTAGCTGCTTCCTTACTTTCATTCCTAAA 8458 23 100.0 51 ....................... TCAGTATCCCAGATAGTATCCCCGATGTAGTTAGTCTCTTTCATTCCTAAA 8532 23 100.0 52 ....................... AAAAAGAGTCTCCGTATCGGTCTATCGGATCCTCTATACTTTCATTCCTAAA 8607 23 100.0 49 ....................... AAGAGAAAGAAGATTACGTGAATACTCTTGTAATGCTTTCATTCCTAAA 8679 23 100.0 49 ....................... AGCTAGATAAAGCTAGATAGAGCGGGGGGCACCCTCTTTCATTCCTAAA 8751 23 100.0 49 ....................... TAAATACCTAAGTTTATCTTGTTGTAGAGTCTATACTTTCATTCCTAAA 8823 23 100.0 51 ....................... GCTCATCTATATACGTGGGCATACCTAGCTAAGCAACCTTTCATTCCTAAA 8897 23 100.0 49 ....................... TGGATACAACTTTACTCTCCCTACGAACAGATACGCTTTCATTCCTAAA 8969 23 100.0 47 ....................... TCTCTTTCCACTTCCTAATATCTTTCTCAAAAACTTTCATTCCTAAA 9039 23 95.7 54 ................G...... TCCTTTAACCGCCCCTGCTGTTGCGCGGGCAATTGTTGAGCTTTCATTCCTAAA 9116 23 100.0 51 ....................... GAAAACTTCTGGTATTTAATCCGTGAGTTTTAGCGTACTTTCATTCCTAAA 9190 23 100.0 52 ....................... TCTCATGACTAGTACTACCGCTGAATACTCTATCTGGTCTTTCATTCCTAAA 9265 23 100.0 50 ....................... CCCACAGCAGCCGGAAGCTTGGCAGCGGGGCGTTGCCTTTCATTCCTAAA 9338 23 100.0 53 ....................... CAAGGCCCCATCAATTCTGTCTCGATTGAAGCCGAGACACTTTCATTCCTAAA 9414 23 100.0 51 ....................... TTGGCAAGCCTGACCGTATTATGTAGCCTTTGACAATCTTTCATTCCTAAA 9488 23 100.0 52 ....................... TCTTCGGAACTCGGGAGGCGACTGTGCCAGGATTTTATCTTTCATTCCTAAA 9563 23 100.0 50 ....................... CGTTAAAGCGATAGAGAGACATCTATGGAATTTGTACTTTCATTCCTAAA 9636 23 100.0 51 ....................... TTATAGCTTGGGGCAATTATTGGTTTAGTTTATTTTTCTTTCATTCCTAAA 9710 23 100.0 51 ....................... AGGCCCTCCCCCAAACGGGGGCTGTGGTCCCGGCCAACTTTCATTCCTAAA 9784 23 100.0 53 ....................... TTGATTTTCATCTTTATGTAGTTGTGTTCCTTTTCTATTCTTTCATTCCTAAA 9860 23 100.0 50 ....................... AAGCAGTTATTTTTGCAAAAACAACGCAGAATAACCCTTTCATTCCTAAA 9933 23 100.0 52 ....................... TAGTATGCTGGTTAATATTTCAGGTGCCATCGATGGCACTTTCATTCCTAAA 10008 23 100.0 50 ....................... CAGAGCGTGACTGGCGGGAATAACAAGACCGTGCAACTTTCATTCCTAAA 10081 23 95.7 0 ......................A | ========== ====== ====== ====== ======================= ======================================================= ================== 40 23 99.8 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATAATCTACGATTTGCCAGATTCCAAACCGGCAAACAAACGTCGTACCCGCCTGCACAAGTTGCTTTCTGGCTACGGTCAGTGGACGCAGTACAGCGTTTTTGAGTGTTTTTTAACGGCGAAGCAGTTTGTACAGTTGCAGGTACAGATTGAGAGGTTAATTAAACCGTCGGAGGATTCGGTGCGGATTTACATCTTGGATGCTGGTGCGATCCAGAAGACGATTACCTACGGTTCGCAAAAGCCTAGACAGGAAGATGCAATTATCTTATAATGAAAGCAATTTCCGACGAACCTAAGCGGAGGCAAAAACCCCGGGGGGTTCGTCGGAAACGCCAGAACCTAGACAATTCAATCGTTTCAGCAGTTTCAGTCGGAGCTTTGTTGAGAAAAGGGTGCCTTTGTTGCTTCTCAAGAAGCGTTTTTATTGAACCTCGTCGGAACGGGGTCTGAAATCCTTTTATCGCAAGCTTTGCGAGCGTCAGCTCTTTCATTCCTAAA # Right flank : AAGTGGTAAGGGAATAGTACGAATGTTACCATTATCTGGTTTACTCTTTCATTCCTAATACCGTTTCCTGAAAAATCTGCAAAAAATAATTGGGGTCTTTTTGTAGGGACACTCGCGAACCCCCCCTACCAGGGGAATCGGGCAATCCAAAAAAAAACATTGTTTTTCAGAAATGGTATAAATCCAGTTAATCACTCCCTTCAAAACTTTGGTCTAGCCACCAATGAAATTGGGTAAGACCACGAATTAACTCCTGTTGAGAACAAAGTTGCTTTCATTGAAATGAAATCCCTATGGAAAATCAGTTTCATATTAGGTAAAACGCCCTGATAACATCCACTTAGTGGAAAAACTCTTGGAAGGGAAACATTAGATCTACCAATGAAAAATCAGCACCATCACATACCAGATAAAGATGAAAGGACGTGGGCAAGCTTATCGCACCTTGGCTTTATCGCTACCCTAGTGGTTCCATATGGCAACCTGATTGTCCCGCTTAT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9543-9720 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000129.1 Geitlerinema sp. PCC 9228 Ga0115370_1145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 9543 37 100.0 34 ..................................... TTTTCGGTAGAGGAAATACGCTGGGAAGATTTGC 9614 37 100.0 33 ..................................... ATTTGCGTTCAATCTATCGAGCGCTACTTGGAG 9684 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTTCCATCCCTTAGAGGGTTTAAGAGGAATTTCGAC # Left flank : GTGCCCTTTATCAAAAAAAATGGATTTTTGTCAAGCTACCGGCGAAGAGGTTTTTGACTACACCCGAAGAATTGGGAAGCAGCGATCGCGGAGTTGTCGAACGCCAATATGGGACTTTGAAGCTCAGAATTCGCCGTTGGGGGTAATTTTGACAACAAAAACCCATGTTATACCATTTAGATGGTTTTAATATTTTAGCCTATTGGCTGAAAAGACGCAACTCCGTATTTTATTGACATTTATTTTCAACTAAAACAGTCCCCCAAACCGCCAATTTTTTGGAATTTGATTGAAATTGTAAAACTTATACCGGGGAACGATTAGTCTGCTTAAATGCAATTCCCTGCCAGGCAAAATGGCAACTGACATCATCTATCCCAAAATCTTATCCTTTCCTAATGGGAATTTTGCTTCTATTTTTTCCAAACAATATTATCGCTATTTTAAAATATTTTTTTAGAACATGTCCTTGTTTTAAGCAATCAAAATTTGTATTTAAA # Right flank : CCGCGATCGCCTCAAAGCCTTGCGATCTGTAGTTTTCCAGGTTCGATTGCGACATTGAATTCAATTTTAGTATTTCAAAAGGGAAGACCCCCGCCAGCCAAAATCGCCAAAACTTAGACACAGCAAGCTTTCCAGAAACTGCGACGGTGACCGAACACCAGTGAGAAGGTTCCAAACCAGACCCCATGGGAGATTCAGCTGCATTTTTCCGACCGTCAATTTCAAACACCCACCCATCGTCGCACCTCAACCAGAAAATGCCGTATCGCCACCAATACCTTTCAGCCGCCACCAACCAAATCAAATCGAATCCGATCGCACATCGGTTCCATCAACTTCGTCCAGCGCAATTTCTTATATTGTAGCCCTTACCATGAAAACCACAACCTTCAATATCGCTTCTGAGTAAGCACTTCACCCCGACAAACACTTTTCCAACACCAAAAAAGCATAACAATTTTCATCAAAAACGCGATCGCCGTGGTAGCCAACTATCCGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTTAGAGGGTTTAAGAGGAATTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 16841-18238 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000175.1 Geitlerinema sp. PCC 9228 Ga0115370_1202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 16841 37 100.0 42 ..................................... GCTCTAAGGCTTCTTCGATTTGCTCCTTATATTGGACAAGGG 16920 37 100.0 39 ..................................... GTCTTTAAAGCTCTACTGATTCTCGACAGTTCGTTCGTA 16996 37 100.0 37 ..................................... TACAACAACAAACTTTATGTTGCCTGCCGTCATTCTA 17070 37 100.0 40 ..................................... TTCGTCTTTTTCGTCTTCTGGGTTCCAAAAAGAGTGAATC 17147 37 100.0 39 ..................................... TTTGTTTGGTAGGTGGGAACATCACTTCCTTCCCCAATA 17223 37 100.0 35 ..................................... GGGAAATTGGAATTAATTCTATTCCTTGGAGTTGT 17295 37 100.0 36 ..................................... TGATTAGATCAGGTAGAAGCAGAATTTATGTCCTGT 17368 37 100.0 39 ..................................... GAGGGCGGCGTAGTAGCTTGCAATTATGATATTTATTGC 17444 37 100.0 40 ..................................... CCATTGTCGGTTACCAGCATTGGGGATATCTCTGCCCCTT 17521 37 100.0 42 ..................................... TATGTGTTATCCCGCACGTATATTATTTTCTTAGCTCCTACG 17600 37 100.0 45 ..................................... TAGGATTCAAAGTCCGAAGGAGGTTCGACCTCAGTTTTTGCCATG 17682 37 100.0 34 ..................................... TGGCGTTCGCTCGGGCCGCTTAGAAAATTATCCA 17753 37 100.0 33 ..................................... GGAATTTTTCGTCTTCCGGATCGTCGTTAAAAC 17823 37 100.0 39 ..................................... TAGAATAGTCTTGTTGCATGATAGCTCCTTCAAAGCAAG 17899 37 97.3 36 .........................A........... CACTTGCTTTCGATTGCAGAAAGGCAAATCCCTAAT 17972 37 100.0 36 ..................................... AGCGGTGCCCCGTGTCCGTCTCGAACAGAAACAGGG 18045 37 100.0 45 ..................................... CTACCAAGTCCCGATAGGGCTCCTCGGAATATTTGGTTTTTCCAG 18127 37 100.0 38 ..................................... AGATGCTATTTTGACGGCTAAGCTGGGGTTGACAAATA 18202 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 99.9 39 GTCATTTCCTATCTATTCCCCGCAAGGGGACGGAAAC # Left flank : GATTTTTTACCGATTTTCAATGCTGCTAGTTCTCCAGAAGAATTGTACCGCGACCACATCCATTTAAGTCCTGCGGGGAATAAATTGGTGAGCGAGGTTTTGGCAAGGAAGCTACAGTCGGGTGGCGGCAGCTAGGCTATTGGCGATCGGTCAAGTATTGCGTTTTGTTAAGAAACTTGTAGCAAACCTGGGAGGCGATGGAGGTTGCCATCCAGGTGGGGGTTGGTGTGGAGCGATGTAACGAAATGTAAATTTGTACCAACAGTCCGACGCGAAGAGCAAGGGAGAGATAGAAAGAGCAGGCAAGAGCAAGGCGGAGATGGCAGGGATTTTCTTCCTTGACTTCTGCAGAAAATTAGACTATATTATTTCTAACGCTGGATATTCCAAGTTTTGTCTGGCGGACTGGTATCTTGTAAATTTTTGCAAAGGACTACCTACGTGGTCTGGCGCAACTGGACCTTGAAAACCAAATACAGAGCGCGTTTCCTAGGGGTAGG # Right flank : CAACGCCAAATCGCAAATCCTTGACAACAAAACCAACTTGTAACCGCATCCATAAAAAAAACGAGCCGGAAACGACTCGTGGGAAAATTGAGAAAATCTTTCCATCGTTTTTGGGAACAACCAACTTCCTATTGACACACTCACAAAGAAAATTCGTGAGATTCTCGCTTCATTGGGTATGCCTAGATGGATTCGCTATAAGCTAGCCTATCCCCGGCGCACAGGGACCCTCGACGAGCATTTTTCCGTCCTATTTCATCCCTGCTTTAAAAAGTCAGGACTTTCAAGCTCCCGTCTTTTTTCGTAAAAAGCCGAAAATCCCTGAACTCTAGAAACCTAACTCCTCTAAGAAAGCAGCCATACTGCTGAAAAGTTCCTCGCTTTCCATAGAGAACAACTGTTGGAAAAACGAAAGACCAGCATCGCCGCCAACGTCATCAAACGACATGTCGTCGCTTTCCCCTTCACCAGCATCGCCACCACCGTTGGTGACAAAATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTTCCTATCTATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 34103-35728 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000177.1 Geitlerinema sp. PCC 9228 Ga0115370_1204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================= ================== 34103 23 100.0 53 ....................... CCGAATGCATCTCCTTCTCCAAATACATTGTATTTGGAGCTTTCATTTCCTTT 34179 23 100.0 48 ....................... TTAACGTTCACGATTTGCTCGTGTGGCGTTCCTTCTTTCATTTCCTTT 34250 23 100.0 50 ....................... CCGCCAAAAATTTCGCGTAAGCCTCCTTGTTGGCGGCTTTCATTTCCTTT 34323 23 100.0 65 ....................... ATTTGATTTCACTTCAAAATCTTCAAGCCAACCCGCGTTGCGCGGGCGCGACTTTCATTTCCTTT 34411 23 100.0 51 ....................... GCGAAGCGCGAGGGGATACGGCTTATCTGGATAGAATCTTTCATTTCCTTT 34485 23 100.0 50 ....................... GAACCGAACCACCTGTTCTCGATCCGCGGCTTCCTGCTTTCATTTCCTTT 34558 23 100.0 45 ....................... ACGGATGCGACTGGAGAGCATCGCGTTTTTGAGAAAGCTTTCATT 34626 23 91.3 50 TC..................... ACGACGACGGCAGCGATGAAACGCCACCCCCACCCCCTTTCATTTCCTTT 34699 23 100.0 50 ....................... AAAACCTTCTTAACGGAGGACTGTCGAGGGTCTTGACTTTCATTTCCTTT 34772 23 100.0 51 ....................... AATTAATGCATCGTCGTTTCCATACCACATGGCAAAACTTTCATTTCCTTT 34846 23 100.0 49 ....................... ACAGAGGGGCGACCTTTTTTCTATATCATAATAGACTTTCATTTCCTTT 34918 23 100.0 49 ....................... CCTTTCATGGTTTACCTCATTATTTACTCTATTATCTTTCATTTCCTTT 34990 23 100.0 43 ....................... AAGCTCGCCAACAATACCAACAGCAACAGCTTTCATTTCCTTT 35056 23 100.0 48 ....................... GCAACACTGTCCACCAAGTCGCGCCAGGGAAGGACTTTCATTTCCTTT 35127 23 100.0 49 ....................... TCTTCTGTAACGTTTTTCCCACTCAAAGTTCCCCGCTTTCATTTCCTTT 35199 23 100.0 50 ....................... ATGACAAAACGGTTTCCCCATGCTTTTCCTGACGGTCTTTCATTTCCTTT 35272 23 100.0 50 ....................... TCGAGTTTCTGGAAACGAGAAATAGAGCGGGAAAAGCTTTCATTTCCTTT 35345 23 100.0 52 ....................... CTACCTGACCGCAGGTACCTGGATGTCATGTGGGAGTACTTTCATTTCCTTT 35420 23 100.0 48 ....................... TTGTTGGTTCCACCGGTCACTACCTGAACTTTTGCTTTCATTTCCTTT 35491 23 100.0 47 ....................... TATTTTCGCTGCTATTGAATAGAACTCAATAGGCTTTCATTTCCTTT 35561 23 100.0 51 ....................... CACGACTGCCAAAATGGCAGCCCGCCACCTGGAGAGGCTTTCATTTCCTTT 35635 23 100.0 48 ....................... TAAAACTACTTGGAATAATTCCTGCATTTTTCTTCTTTCATTTCCTTT 35706 23 87.0 0 .............AA.......T | ========== ====== ====== ====== ======================= ================================================================= ================== 23 23 99.1 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : ACGCTACACGACTTTCTGAACCAGTTGGGAGCGCAAGGTTTTCGCATCGTAACTGCCGAACTGGAGACTGAGGGAACGTATACACATTTCTATACGATGCAGCGAGAGGTGTTTACCAAGGAAGTGCCAGAGGAAGATATCTATGAAATCCTCGACAAAACCAAGGAAGGAGCGGACTTTGGCGATTCTATGAGACACCTTTTGGAATTGAGTCTGTTCGACAATTTCTAAATTCAGGGAAAAACTAGACAAGTTCCAGAAGCTACTATACAATGAAAACAGTTTCCGACGAACCTAAGCGGAGGCAAAAACCCCGGGGGGTTCGTCAAAAACGCTAGAACCTAGACAATTCAATCGTTTCAGAAGTTTCAGTTAGAGCTTTATTGAGAGAAGGTGCCCTTTATTGCTTCTCAAGAAGCGTTTTTATTGAGCCTCGTCGGAACGGGGTCTGAAATCCTTTCCTCATCTGCTTTGTGAGTGCCAGCTCTTTCATTTCCTTT # Right flank : TAAGAAATTTTTGCCACAGTGTGAGTAATACAATACAATTGCGAATATTGCCTCACTAAAAAAGGCGATCGCGAAGCAATTTTGATTTCCAAATGACCAACCGAACCACCAAGTGAAAACGCTGGTGGTTCAATTTTTATCGCCGGCAAATCGTTAACCTATAAAATCGCTAGAAGCAAAGCGAGTTCTGTACCCGATAACAAGCGTCGCAAAACATAAAACTCACAAATTGCTCAAAGTTCCTCCAAATCGATTGGTAAAAAACTTTGGATCGACCTTGTAACCGCAGGTTTCGCTATCTTAACCAAATGTGGATTCTTGGTTAAAGGCAGGGTACTATTAGAAAAACGTAAATTGACGCACTAGAAGCTACAGGAGGCAGATACAAAAACAGAAAACAACCACCAAACAAGCACAAGTACCATCGAAAGCCGCGATACCAATCGCCTTTGATGAAACTCAGCATGAAAAATGCGATCGCGAAACAGACCAGGCAGAAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 50666-52437 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000177.1 Geitlerinema sp. PCC 9228 Ga0115370_1204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 50666 37 100.0 40 ..................................... AAGATGAGGAGTTATTTTTTGGAACACTTCCTCTTCCTCT 50743 37 100.0 36 ..................................... TACATTTTTCTGGGATCTTCGGAAAAATCCGTGGAA 50816 37 100.0 38 ..................................... ACAAATTTTTTCTTGATTTTCTATTGAAATCTGATGAA 50891 37 100.0 35 ..................................... TTTCGTCCTCATCTTCTGCTTTAAACAGGTCATCT 50963 37 100.0 39 ..................................... TATTCATCTCAGTCTCCAATAATATAAATAAAAAGAAGG 51039 37 100.0 33 ..................................... TTGGGTTTTGTTAGAATCAGAACGACTCAAAGC 51109 37 100.0 38 ..................................... TCGGCTTCTGATACCTCTACCTCCTGCTTTGGATGTTT 51184 37 100.0 42 ..................................... TTACCTACCATGAATCCGTCTACATTTAAAGCGATGTTTTTT 51263 37 100.0 36 ..................................... GGCATCACTCCCCTTAAGGAGTAAGTAATACCATTC 51336 37 100.0 32 ..................................... TCTTGCTTGCTGTAAAAGCCCGTTGCAAGCTT 51405 37 100.0 47 ..................................... CGCTCTTTTCTTATTTGGAAGAACGATCTTAAAATCTCCTTTTTGGA 51489 37 100.0 36 ..................................... GCTTCTTCACTGCGAACGGAAAAAGAATAAGTCGTT 51562 37 100.0 41 ..................................... GGCTCAAACCCAATCGATGTGAAAGATGTTTTCCTTTTTTG 51640 37 100.0 37 ..................................... ATTTTCGTAGGCTATGTTGACTAAATCCAAGCATTTT 51714 37 100.0 40 ..................................... CACCTTTCGCCTGGCCCACGGCCTGGATCGGCTATCACTG 51791 37 100.0 46 ..................................... TTGCAAAGGGGGATGATTCCCCACTTGACTCCCCCGTATGAGGTGA 51874 37 100.0 40 ..................................... CCGATCACAAGCGGCGCAAACCGCTTCTTGCCCTTTTGCT 51951 37 100.0 41 ..................................... GAAACCCGGTCACTCGCGTCTTTCAGGTCGATTGTACTGAA 52029 37 100.0 37 ..................................... GGCGCCACTCTCGTAAGCGGTGATTCCCTGTGTTAAT 52103 37 100.0 35 ..................................... CGTTGTGTTCGGGGAGTGCATCGACCTCAGTAAAT 52175 37 100.0 40 ..................................... AGAAGGTAACCTTTGAATGGACGAAGGAGCCCCTTCCAGT 52252 37 100.0 40 ..................................... GACAATCACAGTTTCCGCATATGGAATATGTTTGAAATCA 52329 37 100.0 35 ..................................... ATAAAACGTGCCTCCATGGACAACAAACAAAGAAC 52401 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 24 37 100.0 38 GTCATTTCCTATCTATTCCCCGCAAGGGGACGGAAAC # Left flank : TCCTGTGGACGCGCCGACGCTGGATAAATTGTTGTCTCGGTGGTTGAAGGTGTTGAAGTTGCCGGAAGATAGTTTGCGCGTTTATCCGTTGGATGCGAAGGCGAAAGCGCAAGCGCGGGTATACGGAAGTCCACCTCCCTACGAACCACCTGATTATTTAATTTTGTAACCAAAGTTGTGGAAATTGAATGCCACTGCAGGCGTTCTCAGCCTTGCCCTCCCTGGCGGAGGGCTTTTGTTTCGGAATGTAAATTTGTACCAACAGTTTGACGCGAAGAGCAGGAAAGTCTCTGTGGGAGGGAGAAGCAGCGAGTCGAATTTTTTTTAGGATTTTTGCCTTGACTTCTGGAGAAAATTGCCCTATATTGAGAGTAAAGCTGGATATTGAAGATTTTATCTGGCGGATTGGAACCTTGTAAATTTTTGTAAAGGACTACGTACGTGGTCTGGCGCAATTGGACCTTGAAAACCAAATATAGAGCGAGTTTCCTAGGGGTAGG # Right flank : CTCTGAATTTTTGGGTCGTAGACTGGGAAAAACTCTTCGTCAAAAGAAACATCGATCGCGACATAGCCACCCTTGGTATCAACCACCTTTCCATCAAACCGTCTAGGAACCTCTACAAAAAACCCCTCGCAAATACAATTCTTGTAGAACTTCCCTGCATGGCATTTCCATAACTGGCAAAATTGGATAAGCAGACTAGAACGAGAAATGTCACCAAATACCGATACTTGGGTATACTTTTCCTCGGAACCAGACATGATTCCACAAACACTCCTTCGTTGGAAGTAGGTAGAAATTTATACTCAGGTCACTCCCTTCATAAAAAAAGCAAACCCCCCATTTGACCTCACCGACCAAACGGACCAATTTCCAAAGCCGGATTTCTCCAGTACCATAAATCCAGAAGCGTGCAACCAGGAGAAAAGACCGTGGATAAATGGATGTTAGCTGCATGGCAAGAAGCGAAAACTGGCTTTGGTGAAGGAGGCATCCCCATTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTTCCTATCTATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 34888-36813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000019.1 Geitlerinema sp. PCC 9228 Ga0115370_1019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 34888 23 100.0 51 ....................... TTCAGTGGACGCAAAAAACCTGGAACCCCGTTACCGGCTTTCATTTCCTTT 34962 23 100.0 50 ....................... ATCAAAACGTTAGCCAAAATAGATAGTACACTCATGCTTTCATTTCCTTT 35035 23 100.0 51 ....................... ATATGATAGTCTTGGCGAGTTTAGGAACAACGTTATGCTTTCATTTCCTTT 35109 23 100.0 51 ....................... TTTAAATGATAAACAAGCACAAATCGATACGATTGAACTTTCATTTCCTTT 35183 23 100.0 51 ....................... TCTAATATTCATTTTCTATTTGCTTTACTTTCGCCCGCTTTCATTTCCTTT 35257 23 100.0 50 ....................... GTCAGAGAGCCACCCAACAAGCGCAAGCGCTTCTTCCTTTCATTTCCTTT 35330 23 100.0 50 ....................... AGCTTTTCACTCAAGATAATAGAATTGTCTTGGGGGCTTTCATTTCCTTT 35403 23 100.0 51 ....................... ACAACTAACGGGTGTCTAGCGTGCTTAGGACCACTTTCTTTCATTTCCTTT 35477 23 100.0 49 ....................... TAGCAGAATCTTTTAATGACTTAACTGCTATTGGTCTTTCATTTCCTTT 35549 23 100.0 47 ....................... ATAACCTGCTAATCCAGACAGCAAAACGTCTGGCTTTCATTTCCTTT 35619 23 100.0 50 ....................... AATTAACAGGCACTAGCCGAACAGCTTTCTATGCTTCTTTCATTTCCTTT 35692 23 100.0 49 ....................... GTACACCGATATCCCACGGAAAAGGGTGGTAAGCCCTTTCATTTCCTTT 35764 23 100.0 50 ....................... TTTTAGCGATGAGTTGGTTTTCAAACTGGGTATCTACTTTCATTTCCTTT 35837 23 100.0 50 ....................... GTTCATTTCCCGCAAATCACAACGATGGTGATTGTTCTTTCATTTCCTTT 35910 23 100.0 52 ....................... TTTTACAGGGGTTTAGTAACGCGCCTCGGACCAAATATCTTTCATTTCCTTT 35985 23 100.0 55 ....................... AAAAAGTCAGTTTTGGAAACAAACCGCGAGAAGTTTTTGCCCTTTCATTTCCTTT 36063 23 100.0 52 ....................... AACGACTGAGTCGCCACTATCGAAATATTTGATTTCTGCTTTCATTTCCTTT 36138 23 100.0 51 ....................... AAATAACCAAGACAGAAAGTTTTCCATTTCTTCTTCTCTTTCATTTCCTTG 36212 23 100.0 49 ....................... TCCCACCCGTCGTACCAACAATCCTTCACAGCGGTCTTTCATTTCCTTT 36284 23 100.0 47 ....................... TTTATTTCTTTTAAATAGGTATCCAAAGCCCGGCTTTCATTTCCTTT 36354 23 100.0 51 ....................... ACTTGTGGTGCCTTTCACCTCAACATCTACTTTTGGTCTTTCATTTCCTTT 36428 23 100.0 50 ....................... AGGTCTTTGGCGATTCTGAATTCTCTAATCAATCTTCTTTCATTTCCTTT 36501 23 100.0 49 ....................... ACCAAGCAAGCGCTAAACCGCAAAACGCGCTTGATCTTTCATTTCCTTT 36573 23 100.0 51 ....................... TCTTCCTTTAGTAGGAAGCACCCAATAGTACTCGTCTCTTTCATTTCCTTT 36647 23 100.0 49 ....................... TCTCTCTAAGCTTGCGTGCGATCGCCGCACTATTTCTTTCATTTCCTTT 36719 23 100.0 49 ....................... AAACAAGTGACCGCACCAACACAAGCCGAAGTTTTCTTTCATTTCCTTT 36791 23 95.7 0 ......................A | ========== ====== ====== ====== ======================= ======================================================= ================== 27 23 99.8 50 AATCCCCGTAAGGGGACTGAAAC # Left flank : CGGGGAAGTTGGTGTTGCATTCGCAGGCGCAAGAGGCGATCGCGCAAAGTTGGCGTCGCTTGGTGCGGGATTTGCGGTTGGTGGGAGAGGAGGCGAATTTGAGCAAAAGGGAATATCGGATGCGAGAGTTTTTGTTAACCCATCTGGAGGAGGAGCAACGGACGGAGTATTTACAATTGTACTGGTTGGTGGTGCGGGGATTGCGGTTGTGCGATGGGCGATCGGTGAGCGATTGATTTTTTCTCTAGACAGACAGGGATGGTTGTCCTATAATAAAAATAATTTCCGACGAACCTAAGCGGAGGCAAAAACCCCGGGGGGTTCGTCAGAAACGCCAGAACCTAGACAATTCAATCGTTTCAGCAGTTTCAGTCGGAGCCTTGTTGAGAAAAGGGTGCCTTTGTTGCTTCTCAAGAAGCGTTTTTATTGAACCTCGTCGGAACGGGGTCTGAAATCCTTATTTCACAAGCTCTGCGAGCGTCAGCTCTTTCATTTCCTTT # Right flank : GTTGTTTCGGCAGGTAATGAGAACTTCCTCAGCAGTTACGAGTGTGAGTCAGGAGTTTGAAAGCCCTGACTTTTTAAAGCAGGGATGAAAAGCGACCCGTGCGGCTTTAGCCGCCGTCAAAATCAAGTTGATGTGCTAGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1181-1466 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000005.1 Geitlerinema sp. PCC 9228 Ga0115370_1005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ================================== ================== 1181 47 93.6 34 ............G..........C...............G....... ATAGCCACCAAAGATGCAGGCTGAACTACCCACA 1262 47 95.7 33 ............G..........................G....... TAGCCAGCAAGGATGCAGGCTGAACCACCCACA 1342 47 100.0 31 ............................................... ATNNNNNNNNNNNNNNNNNGAACCACCCACA 1420 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ================================== ================== 4 47 97.3 33 GATCGCTTTCTGAGACTTTCTAGGGGCGATCGCGAAAACACAGACAA # Left flank : ACCGGGGTGAAAGGCAGTGATTTGGTTGTCATCCAGGTCGGTGGTGATGAATGCCTGACCGGTGAACTCACTGTCGATTTTCTTGATATGATTTTGCGGGATGCCGTGTTTGTCCAGCCACTCAGCGTAGTCCCCAAAATCGGAGCCAACGGTGGCCATGGGCAACGGCGAACCTCCGAGTAGTTTGAGATTGTAAGCGATGTTGCCGGCGCAGCCCCCGAACTGGCGTCGCATTTCGGGAACCAAGAAAGACACATTCAAGATATGTACTTGGTCGGGCAGAATGTGATTCTTGAATCGGTCCTGAAAGACCATGATGTTGTCATATGCGAATGAACCGCAAATGAGTGCTGACATAACAGAATCGGTCCTCGTTTCGTTTTAACTTTATCGTGCGACTGCTACTGTGGAAAATCCCCGGCAATTCAGCCAAGTTTGGCTTGCAGGCAGTTTCCGGATGTTCCAGTCGAGCAGCAGAAAACCTATTTTACCATTTTTGC # Right flank : AATAGCCAGCAAGGATGCAGGCTGAAAACCCCTACATACCTGGGCGTTGTATCTTTTTTCGATTTCCCGATTGTGGGGAATCGTCTGCCGAAATCTGAATCTAGAACAATGGCGTTGATTTTGTCAAATCGGGGAATAGATTGTCTGGCTGGGAAGGTTCTATGGCAGCGATGGTTTCTGATTTGAGTCTTTTTCTGGCAGGCAAACGGACCAACCAATTTAAAATTTTCAAAAAGAAACCGATATTTGGCAGGTTGTTTGTGGTATGCTTAAAAAAGCAAGTTAGCTGGTTGTGGCTTTGTCGGCTGGCTGCGTTGGCTGTTGCCTTGGCAAAACGATTCGCAATTCTGGGTAAGTTCTTATGGAATGGGACGGACAAAGAAAAAAGCAATTTCGCGAGGCATTATGTCAAGTTTATCCTGACCCAGGCGATCTAGAGATATTTGTTGAAGAGGATTTTGGGGAATCTCTGGCGGAAATTACTACAGAAAACAATCTCC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGCTTTCTGAGACTTTCTAGGGGCGATCGCGAAAACACAGACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [19,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 16016-19455 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000068.1 Geitlerinema sp. PCC 9228 Ga0115370_1078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16016 36 100.0 40 .................................... AGAGCGGGTCCGATATTGCACCGGGTCGGCTTTGTGTTGT 16092 36 100.0 38 .................................... GAACTTCTATTTGAAAATTGAAGCCGAACAAGGATAGA 16166 36 100.0 35 .................................... ATTTTCTGAAAACTTCTCCACAGACGCTATTGCCT 16237 36 100.0 37 .................................... AATGCGATCGCGATATCCCCACGGGAGTAGTCCCAAT 16310 36 100.0 37 .................................... TCTTTTCTTCTTTCTCTTTTTCGGGCACGTCAGATAT 16383 36 100.0 34 .................................... CCGAAGAAAAAATAGAGCATTTCTTCGGCTAATC 16453 36 100.0 37 .................................... ATTGCATAGGGATTATTGACGAATATTCGCAGTCACT 16526 36 100.0 38 .................................... TGGTCAACCCACCCCTAAAAAACAAATCTTCTTCAAGA 16600 36 100.0 34 .................................... GAAGGTCATTTTGATATTGACTTAAAAAAAGAAA 16670 36 100.0 35 .................................... TCTGGTATTTCTTGCCTAGAAACGGCGCCACCAAA 16741 36 100.0 38 .................................... TTGGTGCTGTTTATGAATACTCTTATCGGCAAGAGAAT 16815 36 100.0 36 .................................... TCATTATAAAGATAGTCGTTTAGTCGTTAGCAAATC 16887 36 100.0 38 .................................... AGACTAGTAAAGCTAGCTAACTCCCTTTGCGATAGGAG 16961 36 100.0 40 .................................... ATGAGTGGATTCGATGGGCACGTCCCGTTTGGTACTCCAG 17037 36 100.0 40 .................................... CCCAAGAACTTGCCCAAGCCATCCAAAACGAAGGGGGTAA 17113 36 100.0 36 .................................... TAGCGCATGGCTCCCCCTTTTCGGTGGGAATCTCAT 17185 36 100.0 35 .................................... GAGCTTTGTAAGTTATCTGCAACCAAAGAGAAGCA 17256 36 100.0 35 .................................... CAAGAAGGAGAAGAATTCGATGTGGAGATTTCAGT 17327 36 100.0 36 .................................... AGTTCCCTCTAGATCGGGAATGCGAGTCCCACAATG 17399 36 100.0 35 .................................... AATACAATTCCAATTAGCAAACCCTTAGTCCACAA 17470 36 100.0 35 .................................... TTGAACATGGTTTTCGCTCCTGGGTGGTGAAAAAC 17541 36 100.0 36 .................................... GTTTCGGAGTTGAAGAAAAATAATGAAAAACAAAAA 17613 36 100.0 36 .................................... GTCTCTCCATTCTTCAGAGGGAATAGGGGGAAGATA 17685 36 100.0 38 .................................... TATCATCAACGTATACCTTAATTTTCAGAGAATTGGCA 17759 36 100.0 37 .................................... TACTCGGGTAAGCGGGACGCGTCAATACTTCCAGGGG 17832 36 100.0 37 .................................... TGTTCGGAGTGCAGGTACAGGTTAATATTGCTGAGTT 17905 36 100.0 35 .................................... TGGAAAGATTGAGTGTATGATTTGCTTTCCTAGCT 17976 36 100.0 35 .................................... AAGACTACGAGAGGGACGATCGCAATGGGTGGGTT 18047 36 100.0 39 .................................... TATTAGGAGAAACCACAATCCTAGCACTAGAGTCCCCAA 18122 36 100.0 39 .................................... GCGGATTCGCTCGTCGGAGGATCGAACCAACTTTCACTA 18197 36 100.0 38 .................................... TTCCAAGTATTCTACTGAAAGTCCTCCCTTAGATGTCC 18271 36 100.0 34 .................................... GATTTCCATTTCCCCTCAAGAGTTCTGGCAGAAG 18341 36 100.0 34 .................................... AACCTGATAGCTCCAACTGTAGCCCGTCCCCAAG 18411 36 100.0 38 .................................... TCTTTCCCAATAGCAGGTATCGATCCAGGGAAACAAGG 18485 36 100.0 35 .................................... CCCTTGCCGCTTGCGCTATCTCCCCATCCGATAGA 18556 36 100.0 35 .................................... AGCAGGACAGTGCGAAGTTCTTTCACAGGGGCTTC 18627 36 100.0 34 .................................... ACACCACCGGATACGGTGTAGTCCTTCCCCTCGA 18697 36 100.0 36 .................................... CTATACCAGTATCGAATCCAAACAAAAGCGGAATTT 18769 36 100.0 37 .................................... AGACGATCCATCTTTTTCCTGAAAGCAGGAATATCAT 18842 36 100.0 36 .................................... CCCAAATTGTTCCGATCCTCTGGGGAGAACGGTTCT 18914 36 100.0 38 .................................... TACTCCTCTTTATTTTCCCACTTCTCCACCGGAAGGCG 18988 36 100.0 35 .................................... GAAATTCCCACCGCTGATATCTCAGTGGGTGAACG 19059 36 100.0 37 .................................... AGGGGGAATTAATCGAACTCCCCTCCGAACTCCAAGC 19132 36 100.0 37 .................................... GATTCAAGGAATTTCAGAGGAAGATTTCGCCAGAGGA 19205 36 100.0 35 .................................... AGTTTTAGAAATCGTGAATCCTAGTAAAAGCCCCT 19276 36 100.0 35 .................................... CAGTAATTGAAGTTGCGATCGCACTGGATAGCAGG 19347 36 100.0 37 .................................... TGTTTAAGTTTGCAGTGTTTAAACATGCCCTTGCGTT 19420 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 48 36 100.0 36 GTGTCCAAACCTTAGATGCCGTCAGGCGTTGAGCAC # Left flank : AAACGCTGGCGCAAAGCCTACAAACTGTTGCAAGGGTATGGCGAACGGTTGCAATATTCGATTTTCCGCTGCTGGTTAAACCAACGCACGCGCGAGAAGTTGCGCTGGGAGTTGGAGGAAATTTTGGCGGCTGAGGATGATGTGTTGTTGATTCGCCTTCCCAATCAATGCGTGGCTAGCTTACCGGCGTACAATCGCCCGAATGCCTGGCCAGTGGAAGGTTCTGGTTATCGAATTGTTTGATGGCGATGCAAGCACCTGCGATTGTTAAGGTACGTTTTGGTTTTGTAGCGGTTCCAAGGTTTGTGGTTTCTGGGATGGAGAGCGATTGGAGGAGAGGGAAGATGCTTGTCAAATGCTATATGTCGCTTTTGGTAAGGGTTTTGGAAGTTGCGATCGCTTTTCTATTCCCTGGTTTGACACTCGTTTCCGCACGCGATCGGCAGGTGCTTGTAAAATTGAACCAGAGCGTTTGTACGGTAATGGTTCCAGCCACCGCC # Right flank : CTAGTTCCATCAATTCAATACAACCAACTTCGATACTCCGACGTTGCATCTTTCATATCCTCATAAAGCCAAACCATGCGATCTAAAAACCAGAACTTGCCAAGATTGACCAAACAAACTCCCAACAAAACACTCCAAAGATGAAACGCCACCAATCCCCAAATCAGAAATGGCAATCCCAACGCCGAAATAAGATTGAGAATGTGAGGAACGCGGCGATGGTGCTGGGGAACGGGAACGGCATCGCGATCGCTCCATACACGCTCCCCAAGCACTGCCTTAGAAGCCCAATGATTCGTAGAAGCGGGTTTGGGAAACAAACGGGGATTGACCCAAATCCAGAAAAGCGCGATCGCAACAGGTACCAACGACCACCATCCCCACCACGCACGACTCCAAACCGCCACCACCAGCAACGGCAGAGCCGCCGTTCGACTCCAAACGCTCCCAGGATGGGCATGACGCTGCCATACCTCGTCGCTCATGCGAAATATATTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCTTAGATGCCGTCAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 36571-37832 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000076.1 Geitlerinema sp. PCC 9228 Ga0115370_1086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 36571 37 100.0 36 ..................................... TTTTTTGTGTAGTTGTCGCATTGCTCTTTCTCCCTA 36644 37 100.0 34 ..................................... GCCCCCAATAGGTTTCGCCAGTGGGCTTACAGCA 36715 37 100.0 34 ..................................... AGTTCGGCAATGGTGGTGGTGGAAACTTCATCCG 36786 37 100.0 37 ..................................... TCGCTGAATGCAGGATCTTTCGATATTGCCGCTACAA 36860 37 100.0 36 ..................................... GTAGGGGAATCGCTCTTTGCGATCGCCCCCACCAGG 36933 37 100.0 34 ..................................... TTTATCGATGACCAGCAGGACGGCTGGAGTATTT 37004 37 100.0 36 ..................................... TTGATGTATCAACCTAAAACAATTTTTCCCGGTACT 37077 37 100.0 34 ..................................... ACATGACGAAAACCAAAATGACCGAATCAAAACA 37148 37 100.0 33 ..................................... TTCATCCCCAACGGCGATTACTATGTAGTTTAT 37218 37 100.0 34 ..................................... CTACTAGCGGGAAATACTTGTTTCACATCATAGT 37289 37 100.0 34 ..................................... TTCAATAGTTTCTTTGTTTCTTTTTGGTACATTC 37360 37 100.0 36 ..................................... TCAAGATACATACACGAAGAATTAAAACCCAACATA 37433 37 100.0 35 ..................................... TTCTCCTTTCCCTGCATACCCGCAGGATATCCATA 37505 37 100.0 37 ..................................... ATTAGTGGTTGGTGGCTCGATTGGTTCCCGGTTTTGG 37579 37 100.0 33 ..................................... TTAATTCCTAGTTAGGTGGTAAACCGACCTGGG 37649 37 100.0 37 ..................................... TTCTAGCCAATCTACTAAAGCTTCGTTGTCGCTCCCC 37723 37 100.0 36 ..................................... CGCATTGTGGGAAAGAAGCGCACCTGCACCCTTTTG 37796 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 18 37 100.0 35 GTCGAAATTTCTCTTAACCCCTCTAAGGGATTGAAAC # Left flank : TTCAGAGGACAAACGCCGTACTAAAATTCACAAGGTTCTGAAATCGTACGGACAGTGGATGCAGTTTAGCGTGTTTGAGTGCGATTTGACGGCTACTCAGTATGCGAAATTGCGATCGCGTTTGGCAAAACTTATTAAACCGGAGTGCGATAGTATTCGATTTTATTTTCTCTGTGGTAGCTGCCATGAGAAGGTGGAACGAATTGGTGGCGAACCGGTGCGCGACGATACGGTGTTTTTCTGCTGAGGTGCGACGATGGGTGGGTGTTTGAAACTGATGGTTGAAAAAATGCAGCTACATCTCCCACGGGGTCTGGCTTGGAAGGTCTTTGTCGGTTTCCGCTCACCGTCGCAGTTTCTGAAAGGCTTGCTATGGTTGAGTTTTGGCGATTTTTGTTGCTGGGGGTCTTCCCTTTTTGATGGCTCAAATGCTAGAATTAAATTCAACGTCGCAATCGAACCTGGAAAACTACATATCATAAGGCTTTGAGGCGACCGCC # Right flank : CTGCTGGGGGGATTTTTCTAGGGTTTTTCTTGACATTCAACACTTCTGTAAGGGGGGTAATTTTGTTTATAGGATTCTTGTCTAAACTATTCTGTCTACCTTTTTTGTTAGTAGTTTCGATTTTTTATGGTGCTTTTGTTGGTTGGTTTACTACTCTAATTGTACAAATAGTGATTTTAATCCCATTAATATATATTTTTCCATCCCTTGAAGAGTCCTTAGTAGATTTAGTCGAACCAATGTTTTTCACAGTGTGGGTTATAGTGTCTACTTCCATTTTCCTATCTTACTTGCTTGCTAGCGAAAAGGAAGAATTTGTGGGATATTTTTCGTGGATAAAAATTAATAGTTAATAGGAAAGTTCTCTTACCTACCAACGTGCAGGACAAATAAAAAAGTCGAAATTTCTCTTAACCCCTCTAAGGGATTGAAACAAAGCGCGTGGTGCCACAAAATCCGCTTTTATCAGGGTGTCGAAATTTCTCTTAACCCCTCTAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAATTTCTCTTAACCCCTCTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 16258-18544 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000098.1 Geitlerinema sp. PCC 9228 Ga0115370_1111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================================================== ================== 16258 37 94.6 159 ..........................TA......... TCTGATACCATTTCCTTAATAATATGCAAGAAATAATAGAGGCATTTTTGTAGGGGCGCTTCGCGAAGCGCCCCTACCAGGGCAATTGGAAAATTCCATACAATCGTTGTTTTTCAGAAATGGCATGAGATAATCGATTATGTCTTATCACTAGGATAC 16454 37 94.6 36 ..........................AA......... CTGCCTAGGGGCTGTATTGGCTGTGGGCTTTCGGGT 16527 37 100.0 37 ..................................... ATTGTGGAATTCTGGATAAAGCTGCAAGAGGAATTCA 16601 37 100.0 37 ..................................... CTTGAAAGTAAGCGACGCGCAAAAAGCTGCAGCAATC 16675 37 100.0 36 ..................................... AGAAATTAATGAATATTATTTCGAAAATGGTAGCTG 16748 37 97.3 41 C.................................... CTACGAGCCAAAAGAAGTGGGCGCAAAAGCTTCTCCAGATA 16826 37 100.0 33 ..................................... TCTTTTTATGGCTGGAATCGTTAACGCGAGAAA 16896 37 100.0 38 ..................................... AAAGCCCAGAAGAAATCGGGAGAGCTTTGCGCGAGCTG 16971 37 100.0 35 ..................................... CTGATTCAAATCAATCAGAGGGAGTTCTTTGGTCT 17043 35 94.6 35 ............--....................... CTTGTTTCCACGCCTATCGTAATAGGTGTCAACAG 17113 37 100.0 35 ..................................... TTGAAGGGCGGATGATCAAGCAGGCTAAGTATGAG 17185 37 100.0 39 ..................................... TCAAGCCTTGGGAAATAGGGGTGAGAATTTGTATGGTCT 17261 37 100.0 34 ..................................... GATGCTCTCGCGAAGCCTCGCCCAAACTCTAGGG 17332 37 100.0 36 ..................................... AGCAGCGAATCGATCGCCGGCGACGACAAAGATTCG 17405 37 100.0 35 ..................................... ACCCGCCCAACCCCTCCGGGAAGTCGCGGGTCCAG 17477 37 100.0 35 ..................................... AACCGGCTTGCCAAGCGGACTTGGAAGGGGCTTAG 17549 37 100.0 37 ..................................... ACTCTTCAGCTTCGTTCCAGGTAGCGAAGCTTCCAAA 17623 37 100.0 35 ..................................... CGCGCGGGGTCAATTTTGAATTATATAAACTTGAA 17695 37 100.0 35 ..................................... AGATTCTTGGCGGGGGGCAACTTCCGCCCGGCAGC 17767 37 100.0 35 ..................................... CTGATTCAAATCAATCAGAGGGAGTTCTTTGGTCT 17839 37 100.0 42 ..................................... AATTGAAGCCGAACAAGGATAAAAAAGCCAGGAAAGCCAAAA 17918 37 100.0 41 ..................................... CTGGCTCCCATTCGCGGGCACGCTCCCGATATTGAGCTAGG 17996 37 100.0 38 ..................................... CCAACTGCCCTATACTTTACTTGCATTGACCCAAGTGG 18071 37 100.0 35 ..................................... AATTTCCCCAACTGCTTGATATTTCACTTCCATCG 18143 37 100.0 35 ..................................... CCAGAAAAAGCTTCTTTCAAGCGAGGTGCAGGGAT 18215 37 100.0 37 ..................................... GGCTAGGGGGCGTGAATGGTCCTATATATATTATTAG 18289 37 100.0 33 ..................................... TTTTGGGCAAGGTTCCTTTTTGCTTCAATCCCT 18359 37 100.0 34 ..................................... TCTCTTTTGTTGTACCGCAAGCTGCTAATACGTA 18430 37 100.0 41 ..................................... TGAGACAGGGCAGCTGCTTTCTTTAGTCCCTCGACTATTGT 18508 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================================================================================================================== ================== 30 37 99.4 41 GCTTCAATGGAGCCGCGAGTGAGAGTCGCGGTGAGAC # Left flank : GATATGAGGAGGTGCGTTTGCCGGTTGGGTTGGTGGCTGTCGGGGATGCGGTTTGCGCGCCATGTCCTTATTACGGTCAGGGCATGACTATGGGGGGAATATCCAGTATGGTTCTGCAAACGTGGCTGCAACAAGAGGCTAGTAAGGATAGCGAACAGCGATTTGTTTCTGAAAGGTTTCACAAGCAATTGGCGAAACGGTATGCATCCCCTTGGTCGATAGCAACGCAACAGGATTCTCAATTTACAACGACGCAAGGCGCGATCGCATTTGATTGGTTTTCTTGGTGGTTGAACCAATATATCAATTGGGTGGCGCGACAAGCCCATCATGACGCGCAATTTCATGCTTATTTAATGGGTGTTCATCAAATGGTACGCTCTCCGGTTGCTCTATTTCATCCTTGGGTAGCTTTCCAAGCGATGAGGAATCGTATGAAAAAGTAGGGATGCTTCGCGAAGCGTCCCTACCAAGGAAATCGGGAAATTCCAAATATTTCA # Right flank : CGGCGGGAGCGTGAACCCCTTACCACAATAGCATTTCAGAGCCCGATTGCGACGGTGAAACCAAAAATTGGATTTCAGCATTCGTTCCATCAAAAAAAACTCCAGTCGAAAATTCCAAAACTCGCTCCTGACAAAGCTTTCAGAAATTGCGACGGTGAAAAATGGCTGCATTTTTCGCAAACGCCCACCCCGCACCGGATTGACCCTCCTCTCAAACATCTCCATTTCAAACACCTACCCATCGTCGCAGCCATCCGGTACTGGCATAAAAATTCCCAAACCAAAATGGGCAGCATATCCCAACGCCATCGGTCCCGATTGCCGATTCTCAAATACTAGCTCAAAACCATACGCAACGTCTCGTCCCCTCCTCCCCTTTCCTCTTTGCCGCCAACGTCGGAACTGCCACCAAGGATAGGAATATCGTTCGCAAGCCTCGGCACCATCAATCGGACGCACTTCCGTTGGTTCGTCAAAACCGTGGTATTTTAACAACTTGC # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGAGCCGCGAGTGAGAGTCGCGGTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 80255-80076 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDC01000098.1 Geitlerinema sp. PCC 9228 Ga0115370_1111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 80254 32 100.0 42 ................................ ACAACTATGGCTGGTATTAGGCAGTTACTCTTTATGTTGGTT 80180 32 100.0 41 ................................ ACATGTGGAAGCACTAGCCACAGCACAAAACTTAGTAGGTT 80107 32 96.9 0 ............................G... | ========== ====== ====== ====== ================================ ========================================== ================== 3 32 99.0 42 TCCTATTAATGAATCCCGGCAACGGGATTGAA # Left flank : CCCTATTATTGACTTTCTTCTAATTCGCTATAGTTTTTGTATGCTTGGCGAAGTTCGGCAAGAAATATTTTTGACAACCAATCTGGTTCTAGAACTCGAACATTGGCACCGTATCGCAAAAGACGTTGCCGCAGCCAAAACACGCAATCCTCTTTGGTAATAATTTCTACACAATTGCGATCGCGATATACCTCGGATTCGCTACGGCGACGGGGTTGGTAATGGCGTAGCGGTCCGCTCATACGATAGCGTACTTCCATGGTGGGAAAATGGAAAACACACCAAGGCGTTTGGGAGGATCGAACGGCCAACCAACATTGCTTTTCCAAGTGATGCTAGATGCGGGCGTTTTGAAGCCAACCTTAACCGGCGGCTCTCCCAAGTCTGGACAATGAAGAAACGATAATTCTATAATTGGTCAAACACACATTTTCGAGGCATCCCTTCAGATATGGGAATGCAAAGCTTCTTGCTATATCTGATTTTTGGGCGATGCCGTC # Right flank : GCCACTCAACTTCCACCTAAGCTGTAGCCACTGCCAGGTATTTCCTGTTAAGGAATCAATATCTCAAGAACCAATAATGTCCCCAAATGTAAAAGAATGTAAAAAACTGTAGCCCGATCGCTGCAATAGATCGGACAATAATAAGGTTGACCGATATAGGACTCGGATCGCACGAATTCATTTTCATTGGTATGTTCGAGCAAACGTTTAAAAATATTGATGATGCGCTCAGGCAAGAGGCGGGCTGTACGACCGAACTCGACTATATTGAGCAAACATCATGGCTGCTGTTTTTGAAATATCTTGACGATTTGGAATCTGAGGAAGCAGAAAGGGCAGAATTAAGGGGACAAGACTATCAGTTTATCCTTGATGAACCCTATCGCTGGTCGGCATGGGCTGCCCCCAAGCGGGAAGATGGGAGACTGGATGAAGATCGCGCCTTGACCGGCGATGATTTGACTGCTTTTGTCAATAACAAACTGTTCCCCTACCTGCAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTATTAATGAATCCCGGCAACGGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //