Array 1 70409-72267 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG697148.2 Jonquetella anthropi E3_33 E1 Scfld1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70409 29 100.0 32 ............................. GTCTATGACTGGGTTCGTCACAAAATCGTCTT 70470 29 100.0 32 ............................. AAGGATTACAGTTCGATCAACGACGCGTTAGC 70531 29 100.0 32 ............................. AACGTATTATCTTCGGCATGACGGACCAGAGC 70592 29 100.0 32 ............................. ATTTGATCGGCTTCTGCCATGGCCGCCAAGGT 70653 29 100.0 32 ............................. GAGGACAAGTTCGCTGTCGCTGGGAAATTGAT 70714 29 100.0 32 ............................. ATTTGATTAGCCACGCGCTGGTCCTGTGTAAC 70775 29 100.0 32 ............................. GCCTAAAGCGTTTGCGACTGTGGCCTGATCAA 70836 29 100.0 32 ............................. GTCGAAGATCTGCAGTTCGATGACGCAGTTCT 70897 29 100.0 32 ............................. TTGAAGGGTCTGTTTCGCTTGGTACAGATTCT 70958 29 100.0 32 ............................. TCGTCGAAGCCCCACAGTCCCTTTAGCTTCTC 71019 29 100.0 32 ............................. GATACGCAAGACGGGCGGATACGGCGCAAGGG 71080 29 96.6 32 .................A........... ATGCCGAAGCGAAAGATACCACCACTGCGTGC 71141 29 100.0 32 ............................. GAAGCGCGCCATTCTCGGCCCAGTGGGGAGCG 71202 29 96.6 32 ............................T TGATTGGCGGGCTAAGATCTGGCGCATTGACG 71263 29 100.0 32 ............................. TGGGAATAAGCGCCGTCTCTGTCGGCCATGAC 71324 29 100.0 32 ............................. AGTGGGCAGGAATCCAAGCCTGCTGCGGTCTC 71385 29 100.0 32 ............................. ATGTCGGCCGACTTGAGCCTGACGTCATCGGG 71446 29 100.0 32 ............................. TTGTCATCAGCGCTGAACCCGGTGACCTGATC 71507 29 100.0 32 ............................. TCGAAGGGGGTAAAGCCGATGAGCAAACAGTC 71568 29 93.1 32 .........................T..T AGTCAATCGCGCGGCGTTTTTGCGGGCGATTG 71629 29 100.0 32 ............................. GCGCAGGTAGCAGCCTGCTGGAAGGAGTAGAT 71690 29 100.0 32 ............................. GCACTGCGGAACGCCAGTCCTTCGCTGTCAGC 71751 29 100.0 32 ............................. AACTCAAGTCGGAAGCGGAGCGTAAGGGAGTG 71812 29 100.0 32 ............................. TGCCCCTGCTCGCCCGCACCGGTCTTGGACAG 71873 29 100.0 32 ............................. GCTTCATGGCTTTCGCGCAACAGCCAGCACCC 71934 29 100.0 32 ............................. ACCCGGAAGAGCTTTTTAAGGCGCGCCGGCAG 71995 29 100.0 32 ............................. ATGCATGTGTGGTGTCTTCTCATCAAAGTGTA 72056 29 100.0 32 ............................. GGGCCATAAATCATCCTTCGCGCGCCGGGGAC 72117 29 96.6 32 ............................T TGATACCTTCTGTCTCTGACAACTTGATAGAC 72178 29 100.0 32 ............................. GCCACGGCTGCGGCTAGGCGGGCCGGGTTCAG 72239 29 82.8 0 ...GT......T..............TT. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 CTGAGCTCCACGCAAGTGGAGATGTCCCC # Left flank : GGCAAGCTACCTCGAAGAGCCAGGGATGGACTTGGAGCGGCACGTTCGAAAACTCATCGGACAGGAGCTGTACCGTCAGAAAGTCATTTCAAAAATGATTGACCAAATCAAAGAATTGATCCTGCACGGTCAATCTGACGAAGCACTGGAAGAAAAATCTCCATGCTGGTACTGATAACAAATCAGGTCCCAATGAGAGTTCGAGGCTTTCTTGCTGCCTGTTTATTAGAAGTCGCTCCGGGGGTGTACGTGCACCCGAGAATCAACGCTGGCGTCAGAGAGCGCATTTGGAAAATCATGACCGAATGGAGCGTAGAATTTTCGCAGGAAGCTTCTGTGCTCGCCCTTTGGCCGGCTCCGAAAAGCAGCGGCGGCATCAACATTCGGACGATCGGTATTCCTCAGAGGACGCTGATCGATTATGATGGACTCGTGTTAAGCAAACTAACGTCAGCAGACACAAAGGCATTAGAAAGCTAGGGGATAGTACAAATGGAAGA # Right flank : CGCCTCAGCAGCGACCAGACGGGCAGGGTACAGCTGCCCTCCGGCGCGCGGAGGCGATCCTTGGCTCGGCTCCGCTTACGGCCTGTTCGACCAGTCATTCGTTCAGGGGCTGGAACGCTCCCCGGGCTGGACACTGGCCTCTTTGGCGCTCGGTTTCGGCGGTGCTTTCGGACGTTTGGCGTTCAGCTCGATAGCGGCCCAAGGCGGCCTGCGGGCGGTCCTCACTTCCCGAGCCCTGATGGGCGCCGCCGCTCGGGGCTTTGTCTCGTCAGCGAAAAACGACTTCTGGACGCTCTCCGGACAGGCACTCATCAACAGCGCGACGTGGGCGCCCCGCCTTGGCTCGGCCGAGTACTTCTGGAAGAACTCGGTCGGCTCGCTCTACCAGTCGATGAGCGACCTCAAGGGACCGGACGGAAAGTACCTCGACCCCAAAGTGGCTCGGGCCATGGCGACGGGCTTCGGCTCAATCGTCGCGGCCATCGAATACATGTCCCTCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCTCCACGCAAGTGGAGATGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 1695-1465 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG697147.2 Jonquetella anthropi E3_33 E1 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1694 32 100.0 33 ................................ TATGTTACTTTCTAGGTCTAAGCTCCGCTTAAA 1629 32 100.0 35 ................................ CCCATTCGCGGATTGCGAGCTCGGCGAAGCGGATT 1562 32 100.0 34 ................................ TGCCACGCCGGATAGGCGCGAACAGGCTCGACCT 1496 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : AAGGGCAGAAGACCGAGCTTGAAAAAGCGCAGACGGCACAGTCAAAAGCGGAGGCGAAAGCCGCTGAGCTCGAAGCGAAAATCAAGACGCTGGAACTGAACGCACTGAAGTTGAAGCTCGCTTCCGAGGCAGGATTGCCAGCCGAACTTTCCGACCGCATCCGCGGTGATGACGAGACTGCCATCAAGGCTGACATTGAAGTCCTGAAAAAGGTCATTCCGCAGAAACCTGCGGGCGGAAGTGGTATGCCGCCCAGCAGTGCGAAAACGCCCAGCGACCTGCAGGCACTGTATGCAGACGCAATCAAGGGCGGGCGCATCGAAGAAGCAATGATCTACAAAAAACAAATTTTTGACAAACTCGGAGGTTAATATCTATGCCTAACGTAAACGGTGTAGCAACTACTTTCAATCTGCCCAACTATGTGAGCGAACTGTTCCTTGTTGGCAACTATCGGACGCCTTTCCTGACCATGATCGGCGGGCTGTCCAGCGGCGGTC # Right flank : CGACAGCGCCGGACGCAGTTGGAACATGGGCAGCTATGCGGAGATGCTGAGCCGAACGACGCTGATGCAGGTGCACAACGCCGCCACGTGGAACGAGTTTGCCGAACACGGCGAAGATCTGATCCAGATCAGCTACCATACGCCGACCTGCGAGATGTGCGCGCCGTGGAACGGCAAAGTGCTGAGCCTGACGGGCAAGACGCCGGGCTATCCGACTCTGGCGGAGGCGGAAGGAGCGGGGCTGTTCCACCCAAACTGCCGGCATGCGTCGAGTTTGTGGTTGCCGGACAATCTCGAGGAGCAGTTGACAAAAAGTGCCGAGCAAATGGACGTCATGACGGAAGTCGAGCAAAAGTCCTTGATTTCACAACTTGTAGAACGCAGCGGCCAGCCTTATAATAAAAATATCAAAACAGGTGAAGATGTCTATTATGATGACGACGGCCGGCCGGTTTATCCGCCCAACAGCGGCGCAAGGTGGGGAAGCGTGAGCGAAGAGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5378-3631 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG697147.2 Jonquetella anthropi E3_33 E1 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5377 32 100.0 34 ................................ TTTTTGGGCCGCCCCTCGCCGGGCGGCCTGTTTT 5311 32 100.0 34 ................................ TGGGCCTCTAGGGCCGCCTTACGGTCGGCCTCTT 5245 32 100.0 34 ................................ TAATATTGCCCGGAAATCTCTCATTCTTCCGTCC 5179 32 100.0 32 ................................ CTCCGCGTCGAAGCCCGGCAAGAACAGTTGTT 5115 32 100.0 34 ................................ TTGCTCTCCGGTGGCGGGGTCAATGATCGGGATT 5049 32 100.0 34 ................................ CCCTGCTTGATGATATTAGCGACGATGAACACAA 4983 32 100.0 35 ................................ TTGTCCTCGTATCAGCCATAAAAAAATGCCCCCCT 4916 32 100.0 34 ................................ TGTTTTTTTGGGCGACGTTTTCGCCCGGTGTAAA 4850 32 100.0 34 ................................ TAATACAATTTGAGTCAGTCATTGCAAGGCTTTG 4784 32 100.0 35 ................................ CACGTCTGGTATCATAGATTTATGGCGTGGCTTTG 4717 32 100.0 33 ................................ CTTCGTTGGAATAACACCACAGCTAAAAGTTTT 4652 32 100.0 34 ................................ ACGTCTTGGTCGTCTGGCTCGTGTAGAGGGCTTA 4586 32 100.0 34 ................................ TGTCGCTCGGGTATGCCTGCACTTATGCAATCCA 4520 32 100.0 34 ................................ CCCTGCTTGATGATATTAGCGACGATGAACACAA 4454 32 100.0 33 ................................ TTGTCCTCGTATCAGCCATAAAAAAATGCCCCC 4389 32 100.0 34 ................................ AATACACGAACCTTGCTCTCCCGACAGGGCGCAC 4323 32 100.0 35 ................................ TATCGGCGCAGTTGGCCGAGAGCTGGTGTCATCGA 4256 32 100.0 34 ................................ TGGACGAGCTCAGCGGCCTAGAGGTCGTCCAGTC 4190 32 100.0 34 ................................ CTCGTCCGACCTGCCCTTTTTGCGTCCGCTCTTG 4124 32 100.0 34 ................................ CGCCGGCCCCGCTTGACGGCGGCAAAGAGGCTTG 4058 32 100.0 34 ................................ TCACAAAAAAACTCCGCTTGCTTGGCCATAAAAA 3992 32 100.0 35 ................................ CAGCCATAAAAAAATGCCCTCCTTGAGGGCATACA 3925 32 100.0 34 ................................ TCGCGCCAAGTCCGCAGTAAAAAACTGGCCGCCC 3859 32 100.0 33 ................................ TTCGCGGCGCCGTCCGGCATGACGTCTCTGTCG 3794 32 100.0 34 ................................ ATCAAGGGCGCACTTACGGACAGGCAGAGCCTGT 3728 32 100.0 34 ................................ AACTATATACGCCGTAATAACTCCAACACGTTGT 3662 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 27 32 100.0 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : ACCTATGACGTCAACGTGTGCGGAGAAGGAGGAACGCGTCGGCTGAACCACGTTGCAAAACTTTGCGAAAGCTGGGGCCAGCGCGTGCAATTCTCGGTCTTTGAATGCCTGCTCGAACCAGCTCAGTGGGTTCAGCTCAGAAGGGATCTGCTCAATGAAATTGACATGGAACACGACAGCCTAAGGTTTTACATGCTGGGAGCCAACTGGCAGAGACGGGTAGAAGTTATCGGGGCAAAAAAGAGCTACAACCCGCAGGGAAACCTGATTTTATAGCGCGAACCCTAAGCGGTCAGATCGCCGCGGGAGAATAAAATGCCCGCAGGACTGGCGGTTCTAGGGAGAGTGAAGGGATAAAGAGAAAACAGGGCCGCGCTGTCCTGTCTGCCTGCAAACACAAGCAAAAGACCTCCCCGCAGAATGCCAAAAAGGGCAAAAGAAAAGACGGTCGCGGAAAAGAGGCCGGGAAGTAAGCAACGAAGAGGAACGAAGAAATGCGT # Right flank : CGACAGCGCCGGACTCAGTTGGAACATGGGCAGCTATGCGGAGATGCTGAGCCGAACGACGCTGATGCAGGTGCACAACGCCGCCACGTGGAACGAGTACGCCGAGCACGACGAGGATCTGGTGCAGGTGAGCTATCACACGCCGTGCTGCGAGATGTGCGCGCCGTGGAACGGCAAAGTGCTGAGCCTGACGGGCAAGACGCCGGGCTATCCGACTCTGGCGGAGGCGGAAGGAGCGGGGCTGTTTCACCCGAACTGCCGGCACGCAAGTTCTCTTTTCCTCGAGGGGGTAGATTCCAAGGAGCAAGCGCTGCCGGAGTGGATGCGCGGCGGCGCGGCCGACAAAGCGCGCGGTCATCTGGAGCCGGGCGAGCTGACGGCAGACGTCATCAAAGCCGACTTCAAACGCGCTGGTCAGACGATCAGCGACGCCGAAGCCAAGCAGATACGCCAGGATATCTACGACTACACGACTGAGGGCGGGGGGTACGGCAAAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1566905-1566609 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG697147.2 Jonquetella anthropi E3_33 E1 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1566904 32 100.0 34 ................................ TGCCTTGTCGCTCCTTGCATTTAGCTGTGAGCGA 1566838 32 100.0 34 ................................ CTCGTCCGGCGTATGAAGTGGTGAAATAAAACCT 1566772 32 100.0 34 ................................ CACGCTCCTATCATGGCCGGATAAGACCGGCCTA 1566706 32 100.0 34 ................................ GTCGTTGACGGTGACGGCGCGCTCAAGGTCGAGG 1566640 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : AGGACAGATGAGCGAGCTTGACAAAGCGAAGCAGGGCCTTGGCGCGGCGCAGGCGAAGGTGACGGAGCTCGAGGCTAAGATCAAGGCTATGGAGCTCTCGGCGCTAAAAGCTCGCCTTGCGGCGGCGGCAGGCTTGCCGTCCGAGCTGGCGGACCGCGTTCGCGGTGAGGACGAGGAAGCCATCAAGGCCGATATCGAGGCCTTGAAAAAAATCATCCCGGCAAAGAGTGCCGGCGGTGCGGGAACTCCCGCGGCAGGCGCGAAAGCGTCCGACGACCTGCAGATGTTGTACGCGAACGCGCTGAAAAGCGGGAATATCGAAGAAGCAATGATCTACAAAAAACAACTTTTTGAAAAAATAGGAGGTTAAAACACCATGCCTAACGTAAACGGAGCAGCAACTACTTTTAATCTTCCCAACTATGTGGGCGAACTTTTTCTTGTGGGCAACTACCAGACGCCTTTTTTGACCATGATCGGCGGGCTGTCGAGCGGCGGTC # Right flank : TGATAGCACCACCACCCACTTTTGGGAGGCCTTGAAAACACTAGCCGCGAGAGGCCTATTTTTACTATTACCTTATTATTACCTTATTATTACTAGGGTCAAAACCTCGAAAGTCAAAGGAGTGGCCTTCGGCCACCTTGAAAGAACCGTTGCAATAACTGCATTCGCACGCTATTTTTGAGGCAACTTGGAGAAGGGCAAAGGTCAAAGTCAAAGGCCCCCGAAAAGGGAAAATCAAAAGAGCAAAGGCGCAAAATCTTAAAAACGAAGAAAAATACTTTATTATTTCTCCTGTTAGTGTATAATAAGGAAAGAAAAAGAAAGGAGTGTTAAACATGGCTCAAACGGTTAATGTAAACATCAAGCTGGACGAAGAAGTCAAAAAGGGCATGGAACAAACCTGTTCGGAGTTGGGACTATCCATGAGCGCGGCTTTCGGCGTTTTCGCGCGGAAAGTCAGCAGAGAAAAACGCATACCCTTTGAAGTATCTGTTGACCCG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1569304-1569138 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG697147.2 Jonquetella anthropi E3_33 E1 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1569303 32 100.0 34 ................................ AGATAGTTTACCAACGACCAACGACCTCTTGGGG 1569237 32 100.0 36 ................................ GGGTTTGATTTTTTGATTTTTCCTTCGAGGGGGCTT 1569169 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 100.0 36 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : GAAAGCGTCCGACGACCTGCAGATGTTGTACGCGAACGCGCTGAAAAGCGGGAATATCGAAGAAGCAATGATCTACAAAAAACAACTTTTTGAAAAAATAGGAGGTTAAAACACCATGCCTAACGTAAACGGAGCAGCAACTACTTTTAATCTTCCCAACTATGTGGGCGAACTTTTTCTTGTGGGCAACTACCAGACGCCTTTTTTGACCATGATCGGCGGGCTGTCGAGCGGCGGT # Right flank : CGACAGCGCCGGACTCAGTTGGAACATGGGCAGCTATGCGGAGATGCTGAGCCGAACGACGCTGATGCAGGTGCACAACGCCGCCACGTGGAACGAGTTTGCCGAACACGGCGAAGATCTGATCCAGATCAGCTACCACACACCAACCTGCGAGATGTGCGCGCCATGGAACGGCAAAGTGTTGAGCCTGACGGGCAAGACTCCGGGCTATCCGACGCTGACAGAGGCGGAAGACGCAGGGCTGTTCCACCCAAACTGCCGGCATGCAAGTTCTCTTTTCCTCGAGGGGATAGATTCCAAGGAGCAAGCGCTGCCGGAGTGGATGCGCGGCGGCGCGGCCGACAATGTACGCGGGCATCTGGAGCCGGGCGAGCTGACGGCGGACGTCATCAAAGCCGACTTCAAGCGTGCCGGACGGGTGATCAGCGACGCCGAAGCCAAGCAGATACGCCAGGATATGTACGACTACACGACTGAGGGCGGAGGTTACGGCAAAATCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //