Array 1 801398-800288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016635.1 Francisella tularensis subsp. novicida PA10-7858 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 801397 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [801388] 801326 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTCTCCAGCTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [801299] 801118 37 97.3 35 .....................A............... TCAACTAATTCACAAAATAAATCAGTAATATGCTT 801046 37 100.0 36 ..................................... AGTTATGATACTAAGTCCTTGCGGTAACATCAATAA 800973 37 100.0 35 ..................................... AATCTAAAATTTACACGATTTTTAGATAAACCTAT 800901 37 100.0 34 ..................................... TTTTTATTGCGTTATTCGTAATTATTAAGCCAAT 800830 37 100.0 36 ..................................... AGTTATGATACTAAGTCCTTGCGGTAACATCAATAA 800757 37 100.0 35 ..................................... GTATATGCAATAATAGCCATATATTAGCCCACCGT 800685 37 100.0 36 ..................................... TTGAGTTAGTGGATAGGGAAAATGGAAAAAATAGCA 800612 37 100.0 35 ..................................... GATTTAGAGAATGCTGAATTGACACAAAAACAATA 800540 37 100.0 35 ..................................... AACGGATAGAAAATGTCTAAAATAGATTTATACAA 800468 37 100.0 36 ..................................... GCACTACCCACCTCCACAACAGTAAGGATTCAATAA 800395 37 100.0 34 ..................................... TATTTTACTCTTAGGGGTGTTGAAAACATCTTAA 800324 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 14 37 96.7 45 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAGCTAATAAAAATAACTTTAAAAAAGCTATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATGCTTTATAAATACTGATAATCTCAATATTAGTTATGATTACACTTTTGTTGTTAGCTGTCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTTTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAAGCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTTTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGAAATTAATATAACTTGTTTGCTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-1.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1535072-1536785 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016635.1 Francisella tularensis subsp. novicida PA10-7858 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1535072 36 88.9 30 ...A.T..T.A......................... CTATACATTGCTTAATGATAAGCCAATATC T,GA [1535082,1535087] 1535141 36 100.0 29 .................................... ATTTATTCAGATCGAAATTAACACTCATA 1535206 36 100.0 29 .................................... CGATACCAGGAGTTAAGAGAAGATGTTTC 1535271 36 100.0 27 .................................... TTTCAATCTCGCCAATTATTCTTTTTT 1535334 36 100.0 28 .................................... GATAGTTTAGGATGCAGAAATATATTTG 1535398 36 100.0 28 .................................... AATCGCATATATTTTATTGTGGTCTCCA 1535462 36 100.0 28 .................................... TATCAGAAAAAGCTAGAGAGATACTAGA 1535526 36 100.0 29 .................................... ATATAGTATCTACGGGTCTATATCATTTA 1535591 36 100.0 29 .................................... GATAAAATGACAAAAGAAGCAGCGATAAC 1535656 36 100.0 29 .................................... TAATTTTCTATCTTTAGATTTATTATATT 1535721 36 100.0 28 .................................... CTGCTATGCTTACGTAGTCTCCGGCTAT 1535785 36 100.0 27 .................................... TGTAACTGAGCCGTGCAACAATAATTC 1535848 36 100.0 30 .................................... AGATTAGAATTGAATCTTATTTCCCTTTGA 1535914 36 100.0 29 .................................... GTTGTTCCATTTTGGAACACATAGTCAAT 1535979 36 100.0 29 .................................... AATACTACTTTCATCTAAAGCAACTCCGC 1536044 36 100.0 26 .................................... ATAATAAAAAACTCACCATCACGCAG 1536106 36 100.0 28 .................................... ACCTCAAAAACGATATTTCAGCTACATC 1536170 36 100.0 28 .................................... TGGAATAAAAAGGTAAAACACATACAAA 1536234 36 100.0 29 .................................... CTCTACACTAAGCCGACTCTTAAGCAAGA 1536299 36 100.0 28 .................................... TGACAATGGTCGTCCAATGGCTAACAAG 1536363 36 100.0 29 .................................... ACTAAAAAAGAACCAGTAGCCCTAAAGCT 1536428 36 100.0 28 .................................... GAGCGTAAAAACGTTCGCATGGCTTTCT 1536492 36 100.0 28 .................................... TAAATACAAACACCATTCTAATTCAAGT 1536556 36 100.0 29 .................................... TGAGGTGCCACAAAGGTGCCAAGAGTCTA 1536621 36 100.0 27 .................................... CCCACAAGATGAAGAATCACAACAATA 1536684 36 100.0 30 .................................... ACAATAAATTTAATAATACACATGAAACAC 1536750 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.6 28 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Left flank : TAATATCTATTAACTTAACCTTCTCTTTTTTTTGTAGGTCAAGAAATTGCTTTACTGATATTTTTTCTACTTTATTCATCCTATTCTCCTTATTTTAACTTTATCTAATTTAGATTTTACTAATATAAACTTTAAATTTTTAAATTATTTATCACCGCAATAGATGCTGTACAAAGCCTCCAATATTTTTGTTACCGAAGGATCGTTGATACTGTAATATACATTTTGCGCCTCTTTCCTACATTTGACCAGACCATTATTTCTCAATACTGATAAATGCTGAGAAAATGCCGATTGGCTCAAACTAGAATACTCTGCTAGCTCTCCTACTGTCATCTCTCTTCGGAGTAGCAAGCATAATATCAATAATCTCGACTCATGGGATATTGCTTTTAATAATGAAGAAGCTTTACTAGCATTATCTTTCATCTGCATTAAATCCATTTTCATAAGCCTATAAATTCTCAAGTAGTGATATATTAGCAAATTCTAATTTAGAA # Right flank : CCCGTTTTTGCCTAAATCAGCAAAAAAAGACCTAAAATCTATGATTTTTTTAGCATTTTGATATATAACAACAGTCATATTTTTAAATATCTCTAAGAACTTAGTGGTTATTTTAACATAAAGACTAAGGTTTGCAATTTTTAGTCTATAAAAACAACCTCTTGTTCTCTATGAATCGCATAACCATATTTTATCACATCCTTATCTGGAGCATTAAAGATTAAAACACTATCAGCATTTGTAAATAGTGGTACATAGTGATTTTCTATCTCAGCTAAAATCAAGTCTAACATTCTCTTGCTATATTTGAGCTCAAATACCGAATATTGTAAACGTACACCATAACTTTCTAGAAATTTGGCAAACTTTGCACGTACTTTATTATTACTAAAATCATAACTGACTATCAACATACACCCTCCTAGTTTCATAACAAAATATTGGATACTCTGCAATTTCTTTGTCTCGCATAAAGGCACGATAAAATTCTCTTACATATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //