Array 1 55-579 **** Predicted by CRISPRDetect 2.4 *** >NC_006823.1 Aromatoleum aromaticum EbN1 plasmid 1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55 29 100.0 33 ............................. CGTCAGGTCTGCAACAAAGATCAACCCTACTCG 117 29 100.0 33 ............................. GGCTGCGAGGATGGCAGCAACCCGCATTTCAGT 179 29 100.0 33 ............................. TGTCTTTTTTGGGTCTTGCTGTTTGCGCGGCTG 241 29 100.0 33 ............................. GGCCGACGTTCGGTCAAGAGGCTGGACCCGTCC 303 29 100.0 33 ............................. CAAGTAACGACACGCCCACCAGTCGCGCCCCCG 365 29 100.0 33 ............................. AATGCCCTCTTGCGTCTCACGACGTTCGAGGCC 427 29 100.0 33 ............................. GATCACACGCCGCTCGATTGGATCGTCATCTGC 489 29 100.0 33 ............................. GGTGGAACGAGCCTTCTCCATGCCCCCTCCGGC 551 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 33 GTGTTCCCCGCGCATCGCGGGGGTTGAAG # Left flank : CACCATCACCCAGGGTTGAAGTGCCTTGCGGCAAGAGCTCACGATCTCGACGAGG # Right flank : GTGACCCAGTGTTGCCGGCTGCCAGAATCCGCACAAATCCGGTGTCGTTAAACGGCGGCGTCGAGCGGGCGCCGCCGGCGCGGTAAGCGTCACGAGGGCCGCGCGCGTCGGCCCTCGTTGTGCTGGGGGGCGGGGCTCGATCAGAACGACGGATCGTCGAACGGCAGCTCGGCCTGCGTGAGGCGGTCCTGGCGGTAGTGCTCGAACAGGGCGAGCTCGTAGTGCGCCCAGATGCGCTCGCGCAGATCGTCGAGCAGCTCGATCACGGCCCGGGCCTGCTCGGGCGTCCAGTCGGCGTCGATGAGCAGGTCCAGGCCGCGCAGCAGCCCGGACGGCGGGTGGTCGGTCTTCATGCGGGACTCCGTGCGGATTTGCGTTTGCGGGCGTTGGTGGCGGCGCGCTCCTGGGCTTCCTTGTGGCGCCAGGACGGGCCCTTGAGGGCGATGATCTCGGCGTGATGGACCAGGCGGTCGATGAGCGCGACCACGCAGGCGGCGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATCGCGGGGGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.10,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 4003-4908 **** Predicted by CRISPRDetect 2.4 *** >NC_006823.1 Aromatoleum aromaticum EbN1 plasmid 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4003 29 100.0 33 ............................. GGTTATGATGATGTGTGTCGGCGCGACGGTGGC 4065 29 100.0 33 ............................. TGTGTCGCGTTTGCGGACGCGGTCCCCGTCGAG 4127 29 100.0 33 ............................. CACTGACCCCCCGCGTTTCTCGGGTCGGCAGGC TATAAG [4144] 4195 29 100.0 33 ............................. GAACGTGGTTCGAGTCGCATTGAGCAAGCTCTT 4257 29 100.0 33 ............................. GTTGTGCAGAACGCTACGGCTACACGCATGACC 4319 29 100.0 34 ............................. TGAGCTGACCTAGTAGCGCTAGCACCTATTCGAA 4382 29 100.0 33 ............................. GTAGCTGAGGGGGTGAGTACACCGTCGATCTCG 4444 29 100.0 33 ............................. CGCGGAAGGGGTCGGAGTTGAACACCATCGCGA 4506 29 100.0 34 ............................. TATGGGCTTCTATTGCGGCGCGTCGAGCGTCACT 4569 29 100.0 33 ............................. GGCCGCCGAGTTGGTCGGGTCGCTCCAGAAGCG 4631 29 100.0 34 ............................. GTCGCGTCCCAGCCCGTTACGTCACCAGCTCCTC 4694 29 100.0 33 ............................. GATCACACGCCGCTCGATTGGATCGTCATCTGC 4756 29 100.0 33 ............................. GATGTACAAACTCATCCAGGCGTCGGTCAAATT 4818 28 89.7 34 ...........A.C....-.......... GGACTTGCTGTAACTGCCCTCGAAGGCGAATGTT 4880 29 79.3 0 ..........TAT...T........A..A | ========== ====== ====== ====== ============================= ================================== ================== 15 29 97.9 33 GTGTTCCCCGCGCATCGCGGGGGTTGAAG # Left flank : CCCGATCACAGTGGCTGCAGATCAGCACTGCCGCGCGGCACGCGGCACAGAGATAGCGTCGTCCGGTCGACTCCATGGGCCTTGAGGCCCGTGGGAGACTCGACGCCAGCGCCCACTTCGTGAAAGACTACGGGCGCAACGACCGCGCAGCCTTGCGCGGGTGTGGGGCGCGACACTGGGGATGACTTGGCGGTTTGAGCCGGTGTCGCGCCTGCGTTGCCACAGGCCGAGCCCGATTGTGCGCGCATCGGCCACTCGGGTGCCAAACGCCCTCCCTCCCGATTGCACGAACACCCCGCCCGCCATCGGCGCGCTGGGGTCAGGGGCGTTTCCAGTCGCCCTACGGGCGCCTTCCAACGCCCCTGACCCCATCAAGCAAACGGCTGCTATCCGCTCACCAGATCAAGGTCATGCTGTGCCGTGCCGACGGTGGACGCCGGATTTGTGCGGGAATCGACCGCCGTTAACAACCCAGAGCCTGGCAAAGGATCGGCGGCGCA # Right flank : AAAACCGCAGCCAACCTTGTGAGGTTGAGCTGCGGCCGAAACCGAGAGCCGTTCTGAAGCCGACTCTCAAACTAACTACCACTGGATCACATCGGGATCGAACTTCGGCTTGGGTTTCGGACGAAAACGTGCCACGACCGCAGCAGCCTTTCGCTTGAACGACCGACCGCGCAAAACCAGAGGCGCCACCCGATAACCCAGCCATGACAACCGCTGGAGCCACCGTGTCCTCGCCACCAGCTCACCGACCACCAAGTCATCGACAACCTGCTTGAGAACCGCCTGGTGGGCCTCGCACGCGGGACTGTTGCACGGCCCGTAGTGTTGGCGGATCACAGGCCTCGCAAGATCGTCGAGACTGATCTCTGCCGAACTCCACATCGAGGTGAGCTTCTCGCTCGATCTGAGACTGAGCAAGACGGTTTTCCCGTAGGACAGCGCCCCAGCGTACCCGCCGATGCAATGATGCAGATCTTCGCCCTCCTGGAAGCATTCGGCTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATCGCGGGGGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.10,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1946918-1941465 **** Predicted by CRISPRDetect 2.4 *** >NC_006513.1 Aromatoleum aromaticum EbN1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1946917 37 100.0 34 ..................................... CACGCACAGGACTCGGTCAGCAGTCTGAACCTCA 1946846 37 100.0 34 ..................................... CTCGGTCGCGCTTGTCTCTTCACTGGGCAGCATC 1946775 37 100.0 35 ..................................... GATCCAGTCGGCGGTGTAGGCGACCATTCGGCGCC 1946703 37 100.0 37 ..................................... TCGAACGACGGAGCGCAGTCCTCGCACATGCAGAGCC 1946629 37 100.0 34 ..................................... TTTCTGTCCTCGCTCTTAGTGGTAACAAAGATGC 1946558 37 100.0 34 ..................................... TTGCGCTGCTTCGTCGCCTTGTCGTACTTATCGA 1946487 37 100.0 39 ..................................... GATTTCCGACAGCCGCGACAGCAGCGCCGTTTTGATGCG 1946411 37 100.0 34 ..................................... CTCTTGCTGTACCGGCTCGACACCACGGACGAGA 1946340 37 100.0 36 ..................................... GCACCGCGCAACGTGCGGCACATCCTGGACCTCACC 1946267 37 100.0 35 ..................................... TCCGACATCGTCCTGTGCATGGACATGGACGAGCC 1946195 37 100.0 35 ..................................... GGTACAGGTAATCCCACTCGGCGTCGCTCATGCCC 1946123 37 100.0 34 ..................................... GTCGACCGTGCGCCGCTGAGCCAGTACGTCCGGG 1946052 37 100.0 35 ..................................... CTTAGCCCCGCGCAACTTGAGGCAGCCGAGAATCG 1945980 37 100.0 36 ..................................... GCGTCGATCAGCAAGACGACCGCGGAATCGGTGCGC 1945907 37 100.0 36 ..................................... CTGTTGGGCTGCGTCTGCGGCATCAATCGTCGCCTG 1945834 37 100.0 34 ..................................... CTCGATCTGCCGGTGCACCACCGCCTTGATGACC 1945763 37 100.0 35 ..................................... CGCCGAACCGAATCGCCCCCGCCAATCTTGGTCCA 1945691 37 100.0 35 ..................................... TGTCGGGCGCTACGGTGCTGATCGCTCCAATTCCG 1945619 37 100.0 34 ..................................... GCCCTCTATCCAGACCTCAACTGCCTCCTGGATC 1945548 37 100.0 35 ..................................... AACAAAACCTTCGTCGACGTGCAGGCGATCACTGT 1945476 37 100.0 35 ..................................... GCTCTCAACAGCCGCAAAAAATCCGCCCCAGCCAC 1945404 37 100.0 34 ..................................... ATGTGATCCCCCTTCCCACCGACCCGTCGCCAGC 1945333 37 100.0 35 ..................................... GACACCTATCTCTATGAGCAGGCCGAGAAGCTGAA 1945261 37 100.0 35 ..................................... GCCTGACCGAACCCTCCCGCCCACGACCACGCCGC 1945189 37 100.0 36 ..................................... GCGCGCAAGTACAACCACGACCCGCAAAAAGGCTTC 1945116 37 100.0 35 ..................................... GTGTAGTTGCCGTGGTTGTCGTGGCCGACGATCGT 1945044 37 100.0 36 ..................................... ATCGACAGCGTGCCGCACCCGACGCGTCGGGCCATC 1944971 37 100.0 34 ..................................... GCGCCGATCGAGGGTGAGGCGTGAGCGCCGAGCG 1944900 37 100.0 35 ..................................... TCGGTGACGTTCTCCGCACCGTTGCGGATTGCGGC 1944828 37 100.0 34 ..................................... AGCGCGAGTTCGCAGCACGCATCGCGCAGCGCCG 1944757 37 100.0 36 ..................................... GATACGGCCGTCGCGCTCGCCGGGCAAGTGTGGGGC 1944684 37 100.0 34 ..................................... GCGCAGCACCGGGTCGAGCGTGACCGTGGTGACG 1944613 37 100.0 35 ..................................... GCCGTGATAAGCGGCGTCGGTCATCAAGTCGAACG 1944541 37 100.0 35 ..................................... AGGTGGGTCATGAGGGGTTGGAACGAACAGGTGCG 1944469 37 100.0 34 ..................................... CCCGAGTCGATTTTCATCGCCGACGCGCTCACCC 1944398 37 100.0 36 ..................................... CCCGACATCGACCCCGCTGCGGCGCGCCTCGCCATG 1944325 37 100.0 34 ..................................... GCCTGTGTCGTCGCGCTGGTAGGCACCGGCGAAG 1944254 37 100.0 35 ..................................... GACATGAGCACGGCGGCCGGTCGCGCCCTGGCGAG 1944182 37 100.0 36 ..................................... GGCATGGATCGAGGTTTTCACGCTCACGGGGCAGCC 1944109 37 100.0 35 ..................................... TGGCTGACGATCAGGTCCGCGGCGAGGATCTCGGG 1944037 37 100.0 44 ..................................... AGCTTGTCGTGGGCGGTCTTCAGCGCCTGGTGCTCGGCAGTCGA 1943956 37 100.0 35 ..................................... GGCGTCTTCGGCCGTGAAGGCGCTGGCGCTCGCAT 1943884 37 100.0 35 ..................................... CGGTCTGGTCGTGCGTGTCGTCCGGACTGCTCGAA 1943812 37 100.0 34 ..................................... AGGTAATCGAGGTCCGGCCGCAGCGGGTCGCCGT 1943741 37 100.0 35 ..................................... TACGTCGACTCGGCGCTCGCGTCGGTGCAACTAAT 1943669 37 100.0 34 ..................................... TTCGAGCTTGGCGCGGTGCTCGGCGATCTGCCGG 1943598 37 100.0 35 ..................................... AACCTGCCAAGCGAACTCGACGCACAACTCACGTG 1943526 37 100.0 35 ..................................... AAGCTCGTGCTCGCCGACGCCGGATGGACCGACGC 1943454 37 100.0 34 ..................................... CATCAGTTGCAGGTCGTCGAGCGCCCGATCCCAC 1943383 37 100.0 35 ..................................... ATGACGGCAATCACGATCACGGCGTAAGCGCCAAG 1943311 37 100.0 35 ..................................... ACGTCCTGCACGCCGAGATACGCCTTAGCCTCGCG 1943239 37 100.0 36 ..................................... AGTGGTTACCCGGCAACGCCGGCATTGGTGACCGTG 1943166 37 100.0 34 ..................................... GAAGTTCGCCGCGTCGGCGAAGCTCGCCGGGCGC 1943095 37 100.0 35 ..................................... GGGATGGACCGACGCCTACATCAAGCTGATCCGCG 1943023 37 100.0 35 ..................................... ATCTTCTCAGTCCGCCCCTTTCCGTCGCAGTCCGG 1942951 37 100.0 35 ..................................... TCCCTGATCGCCTGCTTCACCGCGGCGAGGCAGCC 1942879 37 100.0 36 ..................................... GTCGTATTCGTGCTCGACTTTTTACTGCTGCCGCCG 1942806 37 100.0 36 ..................................... CGTTTCCATCGTCGCCCAGTCAGCCGGGTTCAGGAC 1942733 37 100.0 33 ..................................... CCGCTCGACGATGCGCACCGCCCGGCCTGCCGC 1942663 37 100.0 35 ..................................... GAGACAGGGAGGATGCCGTGAATACCGTGTGCATG 1942591 37 100.0 37 ..................................... AAGGTATTCGTTCTTGTCTTTGTCAGCCATCACTCAG 1942517 37 100.0 39 ..................................... ATTTGCGACTTGAGGCGCAAAGAGGCGGGCGCCAGCTTG 1942441 37 100.0 34 ..................................... AATATGACTACGCCGCAGAACGAACTCGAACGAT 1942370 37 100.0 34 ..................................... AGGTTGTCCTTGATCTGCTGGTAGGCGTTCCAGC 1942299 37 100.0 35 ..................................... AAGCTGTTCGCCGCGGTTGTCCCAGCCGGCATTGA 1942227 37 100.0 36 ..................................... CCCCTGCCGGTGTTCGACTACCGCGACATCCGTGAG 1942154 37 100.0 36 ..................................... GAGGTCGAACTTGACCACCTGCCCCTCGGGGAACAT 1942081 37 100.0 34 ..................................... GTGCTGCATGGCGTGCAGTGGGACTGCGTCAACA 1942010 37 100.0 35 ..................................... TACGTGCGTAAGCGTGTGGGAGGGAAGCTCAGGAA 1941938 37 100.0 38 ..................................... GCTCTAGTTCGCGGATGAACCCCCCGCCGAACTGATCG 1941863 37 100.0 36 ..................................... TTCGGCCAACCGCTGAGATGCCTAACCACCCGAACC 1941790 37 100.0 37 ..................................... CGCTTCGCTGCCGTACCTCCGGTAAAACTCGCGCTTG 1941716 37 100.0 34 ..................................... GACGTACAGCCCGTTGTCGTCCTCTTTTGCGACG 1941645 37 100.0 35 ..................................... TCGTCCAGCAGCTTGCCGATCGTCTTGATCTTGGT 1941573 37 100.0 35 ..................................... CAGTTCCGGACCCTGCTCGCCGACGAGGCGCAGCC 1941501 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== ============================================ ================== 76 37 100.0 35 GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Left flank : CCAGGCTCACGGTGCCAAAGCGCGAGAGCTGGTTCTCGCGGGCGACTTGCAGCACCTGCACGAAGGCATCGGCGAACTGATCGCCGAAACGGCGGCGGAACGTCGCCAGCGTGTCGTGGTCCGGATGCTGGTCGCACGCGATGAAGCGGAAGGCCAGCGAGTCGTACGTGGCCCGCTCGATCTTGCGGCTCGAATGGGTTCCCGTCGCGTAGCCGTAGATCAGCAGCGACAGCAGCAGCGCCGGGTGGTAGGCATCGCTACCGCGACCCGCGTAGGCGCGCTCCAATGCCGACAGGTCCAGCCCTTCCACCACATCGACCACGTAGCGCGCCAAGTGCGATTCGGGCAGCCAGTCCTGCACCGACGGTGGTAGCAGGTAGTCCGTTTGGCGATCGATCGGGCGGAAGCGGCTCATGCTCTCGGGTTCCAGGGGCGACGCGTCATTTTACAGGGGATAGTCCGACACGCTGCTAGGATCAGGCCATCAAGGTTCGACGGGA # Right flank : TATCATTTGATGGCAAGTCCACCAGGAGGGTCCATGAAGGCCTTTACCGCCCGAGATCTTCGCGAGCGCACTGCGCAAGTGGTCCGCGTTGCAGAGGAAGGCAAGATGTCTGTCGTGACCAAGCGCGGCAAGCCAGCTTTCGTCGCGGTACCCTTCGATGAGGCGTTGCTGGAAAGCGGGGTACGGACATCGCTGGCGATCAGGCTCTTCGACGACGGCAAGCTCACGCTCGGACAGGCGGCGAGGTTTGCAGGGGGCGCCGTCGAGGAGATGATCGACCGCGCTGCGACGGCCTGCCAAGCCGGGAAAGCCTGACGTCACTCGCCCTCGAATGGGGTAATCCGGGGCGATGATGAATCGTCTTCACTCAGGAAGTGTTCCTCACGCCCCTGAGATTAACCGCCGCTCGGATATCGGCAGATCTCCGCGTGCAGCTATCCTCGATAGGCTGCCGGACAGCAAAGGAATTTCCCTGGGGGACACGTGAGAAAAGCAATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-17.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1950469-1948501 **** Predicted by CRISPRDetect 2.4 *** >NC_006513.1 Aromatoleum aromaticum EbN1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1950468 37 100.0 34 ..................................... GATGCCGGCGCGCAGCAGCATCGCCTTGCAGTCC 1950397 37 100.0 34 ..................................... TATCCGACGGAGGACATGCCGATCGGCGTGCTGA 1950326 37 100.0 35 ..................................... TCTAAATTCCTGGCAGACGTGAAGGCGGGAAACCA 1950254 37 100.0 34 ..................................... ATGGGCAGCAAGCAATGCTGCGCATCCACAAAAC 1950183 37 100.0 34 ..................................... ATCACAAATCCCTAATGCTCGCGCCCAACTCAAC 1950112 37 100.0 35 ..................................... AGTAATCGGCCCGAAGTCGCATCCGTCGCGCTCTG 1950040 37 100.0 36 ..................................... TCATTCGACCTCGATGTATTCGACGACGGGCTGGCG 1949967 37 100.0 34 ..................................... TGCCTGGGGCGCGGTGGTTGAGGTGCCGGCCTTT 1949896 37 100.0 34 ..................................... GTGCTCGACAGCATGCTGAAGTGCGGCATCGCTG 1949825 37 100.0 34 ..................................... AGATTGACCAGTACGTCGGCATAGAGACTGCTAT 1949754 37 100.0 34 ..................................... AGCCAGGAGATGGCTGACACCGAACTCGTCGACC 1949683 37 100.0 34 ..................................... ATTGACGACCCAGCGTGTCGGCTGATCACGCTGC 1949612 37 100.0 33 ..................................... ACCGGTGAGCCCGTTGAGGTGGCAGAAATCGAC 1949542 37 100.0 34 ..................................... GTTCCGAGCGCTTGCCACGCTCCGGCGTAGTCGG 1949471 37 100.0 35 ..................................... TGGTTCCGCATCGGTCACGCCGGCAACCCGACCTA 1949399 37 100.0 35 ..................................... GCCGTGCCGTTGAAGCTCACGCCATTGATCGTGCG 1949327 37 100.0 36 ..................................... GCGTTGGCGGCCCAATCGATCGCCGTGCCGGAGAGT 1949254 37 100.0 34 ..................................... CTCCGATATGACCCTGCAGGCGGAAACGTTCGCC 1949183 37 100.0 34 ..................................... AGTCCGCGTGCGGTAGCGGAACACGCACTCGATC 1949112 37 100.0 36 ..................................... GACGATGACCAGCGGATCGTCCCCGTGACCGGGTTC 1949039 37 100.0 34 ..................................... GCTTTTGTTCGCTACCGAGCAAGGCGATGACGCC 1948968 37 100.0 36 ..................................... GGCGAATTCGTCGAGGCGGTGCGGCAGTGGGGGCGG 1948895 37 100.0 34 ..................................... AGCCAGAACGAGTGCATGGGCAAGATCGTGGGGA 1948824 37 100.0 34 ..................................... TCGTTGATGGGGATGCAGCCGGCGATCTCTCCTC 1948753 37 100.0 34 ..................................... GCGACGACAACTGACCTGCTCCCGCACCAGGAGG 1948682 37 100.0 35 ..................................... AATAAGTCGCCGACCATGAACAAGGACAACATCAT 1948610 37 100.0 36 ..................................... ACCATGAATCCGACCATCGAGCCGAAGGTCATATCC 1948537 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 28 37 100.0 35 GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Left flank : CCAGTCGACCTGCATCTGGTGGCCCGGCGCCGTCTCGAAGCGCACCACCGGCTCCGATGGCTGCGCCGGCTTGAGCATGTGCATGAACGCGCGCAGCTGGCTGGCGCCACCCTGATAGCCCTGCGCCACGATCTCACGCATCAGGACCGAGGCCGGAATCCAGTGCGGATGCGCCGCCGCCTGGCGTTCGCGCAAGTACGCCTCGAAGGGCGCCAGCTTCGTCACCCGCTGGACCTTGCGCGCGTAGCGCGGCAGCCCCGGCGACGCCAGGTGCGCACGCACCGTGTTCACCGCACACCCCACCTCGGCGGCGATCCGCCGAAGGCTCAACCCGTGACGCCTCAACAGTTCGATTTCCACATACACCTCGTCTGTGATCACCCGGGCTCCAAATGGCCCGATCTTCTCAACTCGGTGTATCAACTTTCAATCGGCAGCCCGTATCAACTTACATCCGGCAGTGACAATCCAGAAGTGCGGCCTCACGGCGCCAGTTCCTG # Right flank : AGGTCTAGCAGCGTGTCGGACTTGAGCACCGCCGGCGCTGTATCCGGGGGCTTGATTTCACAATGTGAGAAACGGTCGGCATTTCAGGTTCCAATCAGCGGTTTCCTGTCCGAAATCGCAATGCCCCTGTCCTTTTTTCTCACTGCGGACGCAATACGGCCATGCGCTTCAAGTTCCACGCCAAGCACACCAGGGTCCACTCGGCGCGCACGTTGTCGAGCCCGCGCAGCAGGAACTGGCGAAATCCCATCACCGACTTGATGATGCCGAACACCGGTTCCACGGTCTGTTTCCGGAGCGCGTAGGCGGCGCGGCCGGCCCGGGTCTTGAGGGCGTGCTTCATCTGTTCGACGGGGCTGGCGGGCTGCTCGAGCGGGGCGGGCTCTTCGAAGCGGCGGCGCCAATCCGGATGGTGCTCGTCGCGCCCGACCGCGATCAGCGGTTCGATCCCGGCGGCCTGGCAGCGCTCGACGTTGCGCTCGCTGAAGAAACCGGTGTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-17.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 3 1953576-1952604 **** Predicted by CRISPRDetect 2.4 *** >NC_006513.1 Aromatoleum aromaticum EbN1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1953575 37 100.0 35 ..................................... CAGAACGTAACGAAGACGATCGGCAACAACGCCGC 1953503 37 100.0 34 ..................................... CCAGTACGCGCTTTAGTTGCCATGCCACGCCGAA 1953432 37 100.0 35 ..................................... ACGCAGGCCACCCTGCACCAATATCGATCCCATCC 1953360 37 100.0 36 ..................................... TAGTTAGTGTGGCTTATCCACCCCGCCGACTCAATC 1953287 37 100.0 35 ..................................... GACACGTTCGACCTCGACCGTGCACATCTGCAAGA 1953215 37 100.0 35 ..................................... ATCAGGTGCTTGTAGTAGCCGCCGGCCGCGCCGAG 1953143 37 100.0 34 ..................................... ACCTCTCCCGTGGCCCGATCGACGATCGGATTGC 1953072 37 100.0 34 ..................................... ATCTTGTGCGGCCCTCCGTCGGTGCCAGTGGTTG 1953001 37 100.0 35 ..................................... ATCGAGACGCAGCGGATCGCCGCGAACAAGTCGTT 1952929 37 100.0 35 ..................................... CATCGCAAGGGCTTCGCGCTGTTCAAGGTCGCGTT 1952857 37 100.0 35 ..................................... ATCGCCTGCATGGTGATGGCCAGGCAGTCGCCGAC 1952785 37 100.0 34 ..................................... TGCTCCGCTGCACGCTCTGCGGGCACGAGATGCG 1952714 37 100.0 37 ..................................... CTCGGTTTCCGCAAACACCACCAGCCCGCCCTCGCTG 1952640 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 35 GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Left flank : CCCTTCCTCGTGAGATGAACCGATGCTCGTTATCGTTTGCTACGATGTCAACACTGAAACCCGCGCCGGCCGCCGGCGACTGCGGCGTATCGCCAGGATCTGTGAAGGTGTCGGGCAGCGCGTTCAGAAATCGGTCTTCGAGTTCCAGATCAGTGTGGTGCAATTCGAAGAACTGGAGCGCCGACTGCTCGACGAAATCGACCTCACCCAAGATAACCTGCGCCTTTACCGATTGCCCGATAGTCGCGGCACGGAAGTTCGGGAACACGGCATTTTCCGCACCACCGACTTCGAAGGACCGTTGGTGTTGTAGGATTCGCTTGCGCGAACCTCAAGCAACCGGGACATTCCCTATAGGTTCGCGCAGAGCGGAGGCCTTTGCTTTTACTCGTTATTACTCCGGATTGTCCAAATGAAATCACCCCGACGAACTTCTTCGCACAGAGGTTCTCGTAACACGTTCTTAATTCGTCGGCGGATCAATACATTACGTGCGAAGA # Right flank : CATCCATGTCAATGCCGATTTAAAACTGACACGCTTTCCCGGCGGTTGCCGATTTAAAACTGATACACCTCTATCCCATTGACATGTGCGACGGAGCGCCCCGAAGGGAGGGCCGAAGGCCCGACCGCAGGGGCGCTCCGTCGCGCGGCCCTCAGCCGGCGACCGCCAGCGCTTGCACCATCCCGGCCTTGCGCTGGTGTTTCAGCCGGTAGCTCTCGCCGCTGATCGGCACGATGTGCGCGTGATGCAGCAGCCGATCCAGTAGCGCCGCCGTGAGCGTCGCATCCTGGGCGAAGGTGCTGTCCCACTGCCCGAACGACAGATTGCTGGTCACGATCAGGCTGCCCCGCTCGTAGCGCGCCGCGATCACCTGGAAGAACAGGTTGGCCTGCTCGCGCGTCATCGGCAGGTAGCCGATCTCGTCGACGATCAACAGCCGGTAGGCGTTGATCGCCCGCTGCATCACGTTCTTGAGCTGGTTGCGCTCATGCGCCAGGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-17.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //