Array 1 1762054-1768383 **** Predicted by CRISPRDetect 2.4 *** >NC_011060.1 Pelodictyon phaeoclathratiforme BU-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1762054 32 100.0 35 ................................ TTCTGCAGCAGTTGATGGTTGGATGGGTATGTCAA 1762121 32 100.0 34 ................................ AAAATCGGCTTCGGCGCCTGCAAGGCTCTCATAG 1762187 32 100.0 35 ................................ GTCAAAATATCATCAGTCGGTAGGCATACGAGAAT 1762254 32 100.0 35 ................................ TGGTTTCCGGCAATGCACGACGGACGGGGCAGATC 1762321 32 100.0 36 ................................ ATGAAGAGGTATTATCAGGAATGCATGGTTCAGTAC 1762389 32 100.0 34 ................................ TGCTCTTTGTGTACGTATTGTTGCAGTTGCTACA 1762455 32 100.0 34 ................................ TCAATCTGCTACGCAACTCCTTTTTCAGAGTGTC 1762521 32 100.0 36 ................................ AACCTTATCAATACGACAAGCTTATTAGCAAAATGT 1762589 32 100.0 35 ................................ CTATCATTGTGCCGCTTTGAGCAACGATAGTGCCT 1762656 32 100.0 33 ................................ CAATCATACTATCTCCTGTTGTTTGTGCGGGGT 1762721 32 100.0 35 ................................ CGAGATTGCGCAGGCGGCAAATGGTGATCTTGGAA 1762788 32 100.0 33 ................................ CATTGTAGTGGTGTTTTATGGTTTTAACAACTC 1762853 32 100.0 34 ................................ AGTTGTCGCTAATTCAGGGGCGCAGAATATCCCG 1762919 32 100.0 34 ................................ CAGTCGAATAAGTCGCGAGATATGTCAATCCACT 1762985 32 100.0 34 ................................ TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGAT 1763051 32 100.0 35 ................................ AGATACCGCTTGGCCCTGCGGTTCAGTCCATCAAC 1763118 32 100.0 34 ................................ TTTTGTTCCCTGATAGGTTACCTGATTCGGTGAT 1763184 32 100.0 34 ................................ TATCGATACGGAAAAGCAAGAACGTGCGGATTTT 1763250 32 100.0 33 ................................ CGCGTTTTATTGGGAAGTGTATCGGTTATGGCT 1763315 32 100.0 35 ................................ CAACAATTGCCGCAAAATCAACAATAGTTATCTGT 1763382 32 100.0 33 ................................ TTCTCAGCAATGCTCTTTTTGACAAGATCACGC 1763447 32 100.0 34 ................................ TTTTCTCGGCAGCTTGAGCTGATTGAGGCAGGAG 1763513 32 100.0 35 ................................ TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGATA 1763580 32 100.0 34 ................................ CAAGTGTCGCAAAATCTCCGCTCATTTTATCCCT 1763646 32 100.0 34 ................................ GATTATTCGTTTGGAAAAGTATTGAAACGGATGT 1763712 32 100.0 34 ................................ TACAGAAGGGGGGACAAGAAAAGACCTGTCCCCT 1763778 32 100.0 35 ................................ GCGCGTAACTGTAAACTCTTTTCCGCACTCCTCAC 1763845 32 100.0 35 ................................ AGGGGTACAGCATATTTATGCCCTGGAGGCGTCAT 1763912 32 100.0 34 ................................ TTTTGTAATCACCTCGGCTATAGATTGGAGTCCA 1763978 32 100.0 35 ................................ ACATTAAAGGCGTAAAGCATGTAGATATTTTTAAA 1764045 32 100.0 32 ................................ TCGGCAAACTGATAACAAAATACGACATCCAA 1764109 32 100.0 35 ................................ GACTCGATACATGAAATATGGGATATCATGAAAAA 1764176 32 100.0 36 ................................ AATTATTTGGCCGTCATCCCTTTTTTGGGAATCAAT 1764244 32 100.0 33 ................................ CATTATAGTTCCCCTTGTTTTTTGCTTATGTAA 1764309 32 100.0 36 ................................ TGTCAATCGCTTTTGTATCTCATCTTCCTTTAGGTC 1764377 32 100.0 34 ................................ TGCCTTCTGTGCGGGAAAATGGCAACAATGGTGT 1764443 32 100.0 35 ................................ CGGTACATACTTTTTGAGTGTATCGACCTGCAATG 1764510 32 100.0 34 ................................ AAATAACATTATCTGTTCTGTATACAGACCTTTA 1764576 32 100.0 34 ................................ TGCATCAATCACACCGGCATAATAAAGAGGTCTA 1764642 32 100.0 35 ................................ ACCGCTCTCATATCTCTATGAACTAAGCAAAGGAA 1764709 32 100.0 33 ................................ ATATTTGGCTTTGCCGGTGTATGGTTTTGCATA 1764774 32 100.0 33 ................................ ATCTTTTGCCGACGAGGAGCAGACGTCCCCTGC 1764839 32 100.0 34 ................................ TTCCACATGTGCGACGACGGAAAAGCCTCTCTAT 1764905 32 100.0 33 ................................ ACCTGCGGGCATTCTCATGCAACAAAAGGATTT 1764970 32 100.0 36 ................................ GCGTTCAGCCCTACCATCTTTGCGCTGGAATGCAAT 1765038 32 100.0 34 ................................ CGCGCGTCATCCCAACTCTCCTGCATGTCATCAA 1765104 32 100.0 35 ................................ GCAATGGTTACCAAGCTCCATATAGTCGTTTGGTG 1765171 32 100.0 34 ................................ GTGTGTGGTCATAATGCCGTTTTCCATCAACCAC 1765237 32 100.0 35 ................................ AGCACTTCCGCTGCCCGTTCAATTGTCATCTCACT 1765304 32 100.0 34 ................................ TTGCTGATGGTGAGGGCGCACCAGAAGTTTACAG 1765370 32 100.0 36 ................................ CATAATCACTCCTGTTTGATTTTTGCCATTCTGATA 1765438 32 100.0 35 ................................ AAAATACGGGGCCTTGGTTATGATCCTTGGGGTTC 1765505 32 100.0 33 ................................ TTGCCGAGTATGATGCAAAACGGGGAGGTACAG 1765570 32 96.9 33 .....A.......................... TGCTTGGATTGTCGTAACTGACCCATCAGGAAA 1765635 32 100.0 34 ................................ ACAAAAGACAAGGGCACTCTTGTATCATTCCTAC 1765701 32 100.0 35 ................................ CAAAAGATATGTTTCGGCAACTCGCAATAATGCAG 1765768 32 100.0 33 ................................ CTCATAGCCGCATACGTGAGGAGTGCTGTTATC 1765833 32 100.0 34 ................................ GAGTGCTGATTGGTGCTTTATAATCGGCGTCATG 1765899 32 100.0 33 ................................ AACTCTCTTTCAAGGGCGTCTATAGTTGCCATT 1765964 32 100.0 35 ................................ CCCGGTATCATACGGCTTATCACCTCACTGTAAAA 1766031 32 100.0 33 ................................ ACCCGTTCCCGTGCATCAGCCATTGGTCTCCTC 1766096 32 100.0 34 ................................ AACAAAATTCCAACGGATTCTCAATTTGCAGCGA 1766162 32 100.0 33 ................................ AGGATTTGCCCTATGGAATCATGGGAGTGGCAA 1766227 32 100.0 33 ................................ AGTCACAATCGACGACTCGCTTATTGCCCTAAA 1766292 32 100.0 33 ................................ CACCGCTGCATACGATGATGCTCTAAAAGCTAA 1766357 32 100.0 35 ................................ AAAGCAATATTGTCAGGCCCTGTGCTTAATGATGA 1766424 32 100.0 35 ................................ CATAACAGGGAATTATGCTGAGATGCAACGTCAAA 1766491 32 100.0 33 ................................ TGGCTACATACACCCTTGCAGCATCTTACAAGA 1766556 32 100.0 34 ................................ TCGTGAATGTTCATTGCTTAACACTTTGCATTTT 1766622 32 100.0 35 ................................ TGTCCTGACAAAATCCATAGCACCAATTACAACCC 1766689 32 100.0 34 ................................ TTGAAGAGATCATCACATCGACAGACCCGTCAAA 1766755 32 100.0 35 ................................ CTGCATATTTCACCTCGCTTTTTGATTTAATTTTT 1766822 32 100.0 35 ................................ CATTGCAGGGCGTTTTGTATCTGTTCCAGAGAGAA 1766889 32 100.0 35 ................................ AATCTTCCCCATCAAAAGATTGTGCGTGATGCCGT 1766956 32 100.0 35 ................................ TGCAGAGATATTTCGCTCTATGCATAATGCACTGA 1767023 32 100.0 35 ................................ AAAACTATCGTCCTTGTGATGATGGTCCTCTTTGG 1767090 32 100.0 36 ................................ CAGTTTTTGCGGTTTGCTGTAGACCAGATATTCTCA 1767158 32 100.0 37 ................................ CGCTTCATGACGCCGATTATAAAGCACCAATCAGCAC 1767227 32 100.0 35 ................................ GATTGCTGGATTAAAGCGAATCCGAATATCGGAGT 1767294 32 100.0 33 ................................ CTGAGAGGGGAAATACCATCAATATTCCCGCAA 1767359 32 100.0 35 ................................ AGTCGAAGATTGGGAGTCTTTTGCTGTACTCGTGA 1767426 32 100.0 34 ................................ AACAAACAGCGCCTCGATGAAATCACCGGCGATA 1767492 32 100.0 35 ................................ ATCCACATAGACAGCAAGATGCTCAGCGGATTCAC 1767559 32 100.0 37 ................................ CGAGATATTGCGCGTCGTTTGGGGATATGCTCAACTG 1767628 32 100.0 33 ................................ AGGAGTCGCTGATCAAGAATCGAATACTCTCTT 1767693 32 100.0 34 ................................ TGTTGATTGGGCAAGGGATTATTTTTCGACCGCC 1767759 32 100.0 31 ................................ CCCTATCAACGACACACTTCCTCCTATCCAT 1767822 32 100.0 32 ................................ TGCCGGGAGGTGGCCGCATGAACGAGTCGCAG 1767886 32 100.0 34 ................................ CAATCCTCTTTTGATGCAGCATTGATTCGCCGAA 1767952 32 100.0 33 ................................ AGTCTGACCGCTTTGCGAACGGTATCTACATTA 1768017 32 100.0 35 ................................ ACGATCTCCGTCTTTGCCCTCTCACGGCTAAACCC 1768084 32 100.0 36 ................................ TATTTGAGTGTCCATTTGTTTGTATTGCATTGCTGT 1768152 32 100.0 33 ................................ ATGGCGATTTCTTCGGCTTGCTTGCCGTGCGCT 1768217 32 100.0 35 ................................ CCGTTGGCGGCAAATTAAGCATCGTAAACCCGTAA 1768284 32 100.0 36 ................................ CGGGAGTTGTGCGGCCTTGAGCGTAGAGCGCGTTCT 1768352 32 87.5 0 ...........C..A...............CT | ========== ====== ====== ====== ================================ ===================================== ================== 96 32 99.8 34 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Left flank : ACCTACCCGCCATTTGTCTGGAGATAACGATAATGCTTGTTCTGGTCACTTATGATGTCAACACCGAAACTCCTGCCGGAAAAAGGAGATTGCGCCGCATAGCCAAAACCTGCCAGAACTATGGGCAACGAGTCCAGTTTTCAGTGTTTGAATGTAATGTTGATCCAGCACAATGGACAAAATTACGGGGAAAGCTTGTCCATGAGATGGATCATGACCATGACAGTTTGAGGTTTTATTTTCTCGGATCAAACTGGCAAAATCACATTGAACACGAAGGAGCCAAAGAACCACGAGATCTTGAAGGTCCGCTGATTTTATAAACGCGAACGTCAAGCTGTACCTCAAATCCCGGTATGTTCGCGATGTTCATATTCTCTTTATTTTGTTGTTGTTATAGTTTTTTGTATCAGGTTTTCGTAAAATGTTATTTGGCATACGAAATGGTTCGCGTTTAGGCGGCTCTAACACCATGAAATGCCTGATTTTACAGTTAGACA # Right flank : TTTACCTTTCAAAAACAGATACAATTTAGGACAACAATCCTCATGAGAGGAGGGAACACCACTGCGATAAGAAGGAAAAATTATTTGGAGGGTCAAACATTCCTTTACACTGCTTCAATTCCGCTTCGTTATGCGTTTTGCAATCTATTGGCATGAAATATCGTTACGCATGGTAGTCCGCTTTTTCTGCAGGCAGCATTTCAGGAATAGGCAAACAACCGAGCGCAATGAAAAAGCCAATCATCATAACTGCGGTTGTTGTTGCGCTGCTTGCCGCCAGCTTCTATTTTTTATTGAGGAAGAGTTCTGCCATTCCACCCGTGGCGATAACAGAAACGGTGAATATCGATATCCCTCAGTCCACCTTTAATATTCCGATCCGACTTGAAATCAAAAGCCTTTCTGATTACCTGAACGCCAAAATCACCGGTCAATTCCTGAACACAACTCTCTTTCTTCAGGAATCAAGAAAAGAAAAAATTGCCCTGACGCTCACGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2544259-2547299 **** Predicted by CRISPRDetect 2.4 *** >NC_011060.1 Pelodictyon phaeoclathratiforme BU-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================================================ ================== 2544259 35 100.0 39 ................................... TATTCATTGATTGCCAGAGTGTAACATTCTTTGTTTCCT 2544333 35 100.0 36 ................................... TTTTCAGCTCGTCATCACTGATCTCAAACCACTGAT 2544404 35 100.0 36 ................................... AAAGGAATGCAACAGATAAGCTACCAATAACGGCCC 2544475 35 100.0 38 ................................... TAATGCAATAAGTGCTGGAGCCGGAAAAGATAGTTAGC 2544548 35 100.0 36 ................................... ATCCTTTAGCACCTCTAAAGGGCTATTCCACGCTGA 2544619 35 100.0 39 ................................... ATACCAGAAAAGCAGCGCCACCGGCACGTGTGATGTCTT 2544693 35 100.0 38 ................................... CTTACTCAGACTTTCATCTGCTGAATAAGCAGAATAAT 2544766 35 100.0 37 ................................... CTCTATTATATGCATAGGTGCTTGTCCCTCTGATAAA 2544838 35 100.0 38 ................................... TTTCTTGTTTTTGCCCGCCACCATTACTGTGATAGCTA 2544911 35 100.0 36 ................................... AGCAGGTTCATATACATCCCGATCACTGTTTTCAGA 2544982 35 100.0 37 ................................... TAAAATAACAAAACAAACGCTCCGGCAATTGCCAGCA 2545054 35 100.0 35 ................................... TTGGTTCTCGACCAGATCATAGACGATCTTGAGCA 2545124 35 100.0 36 ................................... AAGAGCTTTGACCTCATTCATCAGATCAAACAGCAA 2545195 35 100.0 37 ................................... CATGGTGACGGGGTTATAGAGTTGAGCGCGGTATAAA 2545267 35 100.0 37 ................................... CTGCGCATCGACAAGCGCATCCGGAAAGGCCTGCCAG 2545339 35 100.0 34 ................................... GAATTTCTCGATCATTAAATGGCCAGTCATAATA 2545408 35 100.0 35 ................................... TGGATAATTTTTGTTCCATTTGAGTAAATTGTTTT 2545478 35 100.0 39 ................................... GCCAAAAACATTGCATCTTTCTGCTCTTCGGTAACGATA 2545552 35 100.0 36 ................................... GAGCTCATTGATAACTGTCGCGAGGGCTTGCTCGAG 2545623 35 100.0 37 ................................... TCAGATTAAAGTTGTTTATGCAACGTTTTTTGCAATT 2545695 35 100.0 35 ................................... GTTTTGAAAAGCAGCCGTGTCTATGATGGTTGTCT 2545765 35 100.0 35 ................................... TCAGTGAAAATCATCAGTACTGCATTCTTGTGTTT 2545835 35 100.0 35 ................................... CCACATCCGTTGATTGATGCAATTATCCATTGTGA 2545905 35 100.0 38 ................................... TTTAAGGACATCCCCGCCAAGCCTATTTTGATAGAAAT 2545978 35 100.0 36 ................................... CCGTTTAAGTTTTTGCCCTTCCCTTTTTTGCTTCTG 2546049 35 100.0 36 ................................... TAAGCAACAAATCGGCCTCCATTACTTCCTGCTGCT 2546120 35 100.0 38 ................................... TGTTCCCGCGGAAGCGATTACCACCGACGTGCTTCCAG 2546193 35 100.0 39 ................................... CAACATACTTTCTTTTCTGTCAGGCAAGCAAAGCAGTTC 2546267 35 97.1 59 ..................................A TACGAAGGGCACCCACAAGGGATGCACCTACTATTATTTGCTTTGCGGCCTCGGAGGGG 2546361 35 74.3 38 AC..C..CA..........A...C.....G....T TCTCCGTACGGGCACGGCATGCCGTGCCCCTACACGCA A,G [2546372,2546374] 2546436 35 100.0 35 ................................... CAAAGGATTACTCCCCCAGCAAGAACCCAACGAAG 2546506 35 100.0 35 ................................... CCAACAACCTCGAATGCTTGCGATACAACCGGCAT 2546576 35 100.0 36 ................................... TGATGAATCCCATGCCTTCGATAAACAGGAGCCCTA 2546647 35 100.0 37 ................................... AACTCACCGACTTGTTCCCCATACAATTCAAGTAAGG 2546719 35 100.0 34 ................................... TGGGATGGGGCGGGATGACCCCGCCCCTGCGGGG 2546788 35 68.6 92 ..C...T..AC..GC.....T.T....T...CG.. GGAACGGGCACGGCATGCCGTGCCCCTACATGCACATCATTTTTTATTGCATTACATATTGGATGGGGCGGGATGACCCCGCCCCTACGGGG 2546915 35 74.3 34 ..C......AC..G......T.T....T...CG.. GGTACGGGCACGGCATGCCGTGCCCCTACACGCA 2546984 35 88.6 33 .................TA....TT.......... TGGGATGGGGCGGGATGACCCCGCCCCTACGGG T [2547001] 2547053 35 71.4 92 ..C......AC..GC.....T.T....T...GG.. GGAATGGGCACGGCATGCCGTGCCCCTACATGCACATCATATCTTATTGCATACATATTGTGGGGGGGCGGGATGACCCCGCCCCTACGGGG 2547180 35 77.1 50 ..C......AC..G......T.T........CG.. GGAATGGGCATGGCATGCCGTGCCCCTACACCCATCACCGCCCCTACACG 2547265 35 88.6 0 .............G........G......G....T | ========== ====== ====== ====== =================================== ============================================================================================ ================== 41 35 96.1 40 CATCATATCTTATTGCACGCATAGCGGATTGAAAC # Left flank : CCTCAACAAGGGAGTTTTGCGGAACAAGGATTTTTATTATCGTAAGGACAAGGCGGGATGCTTTCTCACTGATGAGGCCCGGAAAAAGTTTCTGGAACTCTTTGAACAGCGAATGTGGGCAGAGTCGCTCGACCCGCAAAGTGGCAAAAGCCTGAATATCCGGCGGCATATTGAGTCGCAGGTGGTCAAAATCAGCGAAGTGCTTGCCGGGACGAGGGCTGTTTATGAACCCTGGCGGTCAGAATGGTAACACCGGAGGATAATTTCAGAAAAGGGCCAAAGCAAGTGAAAAATGCCTTATCGTTTTATGCAATATCGGGTTAGAGGGATACGCGGATAAATGTATCCTCCGGATATTGCATAACTCGCAATTATTTGATAACATGCAGACTGTCGATCAATCAGGAATCAGTACATTGTCCCTTGACATGACTGAAAAATACCAAACCTCCGGTTTTTGCGCCAGCAGCCCTTATCCGGCGCAGCTTTCCAGAGGTAGA # Right flank : TTCTCCGTACGGACATGGCATGATCGTCAATACCTGTCGAGCCGTCGCGGGAAATTTCGGTTCTATAACGAAGGGAAGAGGTTCGGAAACAAGAGTTCAACCGCATTGAGAGGGAAACGAAGTGAGAGGGCGCCTTTTGGGGTATCTGACCCAAGTATGCCGTTTTCGGTTAATGATGAAAGCAATGCTCGGGCTGTTCTCTCTTTCAGTCCGGTGATTCGGCTTGCCTCTCCACGGGGAATCTCGCCTTTAAGCAAGATCATTTCAAGAATGGCGAATGCTTCAGGCTTCCATTCCTGCCTGTCACAATAGTTTTTCAGCCTTTTGGCAAGAGAATCAAGCTCAAAGAGGCTTTCCATAAAGGTTACCTGATCAAGAGAGATCTTCAGGAACCAGGTGATAAAGGTATTGAGTGCTTTGAGAGAGAGGTTGCCGCGCCCGTCAAGATCGCCCTGGCGAGGCATATCGGCATGATCCATCATGCTCATGTAATCCAGACG # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCATATCTTATTGCACGCATAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-59] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //