Array 1 12049-10535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBSA010000068.1 Flavonifractor plautii strain MSK.14.42 BNKPOKIE_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 12048 33 100.0 34 ................................. TGGGAGGTAGCAGACAGAGCGGAAAGCTACAAGC 11981 33 100.0 35 ................................. CCTCAATGACTCGTTATCAGTCCGTGAGGATGATA 11913 33 100.0 19 ................................. CAGTTTATGAGCATAAGCA Deletion [11862] 11861 33 100.0 35 ................................. CAGGGCCAAGAACTCATAAAAATCAAGCTCCATAT 11793 33 100.0 34 ................................. TGTGTCATAGCCTGAACGTCATAGCCATAGCGCT 11726 33 100.0 35 ................................. GGGAGCTGGGTATACTTGTCGGCAAGATGCCAGAC 11658 33 100.0 36 ................................. ATCAAGAGACCCTGGCCTAACAATAGCACCAGAGCC 11589 33 100.0 34 ................................. AGAAACTTTATGAGAAGGATGCAAGAGGAGGTAC 11522 33 100.0 34 ................................. TACACTGAATGGGCAAGCAACGCAAAGGCTTGGG 11455 33 97.0 34 ................................C ATGTTTGTGACCTCCTTTACTGTACTTATAGTAT 11388 33 97.0 36 ................................C TGGAGGGCAGCTGTATCACCAGCGTTGAAACGGTCC 11319 33 97.0 34 ................................C ATAATGAGCGCGTAGGCACGGAAGGGGAGCGCAT 11252 33 97.0 37 ................................C TTCATCACATACCGGGCAACGTAAGCACAGGTTTCCC 11182 33 97.0 37 ................................C ATAAAAGGCATAGGTGAAATCATCAAAGCCTATCTCG 11112 33 97.0 34 ................................C GGCAACGGCCAGGATGGCTTTGCGCTCCTCCTCG 11045 33 97.0 35 ................................C AGGTGAAGACATCCATGGTTGCCCGTCTGCAAACT 10977 33 100.0 36 ................................. AGTAGCTCGTCAGCCTCCAGGCGCTTGTCGTTGCTC 10908 33 100.0 35 ................................. TGGATCTGGAAGGCCATACGAAGCTGATTGATAGT 10840 33 100.0 35 ................................. GAGGATAGCTGCGCCTCCCCCGGCGTGCGGGGCGA 10772 33 100.0 35 ................................. GGCATTGAGACGGGGGCCAACAGCTTCGGCTACCT 10704 33 93.9 38 ............A.........G.......... AGTGAGAAATACGACATCACCAAGCATCCCCGGTATAA 10633 33 93.9 34 ............A............G....... CAGCGGCTGGACCGCGGCCACATGGAGTATGTCT 10566 32 84.8 0 .....C......A...............-..CC | ========== ====== ====== ====== ================================= ====================================== ================== 23 33 97.9 34 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : GGACGCCTATCCGCCCTTTTTGTGGAAGTGAGGCCATTATGCTGGTTTTGATTACCTACGATGTCAATACGGCGGATGCCGCCGGGCGCAAACGCCTGCGGCAGATCGCCAGGCAGTGCGTCAACTACGGCCAGCGGGTTCAGAACTCCGTCTTTGAGTGTAAGCTGGATCCAGCCCAGTACAAGCTGCTTCAAGCCAAGCTGTGCGCAATCATGGACCCCGAACGGGACAGTCTCCGCTTTTATTCCCTGGGAAATCGCTATGAGCAGAAGATCGAGCACTTTGGCTGTAAGCAGACCTACCTTCCAGACGAACCTTTGATTTTGTAGCGTGCGAAGTCCAAGATGACACGCCTTCTCCGGCCGGTTCGCACCCAAAAAGCATAAAGGAAAGCTTAATGGAGCATAGGCGCGTTTGTTTTTGTATGCTCAGCCTTCTTCCCCTTGTGCAAATAAGCAAATTGAGCCAAGCAAACTCCCTGCTCTTTGGTAAAGTTTGCT # Right flank : CGTCTTACAGAGGCGCCTGAGCCGTTTACAGGAGCCACCGCATAGGGGCGCGGGTTGATTCAGATTTTTCACCCCGCGCCTCTATTGTTTGCGCTTCTTTTCGTTGACTGGTCTAGTAGGGAATGATATAATAGGATGATTATGACAAAAACTATGGTGGGAAGATCGTATTATGTGGATTTCAACTGACTGGAAGGACTATGAACTGCTGGACTGCGGCGGCGGCGAGCGGCTGGAGCGCTGGGGCAAGTATCTGTTGGTGCGGCCCGATCCTCAGGCCATCTGGCGTCCGGAGGGGCGGCATCCCGGATGGCGGAGGCACGACGCCCGGTACCAGCGCTCCTCCACCGGAGGGGGCCAGTGGGTCAAGAAGGAACTGCCCCAGCGCTGGACATTGGGCTACAAGGGGCTGACTCTCAACATCAAGCCCATGAACTTCAAGCATACCGGCGTCTTTCCAGAGCAGGCGGCCAACTGGGACTTCGCCATGGAGCGCATCC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //