Array 1 44182-45430 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVOB01000089.1 Escherichia coli strain swine51 swine51_contig_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44182 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 44243 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 44304 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 44365 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 44426 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 44487 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 44548 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 44609 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44670 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44731 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44792 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 44853 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44914 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 44975 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45036 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45097 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45158 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45219 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45280 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45341 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45402 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8910-10080 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVOB01000087.1 Escherichia coli strain swine51 swine51_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 8910 29 100.0 32 ............................. CAGGAGATCCCCGGAATATGGACCCAGAGCAG 8971 29 100.0 32 ............................. GTGGGTAAATTTAAATGAGTGATAACAATGAG 9032 29 100.0 32 ............................. GTCGCAGGCCTGGCAGTTCTTATCGTGATCTA 9093 29 100.0 32 ............................. CGTCGATTCATCGCCCCCGGTGGAGTGAAGCA 9154 29 100.0 32 ............................. CAAACGATGAGCGGGCCAACGAATCGCCGTTG 9215 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 9276 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 9337 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 9398 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 9459 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 9520 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9581 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9642 29 100.0 77 ............................. CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 9748 29 55.2 31 NNNNNNNNNNNNN................ CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9808 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9869 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9930 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9991 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 10052 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ============================================================================= ================== 19 29 97.3 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67812-69060 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVOB01000100.1 Escherichia coli strain swine51 swine51_contig_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67812 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 67873 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 67934 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 67995 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 68056 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 68117 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 68178 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 68239 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 68300 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 68361 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 68422 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 68483 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 68544 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 68605 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 68666 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 68727 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 68788 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 68849 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 68910 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 68971 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 69032 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //