Array 1 181006-179512 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNRB01000001.1 Klebsiella michiganensis strain 502761-17 502761-17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181005 29 100.0 32 ............................. GAAGCGCTCAAAGAGATACTTATCACCGGCAA 180944 29 100.0 32 ............................. CGAAGGCTTAACACAAGCGAGTTTTTCAGAGA 180883 29 100.0 32 ............................. ATATGCCGATCCCGGTTGATACTGGCATGGAA 180822 29 100.0 32 ............................. CTACGAGGGGGATTCTGGCAGCACTATCAGCC 180761 29 100.0 32 ............................. AACCCGTCAGACAGTGGGCCTGATACGAAAGA 180700 29 100.0 33 ............................. GAGTTCAACGAGACCGATCGCACCGGAACCGGC 180638 29 100.0 32 ............................. GTTGAGTACTCAAATAGATATGAGTCTATGAG 180577 29 100.0 32 ............................. CCGTTTGGCCACTCATCGAAGCGGTCACGAAA 180516 29 100.0 32 ............................. GTTTTTTTGCCATAATTAACTCCGAAAATAGT 180455 29 100.0 32 ............................. CGGGGATAGAGGATTTCCGTTTTCACGACCTC 180394 29 100.0 32 ............................. GGTTTCGACTACTCCATGAATACCGTCTCCTC 180333 29 100.0 32 ............................. TTGACGGGAGGGTATGGTCTGCGATTGTCATT 180272 29 100.0 32 ............................. GCACAACGGAATACTTGTCACTGACTATAGCT 180211 29 100.0 32 ............................. AAAATCCAGCAACACTTACATCAACCTGAGGC 180150 29 100.0 32 ............................. TGTTCGATAACTTCTGATTTACGCATGGTTCC 180089 29 100.0 32 ............................. AGCAGCGCGCTAACTGGTTCCAGATGGCACAG 180028 29 100.0 32 ............................. GGCCAGGCGGTCGTAGGGGCGAATCAGTGAAT 179967 29 100.0 32 ............................. AACGTAAACGGGCTGGGCTTTACTGAGCGGAT 179906 29 100.0 32 ............................. AGATTGATGCAGACATAGCGAAGGCGGAAGAA 179845 29 100.0 32 ............................. ATTACGCAGGTCTTCACGCAGCGGCGCGGCAC 179784 29 100.0 32 ............................. TCGCGACAGATTGGGGCGACCTGGTATTTTGC 179723 29 100.0 32 ............................. TCTTCAGAGCGCACCCTTGCTGTTCAGGCTGC 179662 29 96.6 32 ............T................ CAATGGTAACAAGTGATCCGAGCGCAATCATC 179601 29 96.6 32 .............T............... GACTCACGAAACGCTTGGTTGATGTCTGAATG 179540 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACATCGCCTGATGGCTACGGGAAAGGCGCAGGGGCTCTATTTTGGTCTGCCGACGATGGCGACGGCGAATGCCATGTTCGATCGTATGTCGGAGAGCTGGCTGGCGTTGTATCAACCCGGTTCACGGCCAAGCCTGGTGCTGGCGCATAGCGCACGTGGATTAATGGATCGCTTCAATCAGTCTTTGTGGTCGGGAGATTTATCGGGTTCAGAAGAACCCGATGAGCTCCAGCCATCCAGCCAGGGATGCGCCGCCTGGTTTGCCGACAGTAATAAAAAAGCGCTGTTGGCCGAGGTGGGCGTTGGCACGCTCGATCAGGCGATGATGGCGGTGATGCCGTTTAAACACAATAACCTGCGGATGTTAGGGCTGAATAATAAAATCTTGCTGGCGGATGAGATTCACGCCTATGACGCCTATATGTCGCGGATTCTGGAAAGTCTGATTGAAAAACAGGCCAGCGATGGCAATACCACGATTTTACTTTCCGCCACGCTCT # Right flank : CCCGGAGGAAACGTGGCAACAGTTCAATACACGTGTTCCCCGCGCCGCCATCCTTATTATCCTGTACTTTATTTTTTCCAGCATTCTTTAGTGTGGCAAAGTCCGCTTCCAGGTAATACTTGCCAAATTTTGGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACCGATGTTTTACCGATGCTGGGTTCCGAGCCCAAATCCAACCCGTCCTGCCAGACGCGCTGCCAGATATAAACCTGGCTGTCGGCGATGGATCGCGTGCTGGCAGCCAGTAGCAACAATGGTATTAAAAAATGAAAACGCATCATGGCGACAGTCCTTGTTGCCTGATTTTATCGTTAGTCTATTTTGAGGCGGGTCTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATTACATCGCGTCCGCGATGCTCAATACGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAGCTGTACGTCATGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52874-54582 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNRB01000021.1 Klebsiella michiganensis strain 502761-17 502761-17_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52874 28 100.0 32 ............................ TATAACTCGGCCACAGGTCGGCTTATCCTGAA 52934 28 100.0 32 ............................ ATCAGGCAAAACATTTCCTGCATGTTCGCGAT 52994 28 100.0 32 ............................ TGATCCGCAGATTGTACCGGCGTCGACCACAG 53054 28 100.0 32 ............................ AGACCGATTTTATCAGCCAGGGGGATGATCAC 53114 28 100.0 32 ............................ ATGTACTGTGCCAGCAGCTGAATGCGGAAGGG 53174 28 100.0 32 ............................ GCAGTGTCGCGTTCCAGAAACAGCCTGATTTT 53234 28 100.0 32 ............................ AATATAAATTGCCTGAATTTCTTGCGCGTACT 53294 28 96.4 32 ......................C..... ATTTGCCGAAAATGCTGCCGCAGTTGTATTTG 53354 28 100.0 32 ............................ AGTATCCTAAAGAACCGTTGCGGCGGCGGTTG 53414 28 100.0 33 ............................ TCTACGTACAGCAGAGTAAAGCATGAAGTCAGA 53475 28 100.0 32 ............................ TTCCTGGTTTCACCATCTACAGCTTTCACCTG 53535 28 100.0 32 ............................ TTCAGGGATATTCGCGATGTCCGCCTGAGCAG 53595 28 100.0 32 ............................ ACAAGTTGTAGGCGGCCATCAGGTAGAATTTT 53655 28 100.0 32 ............................ ACACCAAAATGGCTTCATGGCTCATTGAGTGG 53715 28 100.0 32 ............................ ATCAGAGTGCCGGCAGCTTTATCGCCGGCACG 53775 28 100.0 32 ............................ TCAGAGCGGTGATTTCTGCGAAGGTTGTAGAT 53835 28 100.0 32 ............................ TTACAGGTGACATCGCACACCCCTGATACCTC 53895 28 100.0 32 ............................ TGTGGCAGCCGAACAAAAACGGCGACGGGATT 53955 28 100.0 32 ............................ AGTGCAGCAAACCAGAGAAGGGCGCGCCGGCT 54015 28 100.0 32 ............................ AGAAGAAAAGGCAGACCCGATCAACGAAGAGA 54075 28 100.0 32 ............................ GTATTCGGTCCAGTGCCTGATGGCGCGGATGC 54135 28 100.0 32 ............................ CGCCGCGAAACTGGGCCACGCCTTCAGCTGCT 54195 28 100.0 32 ............................ ACCAACAAACTGCAGGCAGAGCAGAAAGCCGC 54255 28 96.4 32 ............G............... ATACGCCGTGATGAACTGAACGGAATCCCGAT 54315 28 96.4 32 ............G............... AAACTTCGCGCGGATTTCAGCGATTTTGTTTA 54375 28 96.4 32 ............G............... CGCTACTCCGCAAAAATGAAATTCGTGTGCTG 54435 28 100.0 32 ............................ ATGTTGCGGAGAATCCACAGCCTGTTCTCAGT 54495 28 100.0 32 ............................ TGCACGAAATCAACGTTGCCCGCTCGGTTGCC 54555 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTTATCCATCAGGTGGTGGATAAATTTATCGTCGAGCTGCAGGTTCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTCAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCAATGGCGCGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAATGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGACAGGTGACCGTTGAACTGGATAAAGAGAAAAATGCGCTGACCTACGACTTCCAGAGTGCGCAGAAGCACAAACCGGAAGCTGCGCATTAAGTTTCGGTACTCAGTGACAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCTATGTCCTGGACCCTTTTTTATTCCACTTTTTAACTTGTTGATTTTAATAAAGAGAAAATATAGCGTAAAATTATGGTGGCAGAGAGGATGTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTTGTTCGTTCA # Right flank : AAGAGCTTGCCCACACTGCTGTGCAAGCCAAACGAGTCTAAAGAAATTGCCAAAGTAATAGGTTATTTTGCAAGTTGCGATGAATGTCACCGTATTGCATCTAATATACTGTTTTTATAAACAGCTATCGACTTTGAGCCACAGGATGTGACTATGCCCGCGAAGTATATTGCCCCCTCGGATTTAAAAACGATACTCCATTCAAAACGCGCCAACATTTACTATCTGGAAAAGTGTCGTGTGCAGGTTAATGGGGGGAGAGTGGAGTATGTTACCAGTGAGGGGCATGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCCATTATGCTAGGAATGGGAACCTCTGTTAGCCAGGCAGCGATGCGTGAGTTCGCCCGCGCGGGTGTGATGGTAGGTTTTTGTGGTACGGATGGCACACCTTTATATGCCGCCAATGAAGTCGATATCGACGTTTCCTGGCTATCGCCACAAAGTGAATATCGACCAACGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //