Array 1 29743-29175 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKMF01000085.1 Klebsiella michiganensis strain KO13459-1 13459-1_S11_R1_merged__paired__contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29742 28 100.0 32 ............................ AATAATCCGCAACCTGGCGCATGGGAGGATAT 29682 28 100.0 32 ............................ TAGGCGTGATCACAGCCTCGGAAGTTCACAAC 29622 28 100.0 32 ............................ TTAATCGACTCAGCTTTCCAGCGGTTAGGATT 29562 28 100.0 32 ............................ AAAATGGCCGGAGGCGATCCGCTGCAGGGCTT 29502 28 100.0 32 ............................ GAGCTAAGGAGGCCGAAAAATGAGTAAGTCAT 29442 28 100.0 32 ............................ TCGCGGCGAACGGCTCTCAAGCGGGTGAAGGA 29382 28 100.0 32 ............................ CACATATCGCCGAGAGAAAAGTCGATACGCTC 29322 28 100.0 32 ............................ TATATCCCGATCCGGGGCGGATATTCGGAACC 29262 28 100.0 32 ............................ CTGGACAGCCAATGCGACAGGTTATGGCTTTA 29202 28 78.6 0 C...........A...........TGGT | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : ATCAAAGGATGGCGTTGCGTCAGCCGGGTGCAGGTGAAAAGCAGCCCCGAGCGGCTGATGCGCCGTTCGGTGAAAAAAGGCTGGATAACGCAGGATGAAGCAGATGCGCGATTGCTTACCATGCGGGGCGAGTCGACAACACTCCCCTGGCTGAATATGAAAAGCCTTTCAAATGGACAGATATTTCCGCTATTTATTTGTCACGGCGAGTTGCGGGCGCAGCGCGTCGCGGGAACATTCAGTAGCTATGGGCTGAGCCATATCGCGACTGTCCCTTGGTTTTAGCATTTCGGTGAGAACTTTCTTGTTGAATGTTAAAACGAACCAGAACCGGCGCTGTATTTTGCGCCGGTTATTCGATCGCTACAGAAACCCTTTCTTATGATGAGCCTCTATCTTGTTGATTTTACAAGCTAGTTATATAAGGGGCGGAAAAAGGGGGTTGATGAGATTGAGGTTTTTTTGATTTTAAATCAAACTTTTACGTTGTTTTGGTTTCA # Right flank : GGATTAAGCATATGGTTATAGAAAGATAATTCGAAGCTTGCTCTCACAGAGAGCTACGGTCATGAATAGCGTGAGTTTATAACTAAATAATGGTATCAGGCAGGAATATAAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGCTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 38307-38169 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKMF01000085.1 Klebsiella michiganensis strain KO13459-1 13459-1_S11_R1_merged__paired__contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38306 18 64.3 32 ----------.................. TGAGAGTTCGCGCCAATATTGCACGCAGCCGT 38256 28 100.0 32 ............................ GTACTGACCGGGGAGAGGACCACTCGTTTTAC 38196 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 88.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : AGAGCTTGCCCACACTGCTGTGCAAGCCAAACGAGTCTAAAGAAATTGCCAAAGTAATAGGTTATTTTGCAAGTTGCGATGAATGTCACCGTATTGCATCTAATATACTGTTTTTATAAACAGCTATCGACTTTGAGCCACAGGATGTGACTATGCCCGCGAAGTATATTGCCCCCTCGGATTTAAAAACGATACTCCATTCAAAACGCGCCAACATTTACTATCTGGAAAAGTGTCGTGTGCAGGTTAATGGGGGGAGAGTGGAGTATGTTACCAGTGAGGGGCATGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCCATTATGCTAGGAATGGGAACCTCTGTTAGCCAGGCAGCGATGCGTGAGTTCGCCCGCGCGGGTGTGATGGTAGGTTTTTGTGGTACGGATGGCACACCTTTATATGCCGCCAATGAAGTCGATATCGACGTTTCCTGGCTATCGCCACAAAGTGAATATCGACCAACGGAG # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //