Array 1 79532-79203 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITJ01000081.1 Hafnia alvei strain PCM_1210 866, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 79531 28 100.0 32 ............................ AAGTGCGCGTTGATTGCCCACACTCTGAATGA 79471 28 100.0 32 ............................ TGCGTGCCGATAGCTTCCATAAATGACCGGAA 79411 28 100.0 32 ............................ GATATACGCAAGAGCCGATGCTGCCGGGGGAC 79351 28 100.0 32 ............................ ATTACAGATGCCCATGCAACGCCAAATACCAG 79291 28 100.0 32 ............................ AGCAAGTCAGAAAAGCTAGCATCACTTGTTAT 79231 28 100.0 0 ............................ | G [79205] ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAGATTGAGTCATTTTAAACCTCGAGAGTGACTTAATTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACCGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATTGTTCGGGTGAGTCTAAGCGCACTCCATTATGGCATAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTAATTTCAACAATGAAACGGGCTGGATGCATTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGGAAATGAGGGGGTAAAATGCAAAAAACTTTATTTTCCAGCCAACCCTTTTTTTTGCCTACCTATAACTCATTGATTTTATATAAGTGTTCATCTGGAACATAAAAAAGGGTTATGCAGTGAGAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : TGATGAATTATGCCATCGCGGGCGGCGCTCTACAGGCAGATTAGAAATTCTGCGTGGGTTTCTGCCCGAGGGACAAAACACTGGAATATAAAATTGGAATTTAACACTCACAGGGATGGGTAAAATGATTAGGGTATTGATATTACTATTTTTTATTTCTTCACCTGCCTTTGCTGTCAGCGATATTAACAACGCTGCCAAGGTGGCTCTAGAATTCAACAAATGGTATTTGCAGCAGATTGAAAAAGATATCTATCCGTTGCTGGGAAGTGGTAGTCCAGAAATGGATGAATACGTGACCGCTGAAACGTTAAAAAAACTGCATAGGGCAGTGAATAGCGATGATGAATTCTATGACGCCGATTTTTTTACGCGTTCACAGGACATTGGGGCTGACTGGCCGAAAAATGTCACTGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTATGTTTCTTATGGGAAAGACATCTCCCACACCGTCATTGACTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 276870-277076 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITJ01000052.1 Hafnia alvei strain PCM_1210 832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 276870 28 100.0 32 ............................ ATAGGTTAACGCGCTGCCGATAGCATCAACGT 276930 28 100.0 31 ............................ GTGAAACTTGCCCATCCTGAGAAGCCCGCAG 276989 28 100.0 32 ............................ GGCATTGTGCTAGCGGTCGCGCCGACGTTTTA 277049 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATAATAGCAAATTAACCATGCGTAGCAGATCTCATGCTTTTAACATCAGATCTCCAAGGTTATGGCCAGCTAACTCACCGTTACCGTTAAAACGATATTCAAACATAGCAGAAGCCCGTTCGCGTTGGCCTCTATCGCGTATTTCGCTGATCCACCATATTGGCGCCATATATCCCAGAGATGAAATTGTTTTCGTTGGGGGGACTAGCGCACATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCATTCTGGAAACGAGAAGATGCAGAGCAGGGCGAACGCTGGGTCGATGCCCAGAACAGCGACCACCAAGCGGCAAAGCGTTAGTAACCTCTTCTAACCCTTTTTTTTTGCCTCCATGCTAACTCATTGATTTTTAGTCCCTCTAATGAGCCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCCACCGATCTGATTAATAAAACCTTTCCGCGAATATCCTACA # Right flank : AGCTGTTGAAATTAATGTTGAGCCTTATGTTCGTTGGGCTAAGGTTTGTGCTATCAGCTACTTGGTTGAAAATACGTGGATTGACGGTGATTTAGAGGCTTTTGACGCACGAGATCACAACGAATTCATTGATAAAGAGCTTATTAGCCGCTTATCACGTGGTGTAGTAACAAGTATCAGAGTTTTATAATACTTTTTAGGGCTCTCTGCTGGGAGCCCCTTGAAACTCATGATGTTCTAGCTCAACTGCTGCAATGCCTTCTCAATGGCCATGCGCAGCAGATCGCGGTCGTGGCGGTAGGGAATATCGCTGGCTTCCAGCGTTTCCTGCACCACCACGCGGTTTTCCATTCCTTGAATGTTGACCTTTGGTCCCACGACAACGCCGTCGATAGCATGCCCACCGATGGCTTCTTCCATGATGCGCAGTTTATCGGGCAGGGTTAATGCCGCAGCCGCGACGCTCAGCTCTTTTCCTAGATTACCGATGTAAATCATAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 280956-281283 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITJ01000052.1 Hafnia alvei strain PCM_1210 832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 280956 28 100.0 33 ............................ CTGATTGGGTGATGCGTCTCTACCGCTGTGCGT 281017 28 100.0 32 ............................ CGTGATGCCTGCGGCCTGCGCTTCGTCATAGC 281077 28 100.0 32 ............................ GCGAGAAGGTACGCTTCGGTCAAACTTTTTCC 281137 28 96.4 32 ...C........................ ATCGTGCGGCAGTGCCAGCTGTAGTTCTTCTA 281197 28 92.9 32 ...C........A............... TTCCTGCTGATATCCCCGCTGTATATGCAGAC 281257 27 75.0 0 ...C........A....A...-A.T..T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 94.0 32 GTTTACTGCCGTGCAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAATCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTTTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCTATTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTCATTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : TGTGAAAGTAAGTAATTGAATTAAATGTATATTATTTTATCTTAAGTAAGATGAGCCCCCAAAAGGGCCCCTGTGTTTATTTAGTAAACTATTTAGCAATGAGACATGAAAATCATATCATGTCCTTTGGATAGTTTTCGAGGTAGATAATGTCATCTAGTTTATAGGTAGCCCCTGACTGTTTGAGTATTATTTGCGCACTATAGCTCAAGCAAGCATTAGAGGTTGCGGCGGGTGAGCGCGCAGCCAAAATCATGGGCCTTCTGGGAACAGCGAAGATGGATGGCCTTGAGCTGCATATTCGCCAGGTGATCGAACGCCAATTCGCACCGCTGTCGATCGCGGTTTCGCATGGCGTTCGATCAGCATTTCGCATCACCCCCGATCACCGATTAGCATCCTGCCGATCACTCCGGGAATTAACGCTTTCTCACACGGCCTTCATTACTGATTTTTTATGTAAATGGAGATATCAATGGCCAGTAAGAAAGTACCCAGGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //