Array 1 9478-13088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000002.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 9478 30 100.0 35 .............................. TTTTTTGTGTAAAAAAAGCGGAGCTATCACTCCGC 9543 30 100.0 37 .............................. CATCAAACTGGGAAAACCAAAAAAGCGTTACTTGATA 9610 30 100.0 38 .............................. CAAAAATATATTACAATAATCATGAAATAAAAGAAAAG 9678 30 100.0 40 .............................. ATGTAAAACATGCCCCCTATATGCTTTTCAATTGCCCTGA 9748 30 100.0 35 .............................. TAATTTTATTATTCCCAACCTGCCAACCGTTTCCG 9813 30 100.0 36 .............................. ATTTTTTCACGTCTGAATATCCAATTAGCTTCATGT 9879 30 100.0 35 .............................. CAATGCAAGCCATTTCGCTATTTTCTGCGTTGTTA 9944 30 100.0 34 .............................. TTGTAGTATCAGACAGCGGCGCTGAACCGCTGGC 10008 30 100.0 36 .............................. AAAGTTCAATACCAGCACCAAGGCGCAATAGCTTTG 10074 30 100.0 36 .............................. ATAATTGCGCCTCCGCCTCGATTTCTTCCCGTGTGT 10140 30 100.0 35 .............................. GTAAAGGCACACTCTCGGCAGGCGGAAGTGAAGTG 10205 30 100.0 35 .............................. GTAAAGGCACACTCTCGGCAGGCGGAAGTGAAGTG 10270 30 100.0 37 .............................. AGAGATCCATCCAGCAATTTGCTCCTCATCTACTCCA 10337 30 100.0 36 .............................. TAATATTCAAAATCTTCTGCTGCCACGATGAAACTG 10403 30 100.0 34 .............................. ATTTTTTCGTTCCGAATCTTTTTGGCGACTTCGG 10467 30 100.0 35 .............................. CCGCAAGGGAATGGTAAACTCCCGCCGCGACGGCC 10532 30 100.0 36 .............................. GATATTATTTTTGAGGGGTATAACGCGTTTAAGACT 10598 30 100.0 35 .............................. TGGGGTCATGGTTTCGTGCATATAAGAGCGATAGA 10663 30 100.0 35 .............................. TTTTGTTAATGGTGCTTATGTTTTTAGGGCTGTGA 10728 30 100.0 35 .............................. CCTCGTCTATTTCCTGCTCAACAAAGCCATCACGC 10793 30 100.0 38 .............................. AGTCCGATCAGGTTGTCCAAGTCGAGCTCAATGACAGC 10861 30 100.0 36 .............................. CCGAAAAGATTTGATAATCCTTCACCGCTACGACAA 10927 30 100.0 36 .............................. TCGCGTGTCGCAAGTTGATTCCGATTTCGGTACGGT 10993 30 100.0 36 .............................. TCCTTCTCTCTTTAAGGACTCGCTGGCGTCCTTTCT 11059 30 100.0 36 .............................. ACACACCGAGGGAACAGGCATGACACAAGATATTCC 11125 30 100.0 34 .............................. CTTCAGCAAGTTCTTGTTGATACTGTGTCACAAG 11189 30 100.0 38 .............................. ACTGTTGCGATGACGCGCTTCTTGTCGTCAATAATCTT 11257 30 100.0 39 .............................. TGACGAATGGTCGATCCCATGCGCTCGCTCAACGGTTTA 11326 30 100.0 36 .............................. ATTTTTCGTCAAATGTTATTTTTTTGTAGATTACTT 11392 30 100.0 38 .............................. TCGAGAATTGCGAGTTGAGCGAAGAAATCGCGAGCTTA 11460 30 100.0 37 .............................. CGTTGGTCGGAGGCGGCATATTGATTATTCTTTATGC 11527 30 100.0 35 .............................. TAAAATAAGATACCTGCAATTCCACACATAGGCTT 11592 30 100.0 34 .............................. TGACGATCACTTTCCCACCGTCAACCGCTATGAC 11656 30 100.0 36 .............................. TCCCAGCGCACGCTCGGATTCATCACGCGCGGAACA 11722 30 100.0 35 .............................. ACAGCTCGAACGCTTTCTCTGACACGTTGCATTCC 11787 30 100.0 38 .............................. TCGCTTGACTGACGTTGCCGTTGAAAATATATGACTCG 11855 30 100.0 34 .............................. CCAGCCTAAATCGCGACTTGGCCTATTATGTTGG T [11867] 11920 30 100.0 39 .............................. AAAAGTGAAGCACATCGGATAGCTCCTCAAAATAGCTGC 11989 30 100.0 35 .............................. ATTCCAACAAAAACACGGCGTATTGCTCCCATGTC 12054 30 100.0 35 .............................. TTTTTCTATCGCCGGTCTCAATATAACCGCTTTTC 12119 30 100.0 37 .............................. TATAACACTTTTGCATATGTAGATGTCATGGTGATCG 12186 30 100.0 34 .............................. TATTCATAAAGAGCTTTTACTTCATTCATATTAA 12250 30 100.0 36 .............................. AGTTTTGTTCCCGTCTTCTCGATCCCTCCCGAGTTT 12316 30 100.0 36 .............................. GCGCTAATCGCCGATAAACTATTAACGTTCAGCTTA 12382 30 100.0 39 .............................. TTGTGCAATTTGTTGTAATTCAGTAATTACATTTCGCCA 12451 30 100.0 37 .............................. CATCGAATGGTTAGAAAGAAATGACAAAGGCGCTATG 12518 30 100.0 36 .............................. GTTTCCATATTTCTCAACCAGAGAGCGAATCGAATC 12584 30 100.0 36 .............................. AACCGCGTCATCCCCGACGCGGCGGCGGGATAGAGG 12650 30 100.0 39 .............................. TTCACCAAAAGACAAGACAACGAACAACGAGCGGGTTGT 12719 30 100.0 36 .............................. GTTTACGCCGTAATATCGCTCTCCCATGTATTTCGA 12785 30 96.7 37 .................A............ TCTTGGAACTGTGGCAAAAAGCATTAGTTGCCGCAAC 12852 30 100.0 40 .............................. CGTATAACCCATATAAATACAGTAGCTTTGTAACGTATGA 12922 30 100.0 36 .............................. TATTTTTCATTCAAACGAATAAAATGAAAAACATTA 12988 30 100.0 41 .............................. ACACATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 13059 29 83.3 0 A...........T..G...-...C...... | A [13075] ========== ====== ====== ====== ============================== ========================================= ================== 55 30 99.6 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAATCCGGCGCTGTCCGACGACATCATCCGCGTCGCCCGCTCGCCGATCCGCAAACTTGGACCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTTGGCAACGTCCCACACGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGATTCGATGATGCCCGCGATGCGGAAGCCGCCGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGGAGAAAAACAAAAGCTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAAACAACACGGCTGAACGGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAACTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGG # Right flank : CACTACAGTACCGTACAACATTTTCCCTCTCCGATGCAGGAGTTTCCGTCTGTACTTGCGAATGGATATACTGGAACACGTTCAAAGAGAGGTGATCAAATGGCCATTGATCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATGCACGAACACATTGATTTCCGCCATTTGTCCTTCCTGTCCGAAGAACTGTTCACTGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAGCTGAAAGGGGAAAATGGGCTGATCATCGTTCATGTGGAGAACGTTCCGATCGCTGTCTTCAGCCATGATGCCCTTCGCGAGGAACCATCCGTGTTCTCAATCGCGTTTCCCTTTGGCGACGTGCTGCAGTTTCGCTTTTTCCCCGTAGAGCTGCGCAAGAAACATTGGAGAGACTACATCCGGCATGACAATCCGATCGCGGCTGCCCTCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 21088-23300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000002.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 21088 30 100.0 35 .............................. CTCTTATGCTTCTCATATGCTTCTTTCGCTTTTTC 21153 30 100.0 36 .............................. TACGTAAAACTGGATGTCCACGATTTTGACGCAGTC 21219 30 100.0 36 .............................. CCTTTTACTCAAATGAGAAACCAAATCCGTCGACAA 21285 30 100.0 36 .............................. TACGTAAAACTGGATGTCCACGATTTTGACGCAGTC 21351 30 100.0 37 .............................. TAATTTCGTTAAGTTTTATGTTCAGAATCAATTGTAG 21418 30 100.0 35 .............................. ATAAAGGAGAGGATTCTATTATGAAAAGCCTTGTG 21483 30 100.0 38 .............................. TCGTTTTTCTTTTTCCTTTTTCGGCGACAAAATACACC 21551 30 100.0 37 .............................. TTTTTACCGTAGAGGCGTTGACAAGTGACCAATACGA 21618 30 100.0 37 .............................. TCAAAAAACGGTTCGAGCCCATGAAGGAACACAGCTG 21685 30 100.0 36 .............................. ACGCTAAAGACAGCTTAAAATATGGAGATTTTTATT 21751 30 100.0 36 .............................. CTTTGAACGCCAACTTGAAAAATGTTACAATTTCTA 21817 30 100.0 37 .............................. CTGGGTGTGGTTCGAGGAAGCCTTTGAAATCGAGACA 21884 30 100.0 36 .............................. CGTCCGATCGCAAACGAATATTAATTCGCTCATCTC 21950 30 100.0 39 .............................. TAATCGGTCTAAATGCTCCTTGATAAAGACATTCGGCAG 22019 30 100.0 38 .............................. ACAGAAGAGCAAGTCAAGGCATTCCGAATTGCAGACAA 22087 30 100.0 36 .............................. TTCATCGTGCAAAAAATCATGTTCCAGACCAAGGTC 22153 30 100.0 37 .............................. TGAAACGACAAACATTCGGCAATTTCGCGTCACGACA 22220 30 100.0 38 .............................. TCAAGTGGTAATTTTGGACCGGCTGAATTTTAGGATTC 22288 30 100.0 35 .............................. TTCAAATTTCATCACATTGTCTACATAACGAATCA 22353 30 100.0 36 .............................. AAAAATTCGGCGTAATGCAGCACCTCGAAAACGCCG 22419 30 100.0 35 .............................. AACGTACCGCCACGCCACCTTTCGGTTGCGTTTGC 22484 30 100.0 38 .............................. TTTCTTCGTTGGCTAGCGTTGGTCTTTCGGTGATGGTG 22552 30 100.0 37 .............................. CCAGACGACCGGAAAGAAAGTCCGGTCGCTTCGAACT 22619 26 86.7 36 ............----.............. TCTTTCCAGAACGGGATAATTTGCTCGCTCGGAATC 22681 30 100.0 35 .............................. TAAAGGGACGTCCGGAGCATCATGTGTCCAACTTT 22746 30 100.0 35 .............................. AAACGAAAGTCATGACAATGTGACGAGGGTAACGA 22811 30 100.0 36 .............................. TTAGCTTTTCCGCTTTTGATTGCAGATGTTGCTAAC 22877 30 100.0 36 .............................. AATTTCAGTGCCAACTGTGTGATCAAATGGAATTTG 22943 30 100.0 34 .............................. TACTTTTTTCTATTTGCTTTCGTACGGCATTTCC 23007 30 100.0 34 .............................. CCATCTGAACGTCAAGAAATCGACAACCTTGCCC 23071 30 100.0 38 .............................. AAAGATGACGATATCGTGATATTCAGTCATGACAATGA 23139 30 100.0 36 .............................. AATTTACAGCCACTTTTGGCTTCTTTTGCGACGTTG 23205 30 100.0 36 .............................. CTTCATTCATGACGGCGCGCTTTTCATATTCTGCGA 23271 30 93.3 0 .....................A.C...... | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.4 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCCCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGCTTGGGCGCCTGATGGTGTCGCCGCTGTTGGCTGCGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAAGCGTTGCTGATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTACGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGCCTGCTGTTTCCGATTGGCGGATGAAAACAGGGGGCAAGCTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTCTTTTCGCGTCAAACTCCTACAGCCAACGCAGCTAGACCGTATTGACAGAATTTTTGAAACGTGCTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATGGTTTTG # Right flank : CTATTTCCCGCCACAGCTGAGCCGCCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGAGCAAATGCGAAATGGCGCATGCCCAAAAAACGTGGGAGGGATAAGGAGGAATTTGGACGCGAAGAGCGAATACAGTACGGTGAATCCGACAATGCAGGGAGGGAAAATGTGGCCAAACAGCGCGTCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACGTTTTTCGAAGAGTTTTTGCTTCTTTTCTTTCCTCACGTGTACGAGCACATCGATGTTCACCATCTCTCTTTCCTCTCCGAAGAATTGTTCACCGATGTGACGGCTGGGGAAAAGCATCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGCATTCTCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1522983-1521885 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000002.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1522982 30 100.0 35 .............................. GTAGAAACGGTGTGTGCAACGCCCTAGCGCCGCAC 1522917 30 100.0 35 .............................. TAATTCGATTGACTGAAGAAACGAAAAATAAGTTT 1522852 30 100.0 39 .............................. TTGAAGGTACGTGGAAAGACATGTCTCCTAAAAGTGGTG 1522783 30 100.0 36 .............................. ACGTATAAATTCCCCAACCAGAAAACCGTTGGGAAG 1522717 30 100.0 36 .............................. CCAACAGCGAAACGTCTTCATACACCTGTTTCGCCC 1522651 30 100.0 40 .............................. TCACCTACAAGCGCTCATCGTGACATACTCCCGCCACCTA 1522581 30 100.0 36 .............................. AATTTTTCACAGAACGAAGAACCGAAGTAAGCAAAA 1522515 30 100.0 37 .............................. CTTTCTCGACTTTTGCCAACTCTGCCGCCAACCAATC 1522448 30 100.0 38 .............................. AATTGGTGTTCTTCCGCATATCATGCACCGATCGCCGA 1522380 30 100.0 35 .............................. TATTCCGAAATCAACATCTATCTCAATGGATGTTT 1522315 30 96.7 37 ............T................. ATGCGGCTGAACAGTACCTCAAAAATGCCACAGGCGT 1522248 30 100.0 35 .............................. ATGAAATCCAATCAATGAAAAGGGGTGCATGAACT 1522183 30 100.0 35 .............................. CGCCTGTAGGCGTCGAAGTGGGGGTTTCTTGTCGA 1522118 30 100.0 40 .............................. AAATCAAATCTCCAAGCCGTATAATGATGGATGAGGTTGG 1522048 30 100.0 38 .............................. TCGCAAACGCTCAAACAATGTTAAAGATTTAGGATTAC 1521980 30 100.0 36 .............................. TCGGCCTCAAAACGTTTCTTGAGATACTGATGTTAG 1521914 30 76.7 0 .C...C..........C...AA.....CC. | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 98.4 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AACGTGCCCGCCTTGAGCGCCAGAAAATCGAGCAGGAAATGCTGGAGCGGAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCCCTCCTCTCCCCCGAAGAACGGCTTGTGGCCGAAATTGAGCGGCTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAGGTGATCGAGCAGCAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGCATCAGAGAATGGGGAAAAGCCGTTAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAAAACCGGGGGATCGACGACAATGTTTTTTTGTGCCGAAATCCTACAGCCATCACGGCTGAGGTTGTATTGACAGAATTTTTGAAACGTGATATTCTAGAAACAACCCAAAGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : TCTCCAACTCCCGTCTCCCACCCATATTTGAATCACGCTTTCATCCGCACAATTTTTCTCTTTGTGTGCTGTCTTCGCTGGCAATATGGAGAAGACCCGCCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGATAGAAGGAGCAACATTTGTTTGCTTCCAGATGGGCGTTTGTTTTTGCCTTTTCACGATGGGTATAGCCAACAAAGGGAAGGGGAACGGTGATGCGGTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCACGTGACGATTCGGGAAGAGATGGACGAACGGACGGTGATCCGCACCGGGGTGACGGCGGTGCTGCCGCACGGGGGCAATTCGTTTTTGGAGAAAGTGCCTGCAGCTTGTTTTGTGTTGAACGGGTT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1532812-1532650 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000002.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1532811 30 100.0 38 .............................. ATTGAGGGAGATGGAGAAAAAATCAATATCTTTATTGA 1532743 30 93.3 34 G................A............ CCCACATGATCAGGTGGATCATGTGGGCTTTTTG 1532679 30 93.3 0 G.G........................... | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 95.5 36 ATTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TATTTGTTGAGTTAACGAAAGAGGCAACTAAGTTAGCTGATGAGTATGAGCGCGTTATGACAGCGGAAAATATGCCTGTTTACGAAAAAGAGGCAGTTCTCCGCCGTATAACAACAGCGATGAGCCAATATATGGTTCAAATAAGGGCTAATCGGTTGGTGAACAGCCAGCTAGCGGAGTTTGTGACTCGTGGAGGTGTCAAGGGGAATTTCTTTTGGGTGTCGCCCAATGAAGTGGATAAATTTTACGACATGCAGACTGGTTTCAAGGACGAAGGTGGAGAGGCGTATTTATATTAGGGGAGAAGGTAATGATTTAAAAGTTGTCTTATTGTTGTCGACCTCCAATCGCGCAAAAACCTCGGGGGATCGACGACAATGTTTTTTTGTGCCGAAATCCTACAGCCATCACGGCTGAGGCTGTATTGACAGAATTTTTGAAACGTGATATTCTAGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTGGG # Right flank : TACAATATAAGCAACGTACAACTCACATTTCGCACCCTAACAGGGCTGAGAGAATTTTTTATTTCGTTTTTTAGAATAACGTTTCGACCAACAAGACTGGCGATGAAAATCCTTTTTTTACCACCACGGATTGTTCCGTATGACGTTACACGTAAATACTCTCATCCATGCCCCCCTGCAAAATCTTCGCTGATCAGAGGCGAGCGGTTTCCCGAACGCGCGTTGGATTTGTCCATCTGGCAGCTCCAATAGAACGACTTTCACATACCAGAACAACTGAAAAATCGCTTGCTCGGTCGGTTGAGTCAGCTTCCGGCCTCCTGCGCCCTTTAGTGGGCGTTCGGGTGTGATGATCGGACGCCAATCGCACGAATTCGAACGTCCATGATGGGAAAACTCCTTTGCGTTCCTTGTGTTGCAAGGTTTATTCGACATGGAGATCAACAATTCTTCGATTTTGGTCGAGAGGGTGCGAAATGTAAGATCTACAGTAAGTGAAA # Questionable array : NO Score: 8.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 182857-181439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000001.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 182856 30 100.0 35 .............................. CCTGCAAATGTTCGCGTTTCCTTTTATCGATCCTC 182791 30 100.0 35 .............................. CGATGTGCTGGATGCGTTTGAAAAGGCGGGTGCGC 182726 30 100.0 36 .............................. TCGCTGCAACCAACCGAATGGCACAAGCGACGATTC 182660 30 100.0 37 .............................. GGACTGTCGTTCGGTTTTTATCTTGTTTTGCTGCAAT 182593 30 100.0 35 .............................. TGGCTTTAATGTTGGTGTTGGTGTTGTTCACTACC 182528 30 100.0 39 .............................. ATGGGAAAGAAGTTCGTTTCAAGTCGAATGCGGCAACAC 182459 30 100.0 36 .............................. CTCTTCGATCGTGCGCAAACCTTGTGTGATAATGAC 182393 30 100.0 36 .............................. CAATGGGCTGACTGTGAATGGGGGCACGGCTAATGT 182327 30 100.0 37 .............................. ACCTATCTTTCTTTCCCGGTCGGTTCGGAACCCTGAC 182260 30 100.0 38 .............................. AATTCCTTGACGTTTCCCGTTGTCTTTTTCATACAAAC 182192 30 100.0 35 .............................. TATATAAGGTCCACATGTCGCGTCCCAGCCGCCGC 182127 30 100.0 34 .............................. TTCGGACCGGCTATGCTTGAATCCAAAGGCGTTT 182063 30 100.0 37 .............................. TGGCAATATGGTGCGATTCCAAAAGCTTGGGAAGACA 181996 30 100.0 35 .............................. CCAAATCTTCGTATTCTTCTGGCACTTCACACTTC 181931 30 100.0 34 .............................. TCGAGGAACACGACAGTATCAGCTCGGTCGAGTG 181867 30 100.0 37 .............................. TGGGGAACGGCTTTACAATCAATCTCGACGATAAGCC 181800 30 100.0 38 .............................. CTTGAAACGATTCTAACTGTTTGATGCGATATTCTTTC 181732 30 100.0 37 .............................. TCGAGCTGGCGATTCGTGCCGCAAAGCCGGGCGGTTA 181665 30 100.0 35 .............................. ATAGATGAAGCAGGGATTATGTTTAATTCTCGCGA 181600 30 100.0 35 .............................. TATGATTACTTTAAACATCGCAACCCAGAAGCATT 181535 30 100.0 38 .............................. GGTTGAACCGCTCTTTCTTCATGGTAGGTGTGTCTTTT 181467 29 90.0 0 ...................T.-.......G | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.5 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGTTCTTGCATGAAGCCACTCTCCTTTGGTATAGCTGGCCCCGCCTTCATTATGCAGATGACCCGCCAAGCAGACGATTTAGATGTCGTCTCAAGTTTGCCTAGCACCAAAGGAATGGAACAGGGATTATAGCAAGCAAGGCGGAAAGAAGTAAAACAGGGGAGGAAAAAGGTCGTCAAAAAAGAATCGAGGGAAGGACGCTCGACGTGGCGAAGAGAATGCTGGTGAAGGACTGGAATATCGACGCTATCAACGAACTGACCGGACTGCTGGTTGAAAAAACAAACGAGTGAAGAAGCAAACCATTCTCCTCAACCTTATATTCCCATTGTCGTCGACCCCCAATCGCGCAAAAACCCCTGGGGATCGACGACAGTGGTTTCGGGCTCCCTAAACCTACAGCCATCGATGACGAACCTTATTGACAGAATTTTTGAAATCTGTTATTCTGAAAGCAGCGCTAGATCGAAATGTTTGATACAACAAGCATTTTTGGGGGG # Right flank : TCCGTTGTACCCTTTGCGAAGATTGATGATGTATGGCGAAGCGGCATCTGTTGTCTATGACCGCAGAGGCGTGGTGTCGCGCTTGCTTGACCCATTGATAGCGAATCCATTTGATAGAAAAGGACAACGCTCGATCACGAGGCGTGTTTCTGGCCGCCATGCTTCCCCGTCTGGCTTTCGAAGCATCAAAACAAAAAAAGACCCGCCCGCTTGTCTTGGCAAACGGACAGGCCTTTTCGTCGCGTTTTTCGTTTCCTCTTGCTCGACGCCTTGTCGATTACGCTCTTGCCATGCCGATCGAGGCGTCTGGCGTTTTGTAGGATGAAGCGTCGTTGTTTTCGTCTTGATGGTTGTCGCTTGGCGTCGTCGAATGGTCGTCAGCCGATGGTTGTTCATTCGCTGGGTTTTCGTCTGTCGGCGCTGTTTCGTCACTTGGGATCAATTCTTTTTCTTTGCTCGTGGCGGCGCGATCGCTTCCCGTTTTGTCTTCCGCTTTGTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 253625-254461 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000001.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 253625 30 100.0 37 .............................. AAGAACAAAACGAATTGTATGCACAAGGTCGCACGAA 253692 30 100.0 37 .............................. TGGCAATAGGTTTTTCCGCCGACGACTCCCCATCCGT 253759 30 100.0 39 .............................. GTATTGTGTTTCGCTGCAATTTGTGACAACGTATCGCCT 253828 30 100.0 36 .............................. GACGGCATCTGAACCACCTCTCTTTGACTAAAAAAT 253894 30 100.0 39 .............................. GTAGGTGGAGGATGAGAGGATGCAGACTCCGGCTGTCCA 253963 30 100.0 35 .............................. TCAACCCCACAGTCTGTCTAAAAAGTCATCGGTCG 254028 30 100.0 35 .............................. TATTCTCTCGCTGTCTTGGCGATTGGCTGGCTTCC 254093 30 100.0 39 .............................. GCTACATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 254162 30 100.0 35 .............................. TATTCTCTCGCTGTCTTGGCGATTGGCTGGCTTCC 254227 30 100.0 39 .............................. GCTACATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 254296 30 100.0 39 .............................. GCTGCATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 254365 30 100.0 37 .............................. TATCCGCTCATTGATGACCCACATTCCGGACATTTGA 254432 30 93.3 0 ...............G....A......... | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.5 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATCACCCAGATTGTGATGGGGATGTCTGCTCGGACGAGATGGGAGGAAATATGGAAAGGATCGCTCATTAATGTAATTATGCAGCAACTTAAACATGTTGATGTGCTTGTTGTATCTGACAGATAGAGAAGAGGGGCATCTTTGATCATAGTTCCAAAAGAAGACTCCCGTTCGCAATTCAAGCAATAAGCGGAAGATGAATGTCGGCTGGCGCCAGCCAAAACGTATGATAAAATCAATGTGCATTGCGTACAGGCTGTTGACGGACTTAAGCGGCTAAGCAGCGCACGAGACGAGAGGAAATTCAAAGTGCACGCTGTGCATAGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATCTTTTTACACACTTCAAGCCTACAGCCATCGTACATGAACACGATTGACAGAATTTTTGGATTATGGTATTCTGAAAATAACTTTGGAGCAAAAAGATTGATATATCAAGTGCTTTCTGGG # Right flank : CCTTCGTGTTTTGTGCGAACGATCGTCGCAATAAACGCTTTTCATCACACCGTAAGCAACTCCATGGAGCGCACATAGGTTTAAATCTGTGCGGTGGAGAGAGGTTAAGAGTTGGCGAAGATGACTGAAAGAGATGAATCAGCATTCGCGGGCTATGTCTGTGCGATACCGGCGATCCGCTTCTGCCGTTTGTTTTAGGCAGGAGTTTTTTATTGTTATACAGCCGCTTTATGTCCATCCCGAATTGTCGTTCCAGGAAGAGAAAACGGCGCAATTTGTGTACGAGACGCTGCAATCATTCGGCCATCTTGAGTTGTCGCGGCCGACGAAAACGAGCGTCATGGCGCGGCTCATTGGCCAACAGCCAGGCCGGGTCGTCGCCATTCGCGCTGATATGGACGCATTGCCGATTCAAGAGGAAAACACGTTTGAGTTTGCCTCAACTCAAGATGAGGGATGAGAGTCCGAAAGCGCTTACGATATCAATTCCTGAAAATGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1121218-1125922 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000001.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1121218 37 100.0 37 ..................................... TATATCACACAGCTTCTTAGTATCATCGACAACACGT 1121292 37 100.0 34 ..................................... CAAAAGACCAAAACGGGACACCGGATACAGGTGA 1121363 37 100.0 34 ..................................... AAAAAGAGATCGAGCGCACAAAAAAGGGCCGCAA 1121434 37 100.0 36 ..................................... TTTGAGCGTTTTGCCTTTATGCTTCCCGAACGTCAA 1121507 37 100.0 33 ..................................... TAGTAACACCCCGGCACTACATACAGAGGACAA 1121577 37 100.0 34 ..................................... ATAGGAACCTCGCGAAAAATCAGCAACCGTTCGC 1121648 37 100.0 35 ..................................... TTCTTTCAATGCGTGTTGCGAAATGGTGGGCGACG 1121720 37 100.0 35 ..................................... TCATGGTGGGGGAGCTCCCCCACACCCCCCGTCGC 1121792 37 100.0 34 ..................................... TCGACAACTCTCCATGCACGCTCTAACGTCTTAA 1121863 37 100.0 36 ..................................... TAAACTTCCTGCTGACTTTATGTCTGCCGCTGTAAC 1121936 37 100.0 35 ..................................... AGTTTCCGCAGTGGAATTTGGATCAACCCAATCGC 1122008 37 100.0 38 ..................................... ACAATTGCGCCGATGGATTTGCCTAAAAACCTGTCAAC 1122083 37 100.0 36 ..................................... AGATGCTACTAGGCGTGACAAGTGAGTACGAGGTCA 1122156 37 100.0 35 ..................................... AGAGCGAATGAAATCTTGCATGTCCTCGATGTCCT 1122228 37 100.0 35 ..................................... ATATCATCGTAAGCGACAGGTGAAACGCCTTGAAT 1122300 37 100.0 40 ..................................... CGTGAGCACGGCCGGCATCTTCGTCTCGCGCAGTACAGCA 1122377 37 100.0 34 ..................................... TCTTAAGTTTAATGTTTGCCCTGATGGACATGAG 1122448 37 100.0 34 ..................................... CTTTCAACACCTCAACTGCCTGTGTCAGCCGATC 1122519 37 100.0 34 ..................................... ACGACGAGCATTGAAGCAGTCAATCGTAAATTAC 1122590 37 100.0 35 ..................................... ACGACGAGCATTGAAGCAGTCAATCGTAAATTACG 1122662 37 100.0 35 ..................................... ACGACGAGCATTGAAGCAGTCAATCGTAAATTACG 1122734 37 100.0 34 ..................................... ATGGATAGAACGGAAATACCGTCGGACTACGTAG 1122805 37 100.0 35 ..................................... ACGACGATTAAGGTCGGAGCAACAAACATCGACGC 1122877 37 100.0 34 ..................................... ATCTTTTACCTTTTCCAACTGAATGTGCGTTCCT 1122948 37 100.0 35 ..................................... AAAAGAAAATCCATCACTCATCAACCACCCTTCGC 1123020 37 100.0 36 ..................................... TTCCAGGCTTTGCTTCATCTTGACCGCCAGTAATGC 1123093 37 100.0 33 ..................................... CGAATTACGTCGCTGGGGGCTTCCGTGGCGCCA 1123163 37 100.0 36 ..................................... ATGAAATCAACTCCTTCAACTGCAAGCGCGAATTTC 1123236 37 100.0 36 ..................................... TCATAAAAAACAACATTTAAGCGAGATTCCGGCGAA 1123309 37 100.0 34 ..................................... AGTCAAAAAATTTTTTAGCGCCTTTGGCGCGGCG 1123380 37 100.0 35 ..................................... TAGCATCCACCGTGTTTATATGCTCCACAATCCGC 1123452 37 100.0 35 ..................................... GTGAATCGGGAAGCGTGGAGCAAGACGCGGATCTC 1123524 37 100.0 38 ..................................... TTGTTGTTGCTCCCGTAAATCAGCGATAGTAGGAGGAA 1123599 37 100.0 36 ..................................... AGATTAACGGAATGCAAGAACTGTTACGTCAGCTTG 1123672 37 100.0 35 ..................................... TGATTTAGGTGTAGCGTAAATTTCATGCCCCAGCT 1123744 37 100.0 33 ..................................... TCCAGAATGGCAACGAATGAGGGAGTACATCTA 1123814 37 100.0 34 ..................................... AATCTGAGTAGATATGAGCATCAGTTAGTCGCTG 1123885 37 100.0 34 ..................................... TACAAATTGGCGTTTATTTTGAGGATAGAGGTTT 1123956 37 100.0 35 ..................................... AACCATTTTCGGTACAGAAGCCGCAAGCGGCATGC 1124028 37 100.0 36 ..................................... ACGGCTCATTTCGCTTGTATTTGCAAAAACAACAGC 1124101 37 100.0 33 ..................................... ATTCTTTGAAAGACTTTCGAGTAACAAAATCGC 1124171 37 100.0 33 ..................................... AAAAATGCCAGCTGGCAAGCGAAAACCACGCAT 1124241 37 100.0 33 ..................................... TGTTCCTCTTGCGTCGGCTGGGATGCGTCTGCA 1124311 37 100.0 33 ..................................... AAAAATGCCAGCTGGCAAGCGAAAACCACGCAT 1124381 37 100.0 36 ..................................... CGGGTCTGGGTTCACAATAAAGTGCAGCACCTCGTC 1124454 37 100.0 33 ..................................... ATTTCCCTCCTTGTTTTTCTTCGAGGCTTCAAG 1124524 37 100.0 36 ..................................... GCGAACTCAATAGCGTTGATTTAACGGATTTCCAAC 1124597 37 100.0 39 ..................................... CGCAAAACACCATTTTCGACCCGATTGCCAAGCGAGTGG 1124673 37 100.0 35 ..................................... GATTAAGAACTTTTTAAACTCGGGGCGAACCAGTA 1124745 37 100.0 33 ..................................... GTACAATCGCCGAGCAAAACGAATTATACGCGC 1124815 37 100.0 34 ..................................... CTGTCGCGGCCCCTAGTTCCTCAAGGGAGATGCG 1124886 37 100.0 35 ..................................... ATTTTTTGGAGGCCGTTTATTGTATTTTTGCGAAA 1124958 37 100.0 35 ..................................... ACACCTTCTTTCAGACTGTAATATAGGCGCATAAC 1125030 37 100.0 35 ..................................... AAAACATCCCAAACCGTTTTATCATATAAGTTGAT 1125102 37 100.0 33 ..................................... CTCCTAATCGCCCCACGCACTCGCTTGTACGTG 1125172 37 100.0 34 ..................................... TTTGCATGCACCCACATATACTCATCGCCGCGCC 1125243 37 100.0 34 ..................................... GAGCGCGTGTGCTGGCGATCCCGAGCAAAATATC 1125314 37 100.0 33 ..................................... GACCTCAACGGAAATGTATGGGAATGGGTGGAC 1125384 37 100.0 34 ..................................... AGGTTCAGAGCAAACACACCAGCACTCGCGCCAT 1125455 37 100.0 36 ..................................... AGACGGCTTCCGGTGGCTGTAACACGTGCGGATCGC 1125528 37 100.0 33 ..................................... TTGACAACCTATAAGTCACCATTCGGCAGACCA 1125598 37 100.0 36 ..................................... ACAAAAAAGAGCGCATGTTCATGAATTTCAGCTTGT 1125671 37 100.0 35 ..................................... CAGATGACATTATCACTCAATATCAAAACACCGAT 1125743 37 100.0 36 ..................................... AACTTTTTGCTATCTTAACAACAGACGGGCAAACAA 1125816 37 100.0 33 ..................................... GTTTCGCCCGGCTCGATCACGACGTCCTCGACC 1125886 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 66 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : CGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGCCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTCAGTCAAGCGCAACTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAATAGGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGATGGGAAATGGATCAGTGATCATTGCAACTTTGATCCAAACGGAATGTGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : CCTATGCAGGATCCTAACTTTAATTTAAAAACTGTAGATGAGCATTTTTAATTACAATAATTTCCATGTTCTAAGAGACAAACAGGATACCCCTTAGGCCACATGGAGCTGTTTTTTGATCACATCAATGGGAATATCTTGCTTCGCGGCGTCATAACAGTGATGGACATCGGTCAACGTTCCCGAAAATCCCTTGGTGGTCAAGGCATCGACAATGTGAACGAGATGCTTCAAGACCGGTTTGGAAAGTTGCAGCGTCAACCCCAAAGTGAAGAAAAACTTGTAGATTCCTTGGTGATGTGCTAATCTATTCATGGGACATGAACCTCCTTGTGGGTAGTTGGTAGCACATCTATTCTAACCAAGGAGTCCGGTTCATGTCTCCTTTTTTGTTTGATTGTCAATTTATGTTAGCGAATTTGCTCATCTACAGTTAAAAATTTATTGTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAACAAGATGTGGAGGACGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 4 1126368-1126906 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000001.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1126368 37 100.0 34 ..................................... AAGATGTGGAGGACGATCAAGTTGATCTGGTGCA 1126439 37 100.0 34 ..................................... TCCGGCGTATTCGCAACTAACTCCGCAATTTTGC 1126510 37 100.0 34 ..................................... TCATTCGCCTTCGACGTTTCAACCCGCATTTCCC 1126581 37 100.0 35 ..................................... TGATATAAAAAACCTGATCGCAAAACGGGAAAAAC 1126653 37 100.0 34 ..................................... AAGTATGCGGCGCCGATCGCAAAAACTCTTGGTA 1126724 37 100.0 37 ..................................... ATAAGTATTGGAGAAATAGAGAAAATAGAATTAAAGA 1126798 37 100.0 35 ..................................... TTAACTTGGATGTGAATTTTACACGTTTGGATTTG 1126870 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 36 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : ATCACGACGTCCTCGACCGTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAACCTATGCAGGATCCTAACTTTAATTTAAAAACTGTAGATGAGCATTTTTAATTACAATAATTTCCATGTTCTAAGAGACAAACAGGATACCCCTTAGGCCACATGGAGCTGTTTTTTGATCACATCAATGGGAATATCTTGCTTCGCGGCGTCATAACAGTGATGGACATCGGTCAACGTTCCCGAAAATCCCTTGGTGGTCAAGGCATCGACAATGTGAACGAGATGCTTCAAGACCGGTTTGGAAAGTTGCAGCGTCAACCCCAAAGTGAAGAAAAACTTGTAGATTCCTTGGTGATGTGCTAATCTATTCATGGGACATGAACCTCCTTGTGGGTAGTTGGTAGCACATCTATTCTAACCAAGGAGTCCGGTTCATGTCTCCTTTTTTGTTTGATTGTCAATTTATGTTAGCGAATTTGCTCATCTACAGTTAAAAATTTATT # Right flank : CAAATTTGGTCAGGCCAAGCAGGAATTTGCTCCTTGCTGTCGAATTTATGTTCATGAAAATTGTTGCTTCACCTTTTCTACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCAAAGACGCCGTTGAGCCGCTGCTCGAGGACGGCGATTCCTTCTCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGTGTTGGCAATGTGTACACATTCCGCTTGAGCAGTTCCCCAAGACCGATGATCATATCGGTCGCCAGCATCGTCGCCTGTTCCTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGCTGCAGCAAATAGCTGAAAAACGCTGGACCGCAGCTTGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCGGCAGTCGGCCGAACTGCGTGCCCCGAAGGTGACGAGGATGCTGCCGGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 5 1561908-1564809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000001.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 1561908 28 100.0 37 ............................ TGACGATATTTTAGCTGAGATGCTCGGCTGGGAAGTC 1561973 28 100.0 40 ............................ TGCTATCGAAAAGCACCGAAAAAATGAGCAACGCCCAAAA 1562041 28 100.0 38 ............................ TTAAACACAACTATTGTCTATCCTACACAAACATGATC 1562107 28 100.0 35 ............................ TCATGTCTGTCTTGGAAGAAAACAGCGCTGCGTTC 1562170 28 100.0 40 ............................ TATGAAGAAACAAAAGAACTTATACAAGCAGGAAATTATA 1562238 28 100.0 40 ............................ TATGAAGAAACAAAAGAACTTATACAAGCAGGAAATTATA 1562306 28 100.0 37 ............................ TTTCAGCTTTTTGGAATGAGTTTAATTCGTTGAATGT 1562371 28 100.0 37 ............................ TGTCACTAGCGTAAACGGAAAAACAGGCGCTATCACA 1562436 28 100.0 39 ............................ TTTCTCATAACGATCGCAATATCGATTCCTTTTTCCTTC 1562503 28 100.0 36 ............................ TCCATCCTGACGACATCACAGAGGTTGTCGTCGATA 1562567 28 100.0 38 ............................ TCAAGATATAGTTTAGATGGGCGCCCGTACGAATTTTC 1562633 28 100.0 39 ............................ TCTTCAGATGGCGTTGGTGCAGTTGAATAGAAATGCAGA 1562700 28 100.0 36 ............................ TTGTATTGTGACGCCTATGCTAACTATGTTAAGTGC 1562764 28 100.0 37 ............................ TATCCAGAAGGGATTGAAAATATTCGCGCCAAGCTCA 1562829 28 100.0 37 ............................ TGACCGTTTCTTCAGCCAGCTTTTGAAGAAAACAAAG 1562894 28 100.0 36 ............................ TGGACGTCGCGAAATCGGGATCACTTCAGCAGTATT 1562958 28 100.0 37 ............................ TTTCTCCTTTGCGTCTCGATGGCACCGTTGTTCCTCC 1563023 28 100.0 38 ............................ TAGAAGGGCGAGCGTCCCTCGAGGATGATGCCGACAAG 1563089 28 100.0 37 ............................ TTGTAATACCACTCCTTCACAACAATGCTCGTAATTC 1563154 28 100.0 36 ............................ TATTAAGCTGCTTATAGGTACATTTAGCGCAGATGC 1563218 28 100.0 39 ............................ TATTCATAAAGTCGGTTTGTAACTATTACGAAGAGAAAA 1563285 28 100.0 38 ............................ TTTCGCAAAGCTCTATGACTTTCTCTAGCTTCTCGTTT 1563351 28 100.0 38 ............................ TTGACAAACGCGTGAACGTTCTTTCTCTTCTCCTCTAA 1563417 28 100.0 38 ............................ TGATGAAACCGCCAAAAACGTTTTTAAAGGACACTTTT 1563483 28 100.0 39 ............................ TTGAACTAGACCGGCTTTCATAATCGAAAGGCAGTCATT 1563550 28 100.0 36 ............................ CATGGGACATCGTACATATGACACATTATCCGATCT 1563614 28 100.0 39 ............................ CAGTTCATTCGCTATGAAACAAAGACTTTTAACATGCGC 1563681 28 100.0 36 ............................ CACAATTTGATTGCCTTGTACAATAACACCTTTAGC 1563745 28 100.0 36 ............................ CAGCGACACGGCCAATGACATTTGAGGAGCATATGG 1563809 28 100.0 39 ............................ CGGACATGCAATACACGTTCAAGTATGCGGCGCCGATTG 1563876 28 100.0 36 ............................ CACATGATTCTCGCAAAACCGGGTTTGGTGGGAATA 1563940 28 100.0 36 ............................ CAGACTTCGCACGCTCTACCGTTGCATCCGGCGCGA 1564004 28 100.0 36 ............................ CTGGGTTGCCTCTCGCTATGACACAATGAGGATCTT 1564068 28 100.0 38 ............................ CTTGTTACGAAACGAGGTATTCCGTATTTTTGCGACTA 1564134 28 100.0 37 ............................ CTGGTCGCGATCAACTAAACGATAACCGGGCGGAATC 1564199 28 100.0 39 ............................ CTGCTCTCTAAATGGGGTATCCTCTCGATCGAAATGCAA 1564266 28 100.0 36 ............................ CAGGCTGTTGCGGTCAAGAACAGATGGCCGGGAGTA 1564330 28 100.0 37 ............................ CATAAAAACTAACTCTCTTTCAGTTCTTAACATTTAC 1564395 28 100.0 37 ............................ CAAAGAAGCACATCATCTAACGTAATGACACGATTGG 1564460 28 100.0 37 ............................ CAATGCTCATATGGCTATTCTAGCGTACACCGGATCA 1564525 28 100.0 36 ............................ CACAGATAGTGATGCGAATGAATTCGCGAAAGCAAA 1564589 28 100.0 37 ............................ CTCGAATGGGTTACGAGGGATTTTTTCGAGTTTTACC 1564654 28 100.0 36 ............................ CTCATGCATCCAATCCCGAGAATTAAACATAATACC 1564718 28 100.0 36 ............................ CAGTCCTCCCAACTTGCGTTCATATCGATTTCTTGC 1564782 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 45 28 100.0 37 GTTTAATCTGAACGGAGAGGGATTTAAA # Left flank : CGACCGACCGTTATTCTGCGAGCCCGAGTAAAAAAATTAGCGCCATTGCCTATCGGTTGTTAAACGCAGCGAAAGCGGGGGATCGGAAAAGCTTCTTGGATACGTTGTTCCGGCTTCATATGTCAGCGGATCAGCCCATTTCTCCGCTTTTCTTAAATGCGCTGCATGAGCGGGATTTGGATTTCCCCGCTGTAGCCAACGCCTTTATTGCTGGGTTGCTGTCTCAAGAAGGACAAGGAGAACAAGAGGAGCATTCCCGTTAGGAGCTTTTCCGGGGACTTGATCAAAAAAAGCCCTCTTGGTATGATGCAGGGGTGTCAAACAACACCTACCATCATGCCAAGGAGGACTTCAGATGAATTGTACACAAAACCTCATAAGGAATGATGAGCGATGGTAAAAAAAGGATTGCCATCGCTTGTTGTGTTGGCTCAAAAAATATTTTAAAAAAATGAATAAAAAATCCTTTGTTTCTGCACTGCTGGGGTGCGAAATGTGAG # Right flank : ATCATATACTGTAGATGAGCAAATTCGCTAACATAAATTGACAATCAAACAAAAAAGGAGACATGAACCGGACTCCTTGGTTAGAATAGATGTGCTACCAACTACCCACAAGGAGGTTCATGTCCCATGAATAGATTAGCACATCACCAAGGAATCGACAAGTTTTTCTTCACTTTGGGGTTGACGCTGCAACTTTCCAAACCGGTCTTGAAGCATCTCGTTCACATTGTCGATGCCTTGACCACCAAGGGATTTTCGGGAACGTTGACCGATGTCCATCACTGCAAAACCACAAGTATCCGGCATGCATGGGGAGGATCTCATACAACTCCCGCTCGGAGTGATCAAACAAATACGAGAGCAGCATCAGGCGAAGCAGCCGTTCCGGATCCGCCGCCGGGCGACCCGTTTTTTTCCGTGTACAGGGGAGCCACCCAATCGTGAATGACGGAAACGTCAACCGTTTCGTTGATTTGGCGCAAGATATGATGTGGGGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTGAACGGAGAGGGATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 6 1572069-1573404 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000001.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1572069 29 100.0 39 ............................. TACTGCTTCAGTTGTCACTGAATCGCGTTTTACCAGTCG 1572137 29 100.0 34 ............................. GCAAACAGGTTGATGTTGATTTTTGGCAGCGCAC 1572200 29 100.0 35 ............................. ATCGACCACCACACCCACTATTGACCGCCCCCTAA 1572264 29 100.0 38 ............................. GGATACCGTCTTGAGGCTTTATCTCGTGGTGTCACTTA 1572331 29 100.0 35 ............................. GGCGGTGAGCCGTTGAACAATCCTGATGATTTGTT 1572395 29 100.0 35 ............................. TGGAAATAAAGTATTTTGACACTGATGCCTTTTTC 1572459 29 100.0 36 ............................. AGGTTGCCGCGAGTTTGAGCAGTACACGAAAAAGGA 1572524 29 100.0 37 ............................. GATATGCAAGACGTATCAGCAACCCAACAATATCAGC 1572590 29 100.0 36 ............................. CAAGTTCGGTTTCGACTTTATTTTTGTCGCTCAGTC 1572655 29 100.0 38 ............................. TGTCATCATTGACGAGGCTGGCATCATGTTTAATAGTC 1572722 29 100.0 36 ............................. AGCGATGAGCGATCACAAAGATGCCGGCTGGATCAA 1572787 29 100.0 36 ............................. ATTCAACCCCAACTCAAGCGCATGATACGACTTACC 1572852 29 100.0 39 ............................. GATAGTCCGTTTCAGACACAAGATTTCAATGAGACTCTT 1572920 29 100.0 37 ............................. ACATCTTTCCGCCTCTCCCGTGAGACACTTGATATGT 1572986 29 100.0 35 ............................. CAGCCGCCTGTGCGCGGAGCTGGGCGATTTTGTTG 1573050 29 100.0 37 ............................. ATTTTTTTTCCAGTTCACTTAGGGGGGATGCATCTTG 1573116 29 100.0 38 ............................. GTGTAAACTTAAGCGGAACAGTCATGCCGGCAATATGA 1573183 29 100.0 36 ............................. TTTTTTGAATTGTAATAAATTCAACGTATATGCTGT 1573248 29 100.0 34 ............................. GAAACAATCCTAACGACAGGCGCCGCAAAAGCAG 1573311 29 100.0 36 ............................. TCAGTATTATGTGTTTGAGGAGCAGTTCGCCGAAAG 1573376 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 100.0 36 GTTTAATCTGAACGGAGAGGGATTTAAAT # Left flank : GGATGAACGATATAAACCGTTGAAAGCGTGGTGGTGAACCATGTTTGTTATCATTACGTATGACGTAGCGGAGAAGCGGGTCAACAAAGTTTGCAAAAAATTAAAGGAATATCTCACTTGGACGCAAAATAGCGTATTTGAAGGGGAGATTTCGAAAAGTCTGCTGATGAAGTGCATGTATGAATTAGAGATGATCATCGATAAACAAGAAGACTCCATTTACTTATACGAAGTAGAAAACCCGAAGAATATAAAAAAGCGGGTATTTGGTCAGGAAAAGAATTTTGATGAGTTGTTCCTCTAAGCTTTAAGAATTTGCAGTGAACCGCATTTTAGAGGATGAATGGGAGAAATCTTGATTTATCAAGGGCAGTGCTTCATTATTTGCGTAACATTAAAAACACGATTATCACTTTACTGCAAAATACGGTATAATTGATGCGTAGGCATTAGCGTGAATTGCTTGCTACATCAATAAATATTATTTTGTAACTGATAGG # Right flank : TTGAAAGTCGATGTTGCTGAATTGGAGAAAAAATTGGCGTTTAACTCACATTTCGCACCCTCCCGACGAAAATCGGGAGGATTTTTTCATCCCGATGTCGAATAGGTCCTTGGTACACAAGGAAAGCAAAGGAGTTTCCACACCATGGACGTTCGAATTCATGCTATTTATTTTTATGATCAAAGAGATGTATGAAAGGGGAATGAGTATTTCCGATATTGCGAGGGAATTGGGGATCGATCGGAAAACCGTCCGAAAATATATTCACTCCCCCAATCCTCCTTCCAAATCCAAGCGAAAACCAAGAAAAAGCAAGTTAGATCCATTTAAGCCGTATCTTCAAAAACGGATGTTAGAAGATGGGGTGTTTAATAGCGAAAAGTTGTTTTTTGAAATTCGACAACAGGGCTATACGGGAGGAAAGACGATTTTAAAAGACTATATGAAACCTTTCCGAGAGACGGCGAAAAAGAAATACACCGTTCGTTATGAAACGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTGAACGGAGAGGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 1576954-1577177 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEWK01000001.1 Geobacillus thermocatenulatus strain BGSC 93A1 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1576954 28 100.0 38 ............................ TTGATCAAGTGTTTTATATCATTGATCGGGCGGTGATG 1577020 28 100.0 37 ............................ TTGCTGTCGCGGCTTGTGTCGTACTAGTGCTTGTAAC 1577085 28 100.0 37 ............................ GGGCGCTCAATGTGTTCCGTATGGAGCTGTTGGGAGC 1577150 28 89.3 0 ....G...................AC.. | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 97.3 38 GTTTAATCTGAACGGAGAGGGATTTAAA # Left flank : CCGGTGTTTCCGAGGGATCCACTTCGAAGTACGACGAAGTCGTATCAAAGTAAATCAAATCGACTTCCAGGTTCAATAAATCGGCCACGGCATGGAACACTTGGCGTTCCAATTCCGGCTGCACAGCCAACAGCTCATCCATCGCCCGGTATAACTGGTGGCTGGCGACTTGGGGAAGATGAGGGATATGCACGTCTTTCTCCACCCAATCCTCCATCGCCAACTTGCTTGACGGATGAAGGGCACGATTCGCCACCATGGCAAAAATGAGCCGTTCCAACGGAATCTGATGATGTCGGGAGGCAAACAAGGAGTGGAGAATCTCTCCCAATCCCAGTTGTCTCCAGAGCTGATCCAAAAGCCAAGCGCCTCGACTGCGGAACGCTCTCTCCGCGATCCAGCCGTCCTCTTCCCCCGGTCTAGAACCTTAAGTCTTGAGCTGGCAAGCCTATGTATTTTTTCTTGCACTTCTCTGCATTTTTTGCTTGCAAAAAACATAC # Right flank : AGGCCGCTTGTTTGCAGCGGCCTTAGTTGAGCACTCCAATGAGCGCATCCTTGGTATCACAGTGAGGCGCTAACTAATCGCCACTCCTGCACTCGCATATCCCGTGACGGAAGCGGCAATCGAAAGGCCGGAAGTGGTGGTGAAAAACGCCATGAGCAGCCGGTCGCCAGCATTGACAGGCACGTTTAATCCTGTGACGATGCCGCTGGCGTTTTGGGCTAGGGAGATGGGAAAGGTGATTGATGGCGTTAATGTAATGAGCGTGCCTGGAATAGGCGAAAATACGTTGCTGGACGGAGAAGTGGCGATATACAATTGGGCGCGGATCGTAGCCGTTCCTAAAAGCGCTGTGCCCGCTGTGGCGGAAAAATTCGCTGCGATAGCAGTAATGATCCCTGAACGCGGGATGGTAAAGGAAAAATTCGATATCCCGCCAAGGTTTATGGTTCCTCCCACTAAACTGATGCTTGAAGCAGCATTTCCAAATCCGATCAAACTTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTGAACGGAGAGGGATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //