Array 1 40747-39376 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYFF01000012.1 Escherichia coli strain 302302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40746 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 40685 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 40624 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 40563 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 40502 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 40441 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 40379 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 40318 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 40257 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 40196 29 96.6 32 .............T............... ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 40135 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40074 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40013 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 39952 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39891 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39830 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39769 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39708 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39647 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39587 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39526 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39465 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39404 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56887-56248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYFF01000012.1 Escherichia coli strain 302302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56886 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 56825 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 56764 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 56703 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 56642 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 56581 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 56520 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 56459 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 56398 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 56337 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 56276 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //