Array 1 29226-29427 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAXB01000019.1 Geomicrobium sp. JCM 19039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================== ================== 29226 28 100.0 30 ............................ GTAAAGAAAACACGGTGGGCGTCTTTTGGC 29284 28 100.0 30 ............................ ACATAGAAAACACAGTGGCTGTCTTGAAGA 29342 28 85.7 30 ............G...G..G......C. GCATAGCAAACACGGTGGCTGTACATTAGA 29400 28 92.9 0 ...................G......C. | ========== ====== ====== ====== ============================ ============================== ================== 4 28 94.7 30 CACCGATGTTGCACTTATACTCTGGAGT # Left flank : TCTGCGTCAATTCTGCGCTCGAGTTCCTGACTTCTACGCGCATGTTTGCCCTGCGCGGGTTCAAACCTGTGCAATTCTCATAAACTTGCGCGCAGTTTCACAGAAAAGGGCAACACATATACCGCTCTCAGCAATAGTCACGCAGAAATCAAATTGGCACGCCGGGTGCGGGCAAAAAGAAATGAACGGTGGTCACCTCCTGGCATAAGGACCGTTACGACCTCCCACTTTTTATGTGACAATCCAGCCCTCAAACCGGGCACTTTCGGCACTCAACGGTCACATATATCGCGATTTGTGGCCGTTGACTCCGTTTATGTGCGCATTCACGTTTAAAATCATGATTTTCTTTCCCAAGTGTCACATTAATGAATATATGGGGCATTTGGACTTCTTTCCATACATCTTGGGCATTAGTCAGAAACGCAAACCGATGTCGAGGATGGAAGTGCGCCCTCAGACTCCGAACTGTAAAGAAAACACGGTGGGCGTCTTTTGAC # Right flank : TACAACCTTCAACCCGTGGTGTAGAGCAAGAACCAACAGTGCAAATTAGGAAGATCTAAAGTTCAATCTATATTACAACCACCCCTCTCTTTCCAAACAAAATCAAACAGCACCAATGCTAACGAGAGGTCGGCATGAGTCATGCCGACGACCGTTCGGTTTATCTTCGGCACCTCCGGTGCCGATGGTTGCTAGCTCTTGAGGTTTATATGTATAAACAGGTTGAGGTTCTGTATAAACACGAGCGTTCAAAAATCGCCCAGTATAAGGGAAATTGCGGTGTTCTAAAGCGATCTAGAAAGTTGAACGAAAGAATTTCTTCAAGAACCAATGGTAAGCTTTGGGAAAGTGGCAACTGTGCTCGAGTTGCGCCCGAACTGTTCTCAAGTTGGGGGAAATCGAAGGAAAAGCGGTCTATTCTCATAAACTAGGGAACAGAATGAGCAAACTCGGGAACAGATTACCGGGTCACCTGTACAATCCCCGCGCCGAACCGAGTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCGATGTTGCACTTATACTCTGGAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 58746-58980 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAXB01000014.1 Geomicrobium sp. JCM 19039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 58746 33 97.0 32 ................................T GCTTCAACTAAACTAGGTGTATCCACATTGAA 58811 33 97.0 33 ................................C AATCAGAGATGGCAGGTTTCAATGTTTCTGGTA 58877 33 100.0 38 ................................. ATGCTCCAGCCGAGCCGATGGCGTACAGTTTAGCCATC 58948 33 93.9 0 .......T......................G.. | ========== ====== ====== ====== ================================= ====================================== ================== 4 33 97.0 35 GTCGCACCCCGCGTGGGTGCGTGGATTGAAATG # Left flank : CCGAGCCAAAACACTCGCTGACGCTTATTAGCACTTTGAGTTGGGAATTTTGGGCGTGGCATTCTTCGCTCTAGTTAAACATGTCTGCGCTCAAGTTTGCTCTTATTAATGATTTTTTTGCACTATTTCCTGGAAACTAGAGCGCAGAATCTAAGGGAAAGAGTGACAATGACACGTCGGCCCCGAAACGAAACCGATCCGGTGTGGGCAATTATGTGTCAATTTGCAAGTGGGTAAAAAGAAGAGGGCTGTAAATGGTGAAAGGGTATTGATTGCAAGTTAATTGAAGAAATCATATACAAAAGCATGTATAAATCTAGTGAAAATTACAGTGCGGACCCTAAGTGAACATAAAATCCCTAGCGGACCCGCACCAAATTTTCGATCAATTGTGATAAACTATGTAATAGAGAGTGGAATTGTCTTGGTCATAATAACAACAGAAGATTGAATATACAGACAATATAACGATTATAGTATAATTATAAGCTATAATCGCA # Right flank : GATGAGCAGCAGTGGGGAGATTTTGCGCTTGCTCTAGCCGGAGAAGTATTTGGCAAGTAAGAAATGCATATAACAACAACTAAAATGTAACCACGTGCCAATGATTTTTGTTGATGAATTATGGACGCTTTCTATTAGAGTCTTTCCCCATTAAAGGCAACTTAATGAGAGTGATAAATCATTCAATCGATCACTGCTTCCGTGAGAAACAAATCGCCAAATGTCCAATCACTTGTAAAGCTGACGCTCGTTTTCTAAAAATACAAGGAAATGATTTGAAGCAATTACTCCGCCCATTGCTTGTACATAGTGATAAATCCTAACTAGCTCTTAAGTAAGTAAATCCAGGCCTCAATATGTCCTACTCAACTCACGATAAAAGTAGCTTTTTTATCGTAACTATTAGCCACACTAAACAAAAAACAGCCCCTCTTCAGGAGCTGTCTTCCCTACATATAATGAATCTGATCTCTATATTTCTTCATCATCGATGCGTTGTA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGTGGGTGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 64777-65009 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAXB01000014.1 Geomicrobium sp. JCM 19039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 64777 31 100.0 39 ............................... ACAGTCACTAATTCGACACTGCAAAGATAGGCGAGGTCG 64847 31 100.0 35 ............................... ATCAGAAAGCGCGATAATGGCGATCTCTCTGAGTG 64913 31 100.0 35 ............................... GCTACGTTCCACTTATCTGTTTCCTCATTAAAATG 64979 31 90.3 0 ..........C.............A..T... | ========== ====== ====== ====== =============================== ======================================= ================== 4 31 97.6 37 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : ATGTACCACTTTGTACAGACGTGTATACCATATGGGAGAGAGGGCCTTCAAAAAATGTTACACCAAAAGGATTAATCAGGTATTCTAGGTACTTCATGTTAAAGAGCAAGTCATGAAAAACTGTAACTGATAAAATCAGAGTAGCCAATTCGTGGTTGATATGATTAACACTTTTCGTCACAAAAGGACGACAACTCATTATAATAAAAAGAAAAAGACCATGGTTGGTGGTGGGTTTGTCACATGTGTAACGAATCGAGAGAGTACTAATGTAATTGAATTAATGATAAATCATATACAAAAACATGTATAATGATAGTGAAAATTACAGTGCGAACCCTAAGCGAACATAAAATCCCTAGCTGACCCGCACCAACTTTTCGACCAATTGTGATAAACTATGTAATAGATAGAGGGATTGTCTTGTGCAAAATAACACAAGAAGAGTGAATATGCAGACAATATAATGGTTATAGTATAATTATAAGCTATAATCGCAG # Right flank : TACGTTTCCCCTTTGGTTGTGGGGGTGGCGTCGCATCCTGAATCGACTGAAATAAAACACCAGCAACAATGGCTCTCACCAACAACAAGCCCTGGATCCGTAAGACGGATCCAGGGCTTTGCTCATTCTGCTACAAGGAACTCTCCACACTCGGTGGCTCACTTGTTATGCATTATTCAATAGCTATTTCCTACAGCCTATTCAACTCTTCCATCATTGCCGGGCGGTTTTTGTATTGCTGTTGCCACTTTGTTTTGAGGTCGGCGACACGTTTTTCTCCGTCGGGGTAGGTTTGCATTTTTCTTAGAAGCTTGACGATCTGTTGATAGTTCTTTCGGTTGGCGGTTTCGACGGCCATTGCTTGAACGATTGATTCGTATCTTTCTAGCAGTGCTTCGGGATATTTGTCTTTTAGAACACGTTCATACTCTAGCAGCATGATCGATGAGGATGATTGGACGAATGCTAGTAGCCGGTCGTATAGCTGTTCCGCGTGGTAA # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12637-12404 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAXB01000008.1 Geomicrobium sp. JCM 19039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 12636 32 100.0 35 ................................ ATTTCGCAATATACGAACCTTCGTACGTACGTACC 12569 32 100.0 34 ................................ GGTCAAAGAGCAAAAAGAAGAGACGATTAACCTG 12503 32 90.6 36 ........T....CA................. TTCAGCGGTTTGCTGGTAGTGAGCAAAGACATCGTT 12435 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.9 35 GTCGCACCCTGTATGGGTGCGTGGATTGAAAT # Left flank : CCAATAAAAAAAAAGACCCTTTTCGTCTGAAAAAAGTCTTGAATGGCAATGTGCACAATTTCGCGACTTATCTTTCAGAATTGTTGCATTCTGCTGGACTTGGCACCTTCCTCATTGGAGGTTGCCGGACGTCATCGGGCCATTCCCTCGGTCACTCTCGATAAGCAAAATATGAAGTTAGTAGTAGTTATCGTAATACTTTAAAGCGATAATGTCAACAAAAATACTAACTTTTCTGATCGGAATTGAAGTATGATTTTTATTGCAGGAAGCGGATGAACGATGTCGAATCATCTTACATAAGCTTCCTCAAATTGGCTATGCACATCCGGTGCGAACCCGAAGCGAACATAAAAACCCTGGGTGACCCGCACCAAAAATCGGGTCAATTTTGTGAAAGTATGTAATGATTGCTAGTTTATACCCCATTAATGTGCGAAATAAGTAGTTGTTAGAAGAAAGAATAAGCGGATATTGGTCAAAAGACCCTTAATTTCGCA # Right flank : ATATAGAAGGATGGGGTTTTTATCCCTAGTAGTCCTGACGGCTCTCGCTCGTTGGGAAAACATAACAAGGCCGCCACTTCAATATAGTGGCGGCCTTGTTGCATGTTTGTTTAATTGTCGGGCGTGTATCCGTACACTGGCAGTGTGATGCTTGCGGTTTCTTCAATTTCTTCAAAGCTGATGTCAAATGTGACGTGTTCAGTGTCTCCTGTTTCGTGAACAATCAATCCATCTTCTAAGTCGTATTCGGCACTTTCTGGATGACTTGAAGTGACTTCTTTAATCGTTATGGATTCGAATACCTCAGTCGGTACGGATTCATAGAAGTAGTTTTGACCTCTGAACACCAATTGTGCACCGGTATGGTCCAGTCGTACAAATCTTGACATGAAGTTGCCATCGAGTTCGAATAACGGACTGATGTGGACAGGAACGTTCGGGTCAATGACGAGCACTTCTTGCGAATCGGACGTTATTTCTGTACCTTCTTCATCACGAAT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 77353-77515 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAXB01000005.1 Geomicrobium sp. JCM 19039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 77353 31 100.0 36 ............................... TCCGAGTCCCAGCTTGATGTGGGTTAGTTCCAAAGG 77420 31 100.0 34 ............................... TACGATACTTTGCGCAACAGACTTCGTATTCTTG 77485 31 96.8 0 ...........................G... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 98.9 36 TCGCACTCCGTGTGAGTGCGTGGATTGAAAT # Left flank : GCGAAAGTGCACCGTTCTCTACAAATCAAAGCGAAGACCGACACACCAACGGCTTTCGATGAAGACAATTATGCTGTTGAGTTACATGAATTGGAAGGGCTCACTCCAGAAGTGTTACATGGACAATAATATTGAAGAGTATTTAATGCTATCCGGCTTGCAACATTTTCAGTTTTGCAAGCGGCAATGGGTGCTCATTCAGATTGAACAACAAATGTAGATGAGGATAGCTTGCGAATCTATCGCTTAGGTAAAAACTATAAATCAAAAGTAGAACACATCGGAGCAAAACCATCAATTAATATTGAAGAACCGCTCATCTTTTAACTGGTGCGAACCCTAAGCGAACATAAAATCCCTAGGTGACCCGCACCAGTATTTCGGTCAATTGTGTGAAAGTGTGTGATTAGATTTGGTCTAATACGGGGATTTTGCTAATTTTCATAAGCAAAAACTTTAGGTTTAGGAGGAATTTGACTTTTTTACGGAAAATTCCGCCA # Right flank : TGAGCTGGAAACGCTGTTTGCTCATTGAGCAACTCAAAATGCTTTCGATCTTGAGACATAGGTCTTTTTGTTTTATTTTTAAAAATAATAAAAAATAAAAGGTGAACCATTGACATAGTTAACTAATAGGAATAGTATGATAAAAAAGAAAATCAGACGCGCTGACCGGACAACCGAAGGCCGACGTATAGAATGGGTTGACACTCTATACGTCTGGTCTTTTTTTCTTAAATCATACTATTTTCATTTGAATTATCAGTTATGTGAGGAGAGGATGTTTTATGAATCGGGGTTTTTACATTTCTGGTTTTGTAGTTTTATTTGTTCTTGCAGCGTGTGATGTGGGCGGAGTTGAGGGAGACCGGAGTGAGGAAGCCGTTCAAGGGGACGTCTCTGAAAACGGAGATTCTATTGAACTCTTAAATGTTTCCTACGATCCAACACGGGAATTTTATGATGATTATAATCAAGCGTTCGCAGACTATTGGTATGAGGAAACG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //