Array 1 18130-17247 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JNLZ01000081.1 Escherichia coli 3-105-05_S1_C1 e310505S1C1.contig.80_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     18129	    29	  96.6	    32	....C........................	TCGCTCCGGCGGGCTGACGCTCAACAAACCGT	
     18068	    29	 100.0	    32	.............................	CGTGACGCTGGTGGGCGTTTTGTTTTCCTGCT	
     18007	    29	 100.0	    32	.............................	CCCTGTATCGATGCGGAGCGGCAGCGCTGGGA	
     17946	    29	 100.0	    32	.............................	ATCGGTAACTACGGCACAAAACAGGAGCACAG	
     17885	    29	 100.0	    32	.............................	TTTTGTGATTCAGTAATCGTTTGAGTATGTAC	
     17824	    29	 100.0	    32	.............................	CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG	
     17763	    29	 100.0	    32	.............................	AGTGCCAGCGCCGCGCACGCCTGATCATATGT	
     17702	    29	 100.0	    32	.............................	GGGTTCTATTTCCTCGGGATTTGCCGACACGC	
     17641	    29	 100.0	    32	.............................	GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT	
     17580	    29	  96.6	    32	............................T	GTGTTTGCGGCATTAACGCTCACCAGCATTTC	
     17519	    29	  96.6	    32	..A..........................	ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA	
     17458	    29	 100.0	    32	.............................	AGCAGATACACGGCTTTGTATTCCGTGCGCCC	
     17397	    29	 100.0	    32	.............................	AATAGCAATAGTCCATAGATTTGCGAAAACAG	
     17336	    29	 100.0	    32	.............................	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC	
     17275	    29	  93.1	     0	.A..........................A	|                               	
==========	======	======	======	=============================	================================	==================
        15	    29	  98.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank :  CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAATAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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