Array 1 268355-268086 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHQ010000002.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
268354 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT
268293 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC
268233 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT
268173 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG
268113 27 92.9 0 .......................C-... | T [268093]
========== ====== ====== ====== ============================ ================================= ==================
5 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA
# Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG
# Questionable array : NO Score: 5.99
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 2 277682-277412 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHQ010000002.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================ ==================
277681 28 100.0 32 ............................ TGACGCCATATGCAGATCATTGAGGCGAAACC
277621 28 100.0 32 ............................ GAAACCAGAGCGCCCGCATAAAACAGGCACAA
277561 28 100.0 32 ............................ TGATGGCGCAGCAGTCCTCCCTCCTGCCGCCA
277501 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT
277441 28 85.7 0 ....................T...C.CT | C,A [277415,277418]
========== ====== ====== ====== ============================ ================================ ==================
5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA
# Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT
# Questionable array : NO Score: 5.91
# Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//