Array 1 35420-33929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEHK010000005.1 Halomonas alkaliphila strain LS44 2745.82.con.0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35419 28 100.0 33 ............................ CGGTTGGGATCAAGGGGCACAGCGCGCGGTGTG 35358 28 100.0 33 ............................ CATCATGGGCGATGGCAAGGCCCACAAAGCGCT 35297 28 100.0 33 ............................ CACCTGGCGCTCTACTTTACTCAGCGGCATGGG 35236 28 100.0 33 ............................ CTTTTATGGGCCGCGTTTCTGTTCGTCGCCCTG 35175 28 100.0 33 ............................ TGATTTTCATGCTCGTGTTGTGGATGAGCTAGA 35114 28 100.0 33 ............................ CGCTACCATCGGGGTCGCGGGACAGGCGCAGAT 35053 28 100.0 33 ............................ TTATGCCCTGTCCCAAGCTGCCTGGAAGCAACC 34992 28 100.0 33 ............................ TGCGACGGATGCTACCCATGGTGACCCGCCGTC 34931 28 100.0 33 ............................ TCAGGCTTTACCTTATCTCCGCCAATATGAGCC 34870 28 100.0 33 ............................ TCACATCACGCGCCGCCTGCTCTGAGGCGGCTG 34809 28 100.0 33 ............................ CCTCGCAGTGCAGCTTGCTGATCTCATAGCATT 34748 28 100.0 33 ............................ TCCCTACATCCATTGAAAAACTGTTCAGCTCGG 34687 28 100.0 33 ............................ TCAAGCGGCGAAGTGTGCGCGTCTGAGCCCTGC 34626 28 100.0 33 ............................ TGGACGACCCTGCTCATGCATCGGTTCTGCATC 34565 28 100.0 33 ............................ TGGCGTCGTATGCCTCAACGGCTGCCGAACGCC 34504 28 100.0 33 ............................ CGCTGGCGGCGCACTGGTGAATGGTGCGGGCAC 34443 28 100.0 33 ............................ TGACATCACCCGAGATGGTATCTAGCGTGCAGT 34382 28 100.0 33 ............................ CTCTGCAGGCAGAGTTAGATGAGCTGATGGATA 34321 28 100.0 33 ............................ CAGCTCATTCGCGATCCTGGTGTATCCGTCCTC 34260 28 100.0 33 ............................ CTTGGCCATGCCCACTTCGTCGTAGGTGCGATA 34199 28 100.0 33 ............................ CGCCTACCGCAAGACGCGGCAAGACCTGGATGA 34138 28 100.0 33 ............................ TACCCTATTGGCAAAGCCGCAAAACCGCTTGGT 34077 28 100.0 33 ............................ TCATGGGGGCGTAGGGGCTTCTTAGCGTGCCCT 34016 28 96.4 33 .....................A...... CAGTGGGGAACCACTTCTCAATATGCTCGGCCA 33955 27 92.9 0 .....................-..C... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.6 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TTTATAAGGAACACTTATGTATCGATTTAGCGTTCATGCTAACGCGAGACATGGCCGGTCGTTACAACAAGCAAAAGGTATCTGCAGCCTTCCGTGAGCGAGTCATTGAAATGGATCTCCTTGTACGGTTGGCAGATGACATACCAGACATGCTGGGGGTGAGCCGTGCTCGTGGTCGTCGCAAATGATTTGCCACCCGCTGTACGTGGACGAATGAAGCTCTGGTTTGTTGAACCACGGGCTAATGTATTTGTTTCGGGAGTCAAAGACTCGGTTGCTAAAACGGTGGTCGACTACCTGTATCAGCATTGCCCGCCTGAATCTGGCGTGGTTATTTTTCGTTCCTTACCTAAGCCTCCGGGATATGAAGTGCGAACGGTCGGGCCCACGCGAAAAGCATTAACAGAAATCAGTGGGCTGCAGTTAGTGATTGAAACACTGAAAAACCAATAAACCCTATATCTTGTGTTTAACAGGGAGATCTTTAACAATATACTGGT # Right flank : TTTCCTACACACGTTGGCGGTGATGGATTACATCGCTGCTGCTTTATTTCTGAGACCATAACAACTGTCGCCTTGTTGCACCCGTGACAGTTTCCGCTTCGCCAGAATTCTGCGATAGCAGTCGCCCCCAGCTAGTTTATGGCTGGGGGCTTTTGTTTATGCGTGGGTGAGCTTTTCTAGTGCGGCGTTGGCGAGAAACGCGGAGCGGCTTTTGATGCCGTGAGCGGTGACGTAGTTGTCGATTTGGCGAATGATATGCCCTGGCAGGGTGACATTCACTTTTTCGGTTTTGCCCAGGTAGGGAGTGACATCGATGTCGATAATGCCCCATCCCCAGCCTTCAAACTCGGGGTTTTTCCGGTGTTCTGCGATGCTTCGAGGCATGGGAATGTCCTTGCCTTCATTAGCCAACTCTTCTAGTTGAATGTGTGCAACCTCAACCGCCAATTGATAGGCCTGTTCGGTGGTATCGCCTGCCGTTATCGCCCCAGGAATATCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //