Array 1 476520-473283 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVDI01000001.1 Chroococcidiopsis sp. TS-821 NODE_1_length_1686017_cov_683.891_ID_1239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 476519 36 100.0 40 .................................... AAAGAAGCGATGGAGCTAGCTGTTGTCAAAGGCATAGGAG 476443 36 100.0 37 .................................... ATGATTTTTCGGGGTTAGTTAACGGGCAAATTTACTT 476370 36 100.0 34 .................................... CGGAAAACGCGATTTGTTCTGGGGCAACAATTTG 476300 36 100.0 37 .................................... GTCTTGTCGAGTCGATCTTGTCCGCGGTTCCACTTAA 476227 36 100.0 36 .................................... AGAAATAGGATCGCTAAAAGTGAAATTAGTAGAGTG 476155 36 100.0 39 .................................... ATTTTTGTTGAAGACCTCAACCTCAAAGCAACTAGTCGA 476080 36 100.0 36 .................................... CAGGTAATAAGCATGGGGTATCGCACGTTGTGTACG 476008 36 100.0 38 .................................... GTTAAAAATCGCGCAAAAATACGGAGGTAAATCGACGC 475934 36 100.0 35 .................................... AACCTCGGTATGAAGGTACCGTTAAGCGACCTCAA 475863 36 100.0 36 .................................... GCTGATAGCGATCGCGGACTTCTAGCCAATCGATAG 475791 36 100.0 39 .................................... TTTCGATCGAACGCCACCATTCGCCTCGATTAAGATAAC 475716 36 100.0 36 .................................... AATTTTTTGGAGCGTTCAAAAATCGGTTGTGGGTAG 475644 36 100.0 35 .................................... TGTTGACGACTGGTGGCTGCGTCGTGCTGTAGCGG 475573 36 100.0 36 .................................... AAATCGATTTTTCTCAAGTAAGGTACCTCACTCCGA 475501 36 100.0 37 .................................... GAATTTTACGATTTAACGGGCGGGTATTTTAGCAACA 475428 36 100.0 39 .................................... TGGACAATCAGTGGATTTATTTAATGCCTTCCGATAAGT 475353 36 100.0 37 .................................... CCCAAGATGCAATTGATTGGGCTACTCAGAAGCTCGG 475280 36 100.0 36 .................................... GCGATCACCTCCCGCGAAATTATTGAGCAAAAAATT 475208 36 100.0 36 .................................... CTTTTGGTTTGACGCAACTCGGTGATTGGTTTGACC 475136 36 100.0 37 .................................... AGCGCAAAACTAGCTTCTCTTCACTGCAATTTTATTG 475063 36 100.0 39 .................................... ATCGGTCAAGCCGCGATCCTCGCAAATGGTAGTGAAGAT 474988 36 100.0 36 .................................... CCTCTGGTGGCGATCGCCCGGAAGTTGGTCTGTACC 474916 36 100.0 38 .................................... CACAGCTCGTTCGCGGAATGCTCGGCGATTTCAACTGT 474842 36 100.0 37 .................................... AGTTTTAAATCTACGCCCATTGCTTTTAAAGCTGCAT 474769 36 100.0 35 .................................... ATGTTCAGGATCGGGTTATCGAGTTGAGGATTAGT 474698 36 100.0 35 .................................... AATTTCTCAGGTGGAATAAAGCTGGTGGTAAGGTG 474627 36 100.0 35 .................................... TTACGCGAGGTGACTTTGGCGTTCATTTTGATGCT 474556 36 100.0 41 .................................... AGTGAAATAATCCGCGATACTCTTCTGGAAGCTAGTCGCGC 474479 36 100.0 38 .................................... ACCAATTTATCGTAAACAGGGAGTTTGACACCTCCCTG 474405 36 100.0 34 .................................... ATCTCACACGCATTGCCTAACTCAAACTCCAGCT 474335 36 100.0 38 .................................... ATGGAATTGCGAAGAAATCTTGAAAACCCGATCGTTAT 474261 36 100.0 36 .................................... TACTCCAGTTGATTTTTTAAAAATAAAGGTAAAGCC 474189 36 100.0 34 .................................... AGATTTAATGCCGCAAAAGCGTAAGCATCAAATT 474119 36 100.0 35 .................................... TTCAAAAAAGCGTCCTAACTTATTATGGAAACGTG 474048 36 100.0 38 .................................... AAGAATTGGCGCTACAAAAGCGCCAATTTCTTTTAACT 473974 36 100.0 36 .................................... AACGCCTTGGGGATTCGCTCTCAGTGACTTTTCGGT 473902 36 100.0 37 .................................... TGGATGACGGCAGACAAAGCCCTGAAGAGTGAGCCAA 473829 36 100.0 36 .................................... AGGCTTATATTTGGACTTCAGATAGCGTAAACGTTA 473757 36 100.0 36 .................................... TAAAACAAAAGATTTAATTTCCGCCTCTTTTTGGTA 473685 36 100.0 37 .................................... GACGAAGTTCGCCAATCTCGATTCGGCGGAGCGACGT 473612 36 100.0 37 .................................... ACAACTCACGATTCAACTCCTCCGCGAATATCTCTTG 473539 36 100.0 40 .................................... TTCCGATTTGGTTTTTTCAAATTCGATTAATTCCTCAATT 473463 36 100.0 37 .................................... TTAGAGTCGCGTAGCATTCGCGTTAGCGCGTCTTGGA 473390 36 100.0 37 .................................... TCAACTATGACATGCTCATTACTCGCTTGCGGATATC 473317 35 97.2 0 ...............................-.... | ========== ====== ====== ====== ==================================== ========================================= ================== 45 36 99.9 37 GTGTTTTCACCTTAGATGCCACAAGGCGTTGATCAC # Left flank : TCCCAAGCGATGGCGTAAAGCTTACAAGCTACTGGAGGGTTACGGAGAGCGCGTTCAATACTCGATTTTTCGTTGTTGGTTAAGTCAGCGGATGCGGGAAAAGCTGCGATGGGAATTAGAAAGAGTTCTAACGAAAGAAGATGATTTAATCTTGATTCGTCTTTCTCAGCAGTGTGTGAAGGATTTGCCAAAGTACAATCGTCCTAATACTTGGTTGTTAGACGAAAAAGGTTTTCGGGTAATTTAAAAATGCAAGTACCTCTGAATGTGGCAGCCAAATAAAGCGTGACAATAGCTCTGTACGTTATTTTGTCTAGCTTAGAGGTTAAAAAAACACGTGCTGAGGTGCTTGCAAAACTCCCAAACCTTGACTGTACAGGGATCTTGAAGCCAAGGAAAGTATGTTTTCATCGTCCAATTAGTCATTTCTTGTCATCTATGAGGAGGTGCTTGTGTAATGTAGCAGGAATGCTTACCAAGAAATGGTTTCGGCGGTCGCT # Right flank : ATCGCCGTCAATTACGTCAAGCAGCGTAACCCCTCATCAGCGTTTGGCTAGGTTTACTACTACTTTCTGATATGCAGTACAAATGGCGACGAGGCGAAGATTTTTACCAAGAAGCGCGAGAAGTTTGGTTAACTACTTTGTTAGATTTTACCGCTCGCTGCTGCGACTTTTGCTTTAAAAGTTTCTTTGTCGTCATGTACTGACAGCAGTACAACATCATTTCGCAACGCGGCAATTTCTTTAATTACAGTCGCGCGATCGCGTCCTGATGCTACTTGGCTTTCAACGTAACCTGGAATTTGATCGTGGCTCAAGCGTACTATTTCTATTGGATTCATAGCAGTTCTCCTTGCGAGTCAAGAATATATATTTGCTGATTATCTGCATCGCACGATTGTGTTGTTACATAGAGAAATCCTCCGACTATTTCCATTTTGCAGATAAATCTACGCGCCAACGATAGAACAGCCACCAAACTGCATAGTCTTTCCCATTGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTTCACCTTAGATGCCACAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.60,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 162730-170776 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVDI01000002.1 Chroococcidiopsis sp. TS-821 NODE_2_length_606965_cov_678.629_ID_1241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 162730 37 100.0 37 ..................................... CTCTGGCAGCCTCAGCTGTTACTGCCTCTACTAGGTA 162804 37 100.0 32 ..................................... TGTATACTTGGAATATACAAAGGGAGGGAAAA 162873 37 100.0 47 ..................................... TAGCCGCTAACCCCGCAGCCAAATATCCCAGTCAATTCAACGACAGA 162957 37 100.0 37 ..................................... TGATTCTCAAACTCTCGCTGCTGTAGAAGTTTCTGCG 163031 37 100.0 35 ..................................... AAATGCGCAATGCGGGCAAGTGTGTCGTCTTTTGG 163103 37 100.0 38 ..................................... GGCAGTTCGGTGGCTATCCGGAGATAAATCAGGTTTGT 163178 37 100.0 33 ..................................... ACGCCTTGACCAAAACTCTCCTAGCTTCTACCA 163248 37 100.0 33 ..................................... TTTTCTAAGTAAAAAGAAAAACGATTTCCTGGA 163318 37 100.0 39 ..................................... CTAAGATTTCTCCTTTTTTTAGAGGAAAGATTTCCGCGA 163394 37 100.0 37 ..................................... TAGAAGAGCCTAGAAGACCAGGTGATGCCCTTTTAAG 163468 37 100.0 34 ..................................... GTCAATGGCAGAATGCTTCCTGCACCTTCTATTT 163539 37 100.0 38 ..................................... GTGGACGCTACTGCGCGATTGTGAGTCTAAAATGCGCG 163614 37 100.0 36 ..................................... CGAAAACCCGGAGGACGAAAGTATCCGTAGAAGATT 163687 37 100.0 35 ..................................... TTTAAGCGCGATCGCTTTTTGCAATTCCATCCCCA 163759 37 100.0 36 ..................................... AGATCCAGTTTCGGCAGCGATCATTGTCCACAGAAT 163832 37 100.0 37 ..................................... GTAGGGGAGAGTACCTTGCGTGGCTCCCCACAAATTG 163906 37 100.0 36 ..................................... GACAAACTACCTGAAACGCTCTCCCTGACGGAGTTT 163979 37 100.0 34 ..................................... TTTCTGAGCGACTTTGGCTAGAACACATGCTGGA 164050 37 100.0 43 ..................................... CTTCTAAAGGAACATCGAAATAATTGCATAGCACTATTTCAAA 164130 37 100.0 37 ..................................... TAGGTGATGGATTACAATGCAGCCTACGTTTGCTTTC 164204 37 100.0 34 ..................................... TTCCCGGTAAGGAACCTCAAAAGTGGGGTAGTGG 164275 37 100.0 38 ..................................... CCCACTGGTCGGTGACAGGCTCAACCCAGCGATCGCGA 164350 37 100.0 36 ..................................... AAAGCCGCATTACGCAAAGGGGACGCAGCCGCGATC 164423 37 100.0 37 ..................................... AATCCAGGATTTCACCCTACCAGTGACAGCTACCAGC 164497 37 100.0 35 ..................................... TGACGCGCCAGTAAATACCACTATCCCCAACTCCG 164569 37 100.0 35 ..................................... TCCGGACAGCCACCGAACTGCTAACACGCAACACA 164641 37 100.0 41 ..................................... GGCAACCATTTCCCCACTACTGGGCGTAGGAGTTATTACCC 164719 37 100.0 34 ..................................... AAGTGAAGCGATTGTATTTGTATTGGCAAGCAAA 164790 37 100.0 35 ..................................... GGGTTCGGGACGAAACCAACTGGTGACAATGATGG 164862 37 100.0 41 ..................................... TTTCGATACAAAGGTATTCATCGCATTCGTACAGCTCGTAG 164940 37 100.0 36 ..................................... GCGTATATCCATGAAGAAACAAGATATCTTTGTATT 165013 37 100.0 45 ..................................... AATCAAGGTGCGCTTTATGGCTGGGCGGGGCAGTGCGCCAAACTG 165095 37 100.0 36 ..................................... TGGCTAGCAGAAAATCCACCTGCTGCCGCTAAAGTG 165168 37 100.0 34 ..................................... GTTTCTTGTACCAAATACCATTTTGAAGGGATAG 165239 37 100.0 34 ..................................... TCTAAGTAAATATGCCGTCCGTCAGTTGACAAAC 165310 37 100.0 33 ..................................... GAACCAGCAATCCTCCCCTTTGCCTTCAAAATC 165380 37 100.0 35 ..................................... GAATAATTTGGGCTAAATCAGGGGCAATTGAAGCT 165452 37 100.0 36 ..................................... AGAAATAGTTAATCCTTTCGATGAAATTTTCAAACA 165525 37 100.0 34 ..................................... GGCACTGAATTGCAATCCGAGACAACAGCGGCAG 165596 37 100.0 36 ..................................... AGCGTGGACTCCACCAGCTACCAGTCGTCTCTCGCG 165669 37 100.0 33 ..................................... CGTGGCAACTCGCGGCCTTACTGGGGGGACCGC 165739 37 100.0 40 ..................................... ATTATGTTTGACGCTCGTATCGCTTTTAGCTGTTTTGTAG 165816 37 100.0 36 ..................................... TCAACGCCAGGAGAGAGAACTGATCCACTATGCACT 165889 37 100.0 48 ..................................... CTTCCTTACCGCAAGCTCCCCCGGCATATCAAGAAGATGCACCAGAAA 165974 37 100.0 34 ..................................... AATTAGTGTATATCAAAACTATATAGTTTTGCAG 166045 37 100.0 36 ..................................... AGTACAAAAAACAATTCAAAAAGAAGTAACACAACA 166118 37 100.0 37 ..................................... CGTGCGATCGCTGCCTAACCGAGCGGAGTGGTTGAGG 166192 37 100.0 35 ..................................... GTCAGTAAAAGGCAAAAAGCATTCTCCGTACTCCT 166264 37 100.0 37 ..................................... GGGATAAGTTTGATTAAGAATTGATTTGAGGCATTGA 166338 37 100.0 33 ..................................... CAAGAAATAAACTGGAGCGACAAAAAGTATAAA 166408 37 100.0 36 ..................................... GCCAAACGAAAACCATTGCGATCGTTTTCATAGCGC 166481 37 100.0 37 ..................................... ACCCAATAGTGAACTTGCTGAAGTACAATTGCTTCTT 166555 37 100.0 34 ..................................... GTACCGAGGGCAGTGCTATAAACTGCATGGCTAT 166626 37 100.0 37 ..................................... AATTTCTTTTGGTAATGCACTGCCAATAAACGATCCA 166700 37 100.0 34 ..................................... TTTCCATATCCTAACCCTCCGCGATCGCCGTGCC 166771 37 100.0 42 ..................................... TACAACTTGCTGGATCTGATCGACGCCAAAGTGCGATCGCAG 166850 37 100.0 34 ..................................... AAAAGATGCACGAACTTTGGACGACGAGGCGCTG 166921 37 100.0 36 ..................................... TTCAGGTGAAGGGGAATTCCTTAGACTAGATTGAAT 166994 37 100.0 37 ..................................... AAGCCTTTTCCAAGGAGGGGATTGTTGAAGAGAGTTG 167068 37 100.0 37 ..................................... AGCTCGTGCGCCACCTTCCAAAACCAGTCCTGCCTAC 167142 37 100.0 34 ..................................... AACTCAAGTAGGATTTACTCAAGATAATCGCGGA 167213 37 100.0 40 ..................................... TTCGCTATAGTAGCTCACTTCCTATAATACAAATACAGGG 167290 37 100.0 39 ..................................... CACACAGGGCGTAGGAACTCGCTAGAAACGAAGGATATA 167366 37 100.0 37 ..................................... TTGAGATTGCTGACATTTCCCACTACTTCGCCAATAT 167440 37 100.0 40 ..................................... GATTTACTGGCGATAAATAGCCAAGTGGAATAATGTTTGT 167517 37 100.0 35 ..................................... AGTACTAAGTTTCCGAATATCTCTAAAATATTCAC 167589 37 100.0 34 ..................................... CACTTAGGTTCTGGGGTGGGAGGTAGTAAAAAAG 167660 37 100.0 36 ..................................... GACCCAATTAAATAGAAAAGCACTTGATGTACACAA 167733 37 100.0 35 ..................................... CTTCAGCGCCTTGATGTTCCTGCAAGCCTCCCTAG 167805 37 100.0 34 ..................................... GCGCAACAACAAGCAGGACAGGCACTACGACAAT 167876 37 100.0 38 ..................................... CTAAGCTTAAAAAGCTAGGAATTTTCTTCGGCACTAGA 167951 37 100.0 37 ..................................... ATGCGATTTGGGCAAGTTGCAGGGCAATAAAATTCTT 168025 37 100.0 35 ..................................... ATAAATAAAATTTGGTATTGATGTATAACTACCCG 168097 37 100.0 33 ..................................... ACCGCAATTCACTGCAACACAGGCACCAAAGAA 168167 37 100.0 33 ..................................... CTACGCGATCGCAGCAAAAGATGGATACCCCCT 168237 37 100.0 36 ..................................... ACCGCGTAGTAGTAATAAGTTTTCGCAAATCATTTT 168310 37 100.0 33 ..................................... AGGTAACAAGGAACGCTACTTTTGCTGGCTCCC 168380 37 100.0 35 ..................................... AAGGAAATGGGGTCGATATTGAAACTGAATTGTAT 168452 37 100.0 42 ..................................... TTGAAACGGTTTCTTGGTGGGCGGATAAACCTGATTTGTCTC 168531 37 100.0 33 ..................................... GTCGTTACCGACTCCAGGACTGGGGAGGTAAGA 168601 37 100.0 38 ..................................... GCACTAGATGAATCGATTGATTTTTCAAGCTCCTCCGG 168676 37 100.0 34 ..................................... ATAGCCCCGCTTACGTGTACTGGCGGACAGGAGC 168747 37 100.0 37 ..................................... TGTCGGTGGTATCCCAATTGCTCAGAAATTACGCAGG 168821 37 100.0 35 ..................................... TTCAGTTTTTCTACTGCTTCTCTCAATTCGTTGGA 168893 37 100.0 33 ..................................... GACTTTGTAAATTTTTGTGCCAGTTCGTTATTG 168963 37 100.0 37 ..................................... TCTAGGTAAATATGCCGTCCATCAGTTGACAAACAAT 169037 37 100.0 37 ..................................... GATTCACACGCCCTGGAGCAGCAAATTGATAGATTGA 169111 37 100.0 39 ..................................... AACCTCGGGCTTAGAGGATTCGCTGAGACCATAAAGAAG 169187 37 100.0 37 ..................................... CTCCGATCATCTCTGAATTAAGAGCAATGCGATCTAT 169261 37 100.0 41 ..................................... CTCGTCGCCAGAAGTTTTTAGTATGAATTTGATATTTTCTG 169339 37 100.0 35 ..................................... AGCCAGCGTATCTTCAATAGTTAGCTGCACTTCCG 169411 37 100.0 39 ..................................... CATGAACAATATTAAAAATGCTAGTAGTTTTGAGTCGAA 169487 37 100.0 38 ..................................... GGTTTCTTGGTGGGTGGATAGACCTGATTTATCTCCGG 169562 37 100.0 37 ..................................... TAGATTTCGATACCGAATTGATATAGATCCTCCTCTC 169636 37 100.0 34 ..................................... AAGTGGCACAAACAACGCAGCTTTTAATCAAATT 169707 37 100.0 35 ..................................... CACAATTTAATCTCTAATCCCCTATAGAGCGATTT 169779 37 100.0 35 ..................................... CGAACAGATGCTTTGCGAACAACTAAATCCTTCAG 169851 37 100.0 41 ..................................... GCATTCCTGCAACAATTTGCCAAGTCGATTGCAAATAAAAA 169929 37 100.0 35 ..................................... GCTGATACATGAAAATGCCAATAATGTTTTCTCGA 170001 37 100.0 44 ..................................... TTTTTCCGCTCCTCTGCCAGTAAAGCCTTTGCGAAGCACTTGGA 170082 37 100.0 34 ..................................... AACCGATAAATAAGTGAATCGTAAAAGCCCAGGG 170153 37 100.0 37 ..................................... GCTGCAATTTGCTCAAATACGCTATTGTAATCAGATG 170227 37 100.0 36 ..................................... AGATGCCCCTCCCAACCTGGCTCTCCTGGGCTTAAA 170300 37 100.0 35 ..................................... CAATTCCCGCTTCCCTTATTATACATGATTTACCT 170372 37 100.0 37 ..................................... TGCTATCGATTTCCCTTGGCTTAGTCTGTGATACAAA 170446 37 100.0 34 ..................................... CAGACCGGGGAGTCGCGTTCAGCTAGCTTGGGAA 170517 37 100.0 36 ..................................... CCCGATATCGCGTAATTCGCGATCGCTTCGTAAATC 170590 37 100.0 36 ..................................... ACACAAGTAGATGACGAAACAAGCGCATTTCCATAT 170663 37 97.3 37 ....................................T ACTACGAAAAGTCGCAGTAAGCGAAAGCTTGCGATCA 170737 36 86.5 0 .............................C..-.CCT | GTT,C [170763,170768] ========== ====== ====== ====== ===================================== ================================================ ================== 110 37 99.9 36 GTAGAAATCCCTTTTATTGAAGGGACTAAATTGAAAC # Left flank : ATATCTTCCCTGGTTAAACCTTCAGGGAACTCCTACTTACCGAGAGTACAAAGATCATTTAGCGCTCTGTCTCGACGGTGAGGTTGCTATTGTTGCATCCTGTAAACCATTTCCAGGATTTTGGAAATGGGAATCTGAGTGTCGCCAGGGTAAAAAGGTGGGGCAAGTTGGCTATCAAGTGCGGTTAAAGTTTGCCACTATGGTGACTGGACCAATTATCCTAGGGTATGCAGCACACTACGGCTTAGGCGCAATGGTTCCCACGCGCGAGTGGGTGGGTGTTTATCAAGGAATCATTCAGAATAATGATGTGTTAATGATTTCAGCCAATTAGTTCGCTATAGATTCGCGCATTTGCTGAAACGGTTGTATATCAATGATTTCAAACATCCTCTTGTACTTGTGAACCAGTGATTAGTATAATTGTTTTGACAAATGCGAAAGCAATCGCGCACTCGAACCTTGAAAACCTCATACAGAAAAACTTCGAGAGAGCCGCA # Right flank : TAACAAACTAGCAATATAGAAATCCCTTTCACTGGAGCAAGAAGTGTTACAAACAGCCACGTAATTGAAGAGACTGCAATGAAGTTTTACTCTAGCGCTAACTGCGGTTCTAACTCTTGAGTTGTATTCACCTCTTGGACTAAATGTTTTTCAGTGGTGAAAGCCTCAAATGCTGCTTGCTGTGCTTCTAATAAATCTACAGTTGCATCTGCAATGTCACCAGTGCGCGAAGACAAGCGATCGCGTAACACTTCTACTGGTGCTGTACAGTGGATAATCTGTAGTGGTATTTGCTGCGCTTGGGCTTCGGCGATCGCTGCATGACGGAGAGAAGTGCGATCGTACTTCGCGTCTAAAATTACGGTATAACCTTGACTTGCCAACATAATCCCCAAATCTAACAATCGCGCATAAGTTTTTTGCGTCATCTCGGCGGTATAAATTTCATCTCCACCACGTTCTAGTAGGGGAATTCCTGCTAGATGCTTGCGCACAGCATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATCCCTTTTATTGAAGGGACTAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 34-368 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVDI01000044.1 Chroococcidiopsis sp. TS-821 NODE_55_length_413_cov_1.12587_ID_1347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 34 37 94.6 37 ...............G..............A...... AGCTCGTGCGCCACCTTCCAAAAACAGTCCTGCCGAC 108 37 100.0 34 ..................................... AACTCAAGTAGGATTTACTCAAGATAATCGCGGA 179 37 97.3 40 ...........A......................... TTCGCTATAGTAGCTCACTTCCTATAATACAAATACAGGG 256 37 100.0 39 ..................................... TACACAGGGCGTAGGAACTCGCTAGAAACGAAGGATATA 332 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 98.4 38 GTAGAAATCCCTTTTATTGAAGGGACTAAATTGAAAC # Left flank : CTTTTGCGAGGAGTGGATTGAAGAATAGGGTTGG # Right flank : TTGAGATTGCTGACATTTCCCACTACTTCGCCAATATGTAGAAAT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATCCCTTTTATTGAAGGGACTAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 166058-173246 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVDI01000003.1 Chroococcidiopsis sp. TS-821 NODE_3_length_569273_cov_679.569_ID_1243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 166058 37 100.0 35 ..................................... TAGTCTACCAAGGAGTTTATGGCTAATTACTACGG 166130 37 100.0 33 ..................................... GACAAACTACCTGAAACGCCCTCCCCGACGGAG 166200 37 100.0 33 ..................................... AGCACGGCTTCTTCCAGTAGGGCGGGGATTCCT 166270 37 100.0 35 ..................................... CCAGCCCGTAGCCCCCAACTAAATACCCAGTAGTC 166342 37 100.0 35 ..................................... ATATAAGCCTGTGGAAAATCATTTCTCCATACCTG 166414 37 100.0 36 ..................................... CACCCCGATTGCAGTGAGCGACGACTGGACTCCTGC 166487 37 100.0 35 ..................................... AAAAAGAAGTACCTTGAATCGGAGATCAAGATAGA 166559 37 100.0 35 ..................................... GACGCACTGTACAGCTTCTTCCAGGGCGCGGAAAT 166631 37 100.0 35 ..................................... GACAAACCGCAAAAAGAACCCGAAACCCTTGCAAA 166703 37 100.0 34 ..................................... CGGCTTCTACACCAAACCGGTGGTGTTTGACGCG 166774 37 100.0 45 ..................................... ACGAACTTGGGTGAATTCGCTTGGGCATATAATCTCCGTAATCTC 166856 37 100.0 40 ..................................... ACGAACTTGGGAGGTAGTGGTAAATGGCGTAGCCGCTATG 166933 37 100.0 37 ..................................... CGTGCCTTCGCTTGCCCATTTCGCTTGTGGTGGTTGC 167007 37 100.0 36 ..................................... CCAGAAACCCACGCTGAGCCTCAAGGCGCTAGCAAG 167080 37 100.0 41 ..................................... ATCGATTTTTCTTACCAAAACTTCCCTAGCTTGGGGCTAAA 167158 37 100.0 35 ..................................... AACTTCAGGCTTAGAAGATTCGCTGAGACCATAAA 167230 37 100.0 37 ..................................... CCAGATAAGGGAAACATTTCAAATATTTCTGGATACG 167304 37 100.0 36 ..................................... GACGCAGAACTTGCTCGAATCGCAGATCTTTCAGGT 167377 37 100.0 34 ..................................... AATCGCATCGTAGCTTCTCGATCGATCAAATCTT 167448 37 100.0 34 ..................................... TTGGCGAACATTTGCCCCAAAATATTCGACTATT 167519 37 100.0 36 ..................................... AATCAGATACTTCTAGGATGCTACACATCGCAGTCT 167592 37 100.0 35 ..................................... TACCATCGCTTTGATGCGCGTAATCTCGCTGAAAG 167664 37 100.0 37 ..................................... AAACATGGAAAAGCTAGCAACAGTAGACGCAAATAAA 167738 37 100.0 41 ..................................... AGCAATCTCAAAACCATGGGGTTGATTGACTTAGAGGGCAA 167816 37 100.0 33 ..................................... CAGAAGAGATGCTAATTCGGTTTGATACCGAAC 167886 37 100.0 34 ..................................... TGCGTGCTAATCGAAATTCGGCGGGATTCGAAGA 167957 37 100.0 35 ..................................... CTGTTCGCATAAAAAACAAGCGCAGCCATCCGGTT 168029 37 100.0 35 ..................................... ACAGCTTCGGGCGATCGCTCTGCTATTGATGCTTT 168101 37 100.0 34 ..................................... GCCAGTCCATCATCAAAGAGGAGAGTAAATAGAG 168172 37 100.0 33 ..................................... TCCAATTAAGATATCGGCGTACCTGTCCACCCC 168242 37 100.0 38 ..................................... AATTCAACGACAGAGACTGGAGGCAGACGAACGCGGGA 168317 37 100.0 33 ..................................... CAGCGATTTGTTCTTTGAGGAGGCTGATTTCAG 168387 37 100.0 35 ..................................... TTCAGGTGAAGGGGAATTCCTTAGACTAGATTGAA 168459 37 100.0 36 ..................................... ATGATATTTGATTCTTGAGCAAGCGCAGCAGCGATA 168532 37 100.0 41 ..................................... AAAAAAAGAAGCATGAGCGGAAACCGTAAGGCGCTTTTCGA 168610 37 100.0 43 ..................................... ACCCTGTACTATTTAAGTAAGAAACCAATTCGATCGAAGTCGA 168690 37 100.0 33 ..................................... ACCCTGTACTCGCTCACAAAAAGAGATCTCCGT 168760 37 100.0 35 ..................................... TCAATCCTCAAAAAAACGCGAGTAATTTAGTAATA 168832 37 100.0 35 ..................................... CCGAGTACAGTGAGGGCTTCCAAAAATCACTTCTT 168904 37 100.0 35 ..................................... ACTTACGGAACGGCGCAAAGACAACAAGCGATCGC 168976 37 100.0 36 ..................................... CTTTTACCACAAAATCCACAGCCAGACCGCGCACGT 169049 37 100.0 35 ..................................... AGGAGTACTGCTTGCGCTTGCAGCATCCAGACATG 169121 37 100.0 36 ..................................... AGAGCCCGCATAAATTGGCTGTCGTGCCGTGATGGG 169194 37 100.0 34 ..................................... AAAAATGACAGAAATCCTTACACCATAAGGATTA 169265 37 100.0 45 ..................................... AAAGAGCTTTTAGAGAATGCAGAACCAATTACAGTGAGGGATAAG 169347 37 100.0 34 ..................................... TAGTAAGGGCACCGGTATAGAAATTCTTTTAAAA 169418 37 100.0 36 ..................................... TTTACAGGACTGGCGCGAAATGCTTTCTTTGTAAAT 169491 37 100.0 37 ..................................... TCATCAATACCTTCTTGCAGGGAACATCCTATGTCGG 169565 37 100.0 35 ..................................... GCCCTTGCCCCTCGGATCGCCGATGCAGTTCCACA 169637 37 100.0 34 ..................................... ACTCAAAAGCAACATCAAAGATGAGACGCGCCAC 169708 37 100.0 34 ..................................... TCAAGGTATCCGTCGCTGAAGACCCCACAGTAAG 169779 37 100.0 35 ..................................... GTAAGCGCAATAGTGTGGAAGACTCTTGCAACCCC 169851 37 100.0 39 ..................................... AGCGAAGGCTTCTGGAGAGAAAGTGTAGGTGGCAGGAGA 169927 37 100.0 34 ..................................... GACAAGATAGTTGGAGAAAAAGAATTAAACCAAA 169998 37 100.0 37 ..................................... ATCGATGGCAGTCACTGGGACTGGGATGCGGAAACCA 170072 37 100.0 36 ..................................... CTGCCAGTGTAGAGGGGCTAGCAACTACGCTTTTGG 170145 37 100.0 34 ..................................... TGTAGCCGCCCCGACCGCCACCTTTGAATATGCA 170216 37 100.0 37 ..................................... TGGTTAAGCGATCGCGGCTTTACTGGCGGAGAAACTG 170290 37 100.0 36 ..................................... CTCGATTCTCGTTATCAGTTAATACCCTGTCTCGCT 170363 37 100.0 42 ..................................... CCATCGTAAAGAAGCGAGTTGTGTTACACTTGATAATCCAAA 170442 37 100.0 40 ..................................... AAACCACACTTCACCTAGGTAAATCGTCCCTTTTTTTAGA 170519 37 100.0 35 ..................................... GATAATTGTTTAACCATAGGGTAACTTGAGTATGT 170591 37 100.0 40 ..................................... GCGTTTGCCCCGTGCATTTTTCGGAATTTAGAGTGCAAAG 170668 37 100.0 39 ..................................... CCCGATTGGATACACCTACATCAGCCAAAAGGAGATAGA 170744 37 100.0 35 ..................................... TAGCGCGTTCTGAGAAGCTGTCAACTGAGTCGTTG 170816 37 100.0 36 ..................................... AAAGATGGTTAATCCTTTCGACGAAATTTTCAAGCA 170889 37 100.0 36 ..................................... AATTACCCGAATCAGTGCTCTGTTGCGCCCTCCTGC 170962 37 100.0 35 ..................................... CGGAAAGCTAGGATCTTGGAAAGGAGAGTCAGCGG 171034 37 100.0 43 ..................................... CTTTTGGAAGATTGAGATCGAATTTCGAGATTCTCTAGCTCTA 171114 37 100.0 34 ..................................... GAATTTTTGGAGACGCAAACAAAAACACAAATAC 171185 37 100.0 34 ..................................... TACATCTACCGCAGTAAGGGTGGTGGTTTCGGAG 171256 37 100.0 34 ..................................... CACCTGTAAGTGACACCCAAGCGGAATAAGGGCT 171327 37 100.0 41 ..................................... AAAGTAAGGAACCTGAAAGGACTCGTAAGCAAGCTCCGGAG 171405 37 100.0 35 ..................................... TTCTAAATTGTGAATTTGAAGGGAGTGGCTACAAA 171477 37 100.0 37 ..................................... CGAAGGTGCAAAAGTATTGACAAAATCATCCAAGTTT 171551 37 100.0 40 ..................................... TGCCGTAAAGGCGCTGGTGGAAAAATGAAAACCAAGGTAA 171628 37 100.0 36 ..................................... GCAGATCAGCCAATTCGGTGGAGGGGAGGAGACACT 171701 37 100.0 36 ..................................... CCTGTCAGCTCTACAGGTCTCCCCCCTTGTACCCGA 171774 37 100.0 34 ..................................... CTTTACGAACGAGGCAATTGAGACGATCAAGATA 171845 37 100.0 33 ..................................... AAACCTACTACCTAGGAGAAGAGGCGATTGACT 171915 37 100.0 35 ..................................... GGGGTAGCTTGCCCGCCTTCCTTAATAAGTTCCTC 171987 37 100.0 35 ..................................... TACGGGGAAGGAATTTTTCTGGGCAGCGGCTTACT 172059 37 100.0 36 ..................................... TTGAGAATCTCTATTTCTAAAAAAAAAAATGCAATC 172132 37 100.0 37 ..................................... GTTTCTCGATCAATCATCTCCTCGTACTCCCAAATGA 172206 37 100.0 34 ..................................... TAACGCGCAAGGGATTTGAGCTTCCAGTATCTCT 172277 37 100.0 35 ..................................... GATTTTCCTTGTCTCAGGATTTGGAGGGAAATCGC 172349 37 100.0 31 ..................................... GCAGTGAACTGCGGTAACCTTACCTTGTGGA 172417 37 100.0 36 ..................................... GCAGGATTCCGCCCAGCAATCTCAGGAGCGAATGCA 172490 37 100.0 38 ..................................... CCCATCGGGCTGAACTGGTCTGAGGTGTTCTGGGGTGA 172565 37 100.0 37 ..................................... CAGATGACATTTATACTTCTGATTTTATTCCTGATAA 172639 37 100.0 33 ..................................... CCTGCAGTGCCTTGCTGGTGCCGAAATGCCAGT 172709 37 100.0 33 ..................................... TTTCACTGCCCCTAGATTCACATGGCTCAGGAG 172779 37 100.0 35 ..................................... CTCGGCATCCCAAGGTTCTTCAGCTTCCCAAGGTT 172851 37 100.0 36 ..................................... CTTCTTTTCTTTCTTGATTGTGAGGGGATTCAGTTG 172924 37 100.0 34 ..................................... CCAGGTTCGGAGGTTTGGGTATCTCCCGCCGAAC 172995 37 100.0 33 ..................................... GCGCCGGCAGGTAAATCAGGTATAATAAAGGAA 173065 37 100.0 33 ..................................... GCTGGAAATAAATTCCAAGCGCAAGGCAGAGAT 173135 37 97.3 38 ..................................G.. ACGTTTGTTTTCATTTTCTTTGCCTGCTTTTTCCAGAG 173210 37 89.2 0 .......G............T.......A.......T | ========== ====== ====== ====== ===================================== ============================================= ================== 99 37 99.9 36 ATTTCAATTAATACAAATCCCTATCAGGGATTGAAAC # Left flank : AAATTCACTCAATTCTCAAATCTTACGGTCAGTGGGTACAGTACAGTATTTTTGAATGTAACTTAACTGATAGCCAGTATGCGAGAATGCGATCGCGTTTAGCTAAACTCATCAAAACTGAAGACAGCATTCGCTTTTACTTTCTGTGTGGATGTTGTCAAGGTAAAGTAGAAAGACTTGGCGGAGAACAACCACGAGATGAAACTATCTTTTTTGTTTAGGCGAAACAGTCAATTTTGAAGTGTACTTGCGCGGAAGGGTAGCTGTTTATCTTAGCTATGTTTAAAAAAGTAACAAAAGTCTCTATATAGAAGTGCTACAAGCCCTTTTGCCCTACCTTTAGATCCGCGCAACTTCTCAAACGCTTATTAAATATAACTTTTCACTTGTAATTCTACCTATTTTTATCTGTGTTCTTGACCTTTAAATGCTAAAATTGTGTATATATCGCGCAACTGTACCAGGAAAACCACATACTGTAACCTTCTCAGCCACCTGCC # Right flank : TGCTACATACCCATGTATTAAGTAAAAGAAAATCACTTAAAATCAATCCTATTCAACAATTGTAATCAAAGATTGACGTTATCCTTTGGTACAGTTTTCTTTGTAATTAATGATATGTTTCTATGCATGTTTTTCGTTGAGCGTTTACTCAACCTCTTATCTATAAATATTTCTTTTCAAGAAACTCTTATGCTAGCTAAGGCGGGCAGGTAGAAGAGCGATCGCGACGATCGCTAAATAAAATCGGCGCAGAAACAGTTTCCAGCTTTGCAACGTTTTGAATTCGAGTGGTTCGATACCAATCTTGCCGCACCAGAATCAAGGTAAACTTGGGCAGCACTATGCCAAAGGCGATCGCAGCGATTGGAGTCAGCCCGTTGATGTACCAAAGAACTCCGACACCCACACTTGCGATCGCATCATACATCACCCCTAGAACGAGCGATCCAGTCTTGGGATTGCGCAGTTTCACGGTAAAAATGGCACTGCTAAAAAAAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTAATACAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 355-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVDI01000051.1 Chroococcidiopsis sp. TS-821 NODE_73_length_401_cov_0.90146_ID_1383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 354 31 100.0 42 ............................... CACTGCATTCTTGCAGATAAAGCCCTGAAGAGTGAGCCAAGC 281 31 90.3 41 ....C..................CG...... CACAGGCTTATATTTGGACTTCAGATAGCGTAAACGTTAGT 209 31 100.0 41 ............................... AACTAAAACAAAAGATTTAATTTCCGCCTCTTTTTGGTAGT 137 31 100.0 42 ............................... CATTGAGGACATCGTTGATCTCGATTCGGCTGTGCGACGTGT 64 31 87.1 0 .......T.............C.CA...... | ========== ====== ====== ====== =============================== ========================================== ================== 5 31 95.5 42 GTTTTCACCTTAGATGCCACAAGGCGTTGAT # Left flank : GTTGATCACAACGCCTTGGGGATTCGCTCTCAGTGACTTTTCGGTG # Right flank : TACTCTAATTCAAGTTTCCACCTTTCCGCGCATT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCACCTTAGATGCCACAAGGCGTTGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //