Array 1 21088-19613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDUR010000052.1 Escherichia coli strain GDB8P75M GDB8P75M_contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21087 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 21026 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 20965 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 20904 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 20843 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 20782 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 20721 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 20660 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 20599 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 20538 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 20477 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 20416 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [20390] Deletion [20376] 20374 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 20313 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 20252 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 20191 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 20130 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 20069 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 20008 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 19947 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 19886 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 19825 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 19763 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 19702 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 19641 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6106-7354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDUR010000004.1 Escherichia coli strain GDB8P75M GDB8P75M_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6106 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 6167 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 6228 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 6289 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 6350 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 6411 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 6472 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 6533 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 6594 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 6655 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 6716 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 6777 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 6838 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 6899 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 6960 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 7021 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 7082 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 7143 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 7204 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 7265 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 7326 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //