Array 1 1338261-1337237 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP021886.1 Helicobacter apodemus strain SCJK1 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1338260	    36	 100.0	    30	....................................	AACAGTAATGCCCGGGATTTTAGTCCCCCA	
   1338194	    36	 100.0	    30	....................................	TTGCAGCGTTTTTTAACCCACGATTGCCTT	
   1338128	    36	 100.0	    30	....................................	TAAAAAAACAATCGTTTATTCTGGCTTTTA	
   1338062	    36	 100.0	    30	....................................	TGTCTTTGAATGATAGTTATAACAATATGG	
   1337996	    36	 100.0	    30	....................................	ATAAACATTTTAGACATTCTAAAATAATGT	
   1337930	    36	 100.0	    30	....................................	AAACACTCGCAAACAAAAATACAAATAGAA	
   1337864	    36	 100.0	    29	....................................	AGAATATCTAGCCTCAAAAAACACATCTA 	
   1337799	    36	 100.0	    30	....................................	TCTAAAGAAAAGGGTATAGATATTCAACTT	
   1337733	    36	 100.0	    30	....................................	TTAGAAGCTTTTGAATAATATAAGCTTAAG	
   1337667	    36	 100.0	    30	....................................	ATATTTTACCATCATTTGTACTAACCTTTA	
   1337601	    36	 100.0	    30	....................................	TTTGTTTGTCCTTTATTCAAACAAGTTAAA	
   1337535	    36	 100.0	    30	....................................	CTTTTACGAGAACTCATCTCCACACGTAGA	
   1337469	    36	 100.0	    29	....................................	TCTACATTGTTGATGGTGTTATGGACTAA 	
   1337404	    36	 100.0	    30	....................................	CCAACGGGGATAACGCCTAATAACTTAGCA	
   1337338	    36	 100.0	    30	....................................	AAATATTCTAGTAGTGAGACAACTATAAAT	
   1337272	    36	  88.9	     0	......................T....GA......T	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.3	    30	ATTTTACCATAAAAGAATTTAACAAGCAGCTAAAAC	                              	       

# Left flank :   TGCAATATAGCGTGTATATGAGAATCTGCAAAGGTGTAGCAAGTGCCAATAATTATTTGGATAAGGTAGGTTTGATTGTGCCTCCCAAAGGGCATATTAGGGCATTAATCCTTACTGAAAAACAATTTGATAATATGCGGTTATTGCTAGGCGGTAGAAGTGAAAACGAAAAAGCAAATGCACCAAGACAACTTACGCTTTTTTGAAGGTTGGTTTTGACACTAAAAGATTTGCAATTAAAGAATGTTTTAGAGAAAATAAATCAACTTTTTAAGTAGGAGATAATCTTTGCTAAAAAATAAAACGGGTGAGCTTAGGGATTAACTAGGCTAACACCCTTGTGTTAGCTTAACCCTGCAGGAAGCTCACTTCCCTTATTTTAGCCGCTTGTTAAATTCCTTAGGATTATATCTTAGATTTTCTTAAAAATCACTCATTTAGGATATTTTACACCCTTAAAGTCTTTCAAATACCGCAAAATACGATAATTTGGAAAGTGT
# Right flank :  TGTTTGATATATTAGGTTGGTAGTTGGTATATTTTTCCTTGGAATTGCAATTATAGTAAAATGAATAAATTGTAGTTAAATTTAAAAATATTTACCTAATGTTTAAGTGAAATATTTATAATAAAAATTTCTTGAAAAAATCAAAATATATAAGGAGAAAACAATGAATAGAAGGCAATTTTTGCAGTTTAATGCCCTTACTTTAGCAAGTGCTTCTTTAGGTTATGCAGCAAGCGGGATGTCAGAACATAATATGAAAAATATGATGAATATGCCTATGACACACAATATGGGTGCTATGAATATGGGTGATATTGATACTTCTTTTATCCAATTTGCTCCAGATAATACCAGGCTTTTAAATCGAAAAGTCTTTCTAAGTGGAGAAAATTTAGCTCCCTTAAAACTTTTGGAAAATGAAAGCAAAGAGAAAAATTTTTTTCGTGCAAGTATAATAATTGCAGAAAGTGAAAAAGAATTCGTTAAAGGTAAGAAAACGC

# Questionable array : NO	 Score: 3.22
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTTACCATAAAAGAATTTAACAAGCAGCTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//