Array 1 113281-111849 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDGD01000002.1 Escherichia coli strain VREC0495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113280 29 100.0 32 ............................. CGATCCGGGCGTGCCGTTTGTTGCTCGCGGTA 113219 29 100.0 32 ............................. ATTATATATATCAAAATATTGGTCCTGTATTT 113158 29 100.0 32 ............................. CAGATCGTTAAGGCAAAAACGCCCCAACGAAT 113097 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 113036 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 112975 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 112914 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 112853 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 112792 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 112731 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 112670 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 112609 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 112548 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 112487 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 112426 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 112365 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 112304 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 112243 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 112182 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 112121 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 112060 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 111999 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 111938 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 111877 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129604-128782 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDGD01000002.1 Escherichia coli strain VREC0495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129603 29 100.0 32 ............................. TCCCGCGCCGAGGACTACGGCGATCGGGTTGT 129542 29 100.0 32 ............................. TCATCAGATGGTGATGAGGAAAAATTAATAGA 129481 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 129420 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 129359 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 129298 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 129237 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 129176 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 129115 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 129054 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 128993 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 128932 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 128871 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 128810 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //