Array 1 2927776-2926711 **** Predicted by CRISPRDetect 2.4 *** >NC_011741.1 Escherichia coli IAI1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2927775 29 100.0 32 ............................. GTGCCAGCCGCGGCAACGGACGAGCCGGTCGC 2927714 29 100.0 32 ............................. GCACGCTTACGCGCTCAGTTGAAGTGGGGGCG 2927653 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 2927592 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 2927531 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 2927470 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 2927409 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 2927348 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 2927287 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 2927226 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 2927165 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 2927104 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 2927043 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 2926982 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 2926922 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 2926861 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 2926800 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 2926739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2954785-2953475 **** Predicted by CRISPRDetect 2.4 *** >NC_011741.1 Escherichia coli IAI1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2954784 29 100.0 32 ............................. TTATTGGGCTTGTTCGGCGCGGGTTGTTAACT 2954723 29 100.0 32 ............................. TCAACCAGCCTGCTGCGCCTGCGGCACCTTGA 2954662 29 96.6 32 ............................T TTTTTTACGCTCCGGGTGGCGCATATTATCGA 2954601 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 2954540 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 2954479 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 2954418 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 2954357 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 2954296 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 2954235 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 2954174 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 2954113 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 2954052 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 2953991 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 2953930 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 2953869 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 2953808 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 2953747 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 2953686 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 2953625 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 2953564 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 2953503 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //